sample geneA chrA posA ortA featureA geneB chrB posB ortB featureB sv_ort readsA readsB matchA matchB repeatA repeatB coverageA coverageB ratioA ratioB qposA qposB total_readsA total_readsB contig type score rating medal functional effect frame sv_refseqA sv_refseqA_codon sv_refseqA_exon sv_refseqA_anchor_type sv_refseqA_coding_base_number sv_refseqA_last_coding_base_number sv_refseqA_AA_index sv_refseqA_contig_index sv_refseqB sv_refseqB_codon sv_refseqB_exon sv_refseqB_anchor_type sv_refseqB_coding_base_number sv_refseqB_last_coding_base_number sv_refseqB_AA_index sv_refseqB_contig_index sv_AA sv_desc sv_processing_exception sv_general_info sv_interstitial_AA sv_frame_index MV4_11_RNAseq_1 FLT3 chr13 28608255 - coding FLT3 chr13 28608284 - coding > 180 100 149 148 0.000 0.000 3573 1561 0.320 0.190 149 149 1732 1612 TCTCCTCTTCATTGTCGTTTTAACCCTGCTAATTTGTCACAAGTACAAAAAGCAATTTAGGTATGAAAGCCAGCTACAGATGGTACAGGTGACCGGCTCCTCAGATAATGAGTACTTCTACGTTGATTTCAGAGAATATGAATATGATCACGTTGATTTCAGAGAATATGAATATGATCTCAAATGGGAGTTTCCAAGAGAAAATTTAGAGTTTGGGAAGGTACTAGGATCAGGTGCTTTTGGAAAAGTGATGAACGCAACAGCTTATGGAATTAGCAAAACAGGAGTCTCAATCC Internal_dup 10268.00 HQ 4 ITD 1 NM_004119 591 14 perfect 1801 38 117 NM_004119 591 14 tuple 1772 2982 39 118 LLFIVVLTLLICHKYKKQFRYESQLQMVQVTGSSDNEYFYVDFREYEYDHVDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSI FLT3:NM_004119[1,14]-FLT3:NM_004119[14,24] geneB_transcripts=NM_004119 1 MV4_11_RNAseq_1 CTSC chr11 88033698 - coding RAB38 chr11 87883123 - coding > 11 11 277 130 0.000 0.000 552 704 0.040 1.000 277 277 1186 11 GAAAAGTATTCTAATAGGCTCTACAAGTATGATCACAACTTTGTGAAAGCTATCAATGCCATTCAGAAGTCTTGGACTGCAACTACATACATGGAATATGAGACTCTTACCCTGGGAGATATGATTAGGAGAAGTGGTGGCCACAGTCGAAAAATCCCAAGGCCCAAACCTGCACCACTGACTGCTGAAATACAGCAAAAGATTTTGCATTTGCCAACATCTTGGGACTGGAGAAATGTTCATGGTATCAATTTTGTCAGTCCTGTTCGAAACCAAGGTCAAGAAAGATTTGGAAACATGACGAGGGTCTATTACCGAGAAGCTATGGGTGCATTTATTGTCTTCGATGTCACCAGGCCAGTCACATTTGAAGCAGTGGCAAAGTGGAAAAATGATTTGGACTCCAG DEL 2512.00 HQ 0 Fusion 1 NM_001814 253 5 perfect 91 275 NM_022337 68 2 tuple 203 636 92 276 EKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKILHLPTSWDWRNVHGINFVSPVRNQGQERFGNMTRVYYREAMGAFIVFDVTRPVTFEAVAKWKNDLDS CTSC:NM_001814[1,5]-RAB38:NM_022337[2,3] geneB_transcripts=NM_022337 0 MV4_11_RNAseq_1 CBFA2T2 chr20 32078107 + coding RALY chr20 32619328 + 5utr > 6 6 119 63 0.000 0.000 190 410 0.680 0.010 119 119 12 782 GGGCCGCGGGTCGAGGCGGGCGGCGCCTGCGAGGGACCCGTGTCGCGGGTAGAGGCGGGCGGCGCGCGGCGGCGGCGCTCGGCGATGGTAGGCGTCCCTGGAGCGGCCGCCTTCCAGCGTGAGCCCTATTCCCAGAGGCAGGTGGTGCTGACCCTGTAACCCAAAGGAGGAAACAGCCGGC DEL 820.94 HQ 1 Fusion 1,1 NM_001032999,NM_001032999 12,12 1,1 tuple,tuple 34,34 38,38 116,116 NM_007367,NM_016732 -30,-30 2,2 tuple,tuple , 873,921 42,42 126,126 GPRVEAGGACEGPVSRVEAGGARRRRSAMVGVPGAAAFQREPYSQRQVVLTL*PKGGNSR,GPRVEAGGACEGPVSRVEAGGARRRRSAMVGVPGAAAFQREPYSQRQVVLTL*PKGGNSR CBFA2T2:NM_001032999[1,1]-RALY:NM_007367[2,9];CBFA2T2:NM_001032999[1,1]-RALY:NM_016732[2,10] geneB_transcripts=NM_007367,NM_016732;geneb_utr_codons=13 REP,REP 0,0 MV4_11_RNAseq_1 SLITRK1 chr13 84479342 + intron HSD17B12 chr11 43877440 + 3utr > 15 35 299 444 0.990 0.000 576 1651 1.000 0.820 305 306 45 174 TTTTATTTTATTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACTACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTCAGTTTAAATGTATGTAAATATCGAAGCTATATGGTATGATTTATAAAGATAAATGGGCCAAAGTGTACATTGAGACTGGCAGCCATCTATGGTACCACTGAAACCCTGACCCAGAAAAGTGGCTTGCTTGGACACCCAGCTGCCTTTGTTTCTGCATTAAACCAATATTGATCACACATATGACACAGGCTAGTCCTATAAAAGTAATGACTTCATAGAAATGGCATTATAATTTTTAAGTTGATACTCTACAGGTAGCTATTGATATAATTAGTTTTAATAAAACATGCTGCAACCATGGTATACAACAAAAATACATTTCTTTGGTGATTGAAATTAAGGCCGTATTTACAATGACTTAATATAAGACTGACTTTTATCCTGCTTCATAACTTGTATGGAGAACTCACCAAGAAAGAATTCAATACTGTGAAATATGCA CTX 592.51 HQ 0 other NM_016142 939 geneB_no_inframe_contig_found geneB_transcripts=NM_016142;geneb_utr_codons=13 MV4_11_RNAseq_1 PSMA1 chr11 14535137 - coding MAP2K7 chr19 7977182 + coding > 0 3 299 154 0.000 0.150 0 284 0.010 0.080 300 320 2111 105 CGGGGCTTACTGCTGATGCTAGACTGTTATGTAATTTTATGCGTCAGGAGTGTTTGGATTCCAGATTTGTATTCGATAGACCACTGCCTGTGTCTCGTCTTGTATCTCTAATTGGAAGCAAGACCCAGATACCAACACAACGATATGGCCGGAGACCATATGGTGTTGGTCTCCTTATTGCTGGTTATGATGATATGGGCCCTCACATTTTCCAAACCTGTCCATCTGCTAACTATTTTGACTGCAGAGCCATGTCCATTGGAGCCCGTTCCCAATCAGCTCGTACTTACTTGAAGAGACCAAAGTATAATAAGCTACTTGAACACAGCTTCATCAAGCGCTACGAGACGCTGGAGGTGGACGTGGCGTCCTGGTTCAAGGATGTCATGGCGAAGACTGAGTCACCGCGGACTAGCGGCGTCCTGAGCCAGCCCCACCTGCCCTTCTTCAGGTAGCTGCTTGGCGGCGGCCAGC CTX 568.00 HQ 0 Fusion 1,1,1,1,1,1 NM_002786,NM_148976,NM_002786,NM_148976,NM_002786,NM_148976 173,179,173,179,173,179 7,8,7,8,7,8 tuple,tuple,tuple,tuple,tuple,tuple 523,541,523,541,523,541 96,96,96,96,96,96 292,292,292,292,292,292 NM_001297555,NM_001297555,NM_001297556,NM_001297556,NM_145185,NM_145185 392,392,383,383,376,376 12,12,11,11,11,11 tuple,tuple,tuple,tuple,tuple,tuple 1174,1174,1147,1147,1126,1126 1308,1308,1281,1281,1260,1260 106,106,106,106,106,106 320,320,320,320,320,320 GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLKRPKYNKLLEHSFIKRYETLEVDVASWFKDVMAKTESPRTSGVLSQPHLPFFR*LLGGGQ,GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLKRPKYNKLLEHSFIKRYETLEVDVASWFKDVMAKTESPRTSGVLSQPHLPFFR*LLGGGQ,GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLKRPKYNKLLEHSFIKRYETLEVDVASWFKDVMAKTESPRTSGVLSQPHLPFFR*LLGGGQ,GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLKRPKYNKLLEHSFIKRYETLEVDVASWFKDVMAKTESPRTSGVLSQPHLPFFR*LLGGGQ,GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLKRPKYNKLLEHSFIKRYETLEVDVASWFKDVMAKTESPRTSGVLSQPHLPFFR*LLGGGQ,GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLKRPKYNKLLEHSFIKRYETLEVDVASWFKDVMAKTESPRTSGVLSQPHLPFFR*LLGGGQ PSMA1:NM_002786[1,7]-MAP2K7:NM_001297555[12,12];PSMA1:NM_148976[1,8]-MAP2K7:NM_001297555[12,12];PSMA1:NM_002786[1,7]-MAP2K7:NM_001297556[11,11];PSMA1:NM_148976[1,8]-MAP2K7:NM_001297556[11,11];PSMA1:NM_002786[1,7]-MAP2K7:NM_145185[11,11];PSMA1:NM_148976[1,8]-MAP2K7:NM_145185[11,11] geneB_transcripts=NM_001297555,NM_001297556,NM_145185 KRPKYNKLL,KRPKYNKLL,KRPKYNKLL,KRPKYNKLL,KRPKYNKLL,KRPKYNKLL 2,2,2,2,2,2 MV4_11_RNAseq_1 CLEC11A chr19 51227268 + coding ECHS1 chr10 135186858 - 5utr > 15 1 399 174 0.000 0.700 626 45 0.010 0.060 398 459 9739 46 GGAACAGGAAGAGAGAAGCTGGGAGAATCGGGAACCTGGGGGCTAGTGACCTGCACACAGGGCAGGGGCACTCGGCAGTTCCCAGAGGCCACCCCTCCCACCCCAGACATCCAGACATCTGGAACTTTGGGTGCCAAGAGTCCAGCTTAATGCAGGCAGCCTGGCTTTTGGGGGCTTTGGTGGTCCCCCAGCTCTTGGGCTTTGGCCATGGGGCTCGGGGAGCAGAGAGGGAGTGGGAGGGAGGCTGGGGAGGTGCCCAGGAGGAGGAGCGGGAGAGGGAGGCCCTGATGCTGAAGCATCTGCAGGAAGCCCTAGGACTGCCTGCTGGGAGGGGGGATGAGAATCCTGCCGGAACTGTTGAGGGAAAAGAGGACTGGGAGATGGAGGAGGACCAGGGGGGATGAGAATCCTGCCGGAACTGTTGAGGGAAAAGAGGACTGGGAGATGGAGGAGGACCAGGGCGAGGAGTCCAGAGAGCCATGGCCGCCCTGCGTGTCCTGCTGTCCTGCGCCCGCGGCCCGCTGAGGCCCCCGGTTCGCTGTCCCGCCTGGCGTCCCTTCGCCTCGGGTGCTAACTTTGAGTACATCATCGCAGAAAAAAGAGGGAAGAATAACACCGTGGGGTTGATCCAAC CTX 465.60 HQ 0 upTSS 0,2 NM_002975, 84, 2, tuple, 254, 131, 397, NM_004092,NM_004092 -6,-6 1, tuple,tuple , 873,873 155, 467, NRKREAGRIGNLGASDLHTGQGHSAVPRGHPSHPRHPDIWNFGCQESSLMQAAWLLGALVVPQLLGFGHGARGAEREWEGGWGGAQEEEREREALMLKHLQEALGLPAGRGDENPAGTVEGKEDWEMEEDQGG*ESCRNC*GKRGLGDGGGPGRGVQRAMAALRVLLSCARGPLRPPVRCPAWRPFASGANFEYIIAEKRGKNNTVGLIQ, CLEC11A:NM_002975[1,2]-ECHS1:NM_004092[1,8]; geneB_transcripts=NM_004092;geneb_utr_codons=7;not_inframe_due_to_intermediate_stop_codon G*ESCRNC*GKRGLGDGGGPGRG, 2, MV4_11_RNAseq_1 PSMD3 chr17 38154211 + 3utr HSD17B11 chr4 88312266 - 5utr > 0 5 149 195 0.000 0.000 0 172 0.000 0.500 156 157 7 353 CCGATCTGGGTCCTGGCCAGCAGTGTGGGAGCAGGAGGGGAAGGATAGTTCTGTGTACTCCTTTAGGGAGTGGGGGACTAGAACTGGGATGTCTTGGCTTGTATGTTTTTTGAAGCTTCGATTATGATTTTTAAACAATAAAAAGTTCTCCACAGTAAAAAAAAAAAAAAAACACACCAAACGCTCGCAGCCACAAAAGGGATGAAATTTCTTCTGGACATCCTCCTGCTTCTCCCGTTACTGATCGTCTGCTCCCTAGAGTCCTTCGTGAAGCTTTTTATTCCTAAGAGGAGAAAATCAGTCACCGGCGAAATCGTGCTGATTACAGGAGCTGGGCATGGAATTGGGAGAC CTX 344.00 HQ 0 upTSS 0,2 NM_002809, , 12, , , , , NM_016245,NM_016245 -14,-14 1, tuple,tuple , , 55, , PIWVLASSVGAGGEG*FCVLL*GVGD*NWDVLACMFFEASIMIFKQ*KVLHSKKKKKTHQTLAATKGMKFLLDILLLLPLLIVCSLESFVKLFIPKRRKSVTGEIVLITGAGHGIGR, PSMD3:NM_002809[1,12]-HSD17B11:NM_016245[1,7]; geneB_CDS_mapping_exception=NM_016245:-2 geneB_transcripts=NM_016245;geneb_utr_codons=13 , 0, MV4_11_RNAseq_1 PELO,ITGA1 chr5 52096800 + coding CAP1 chr1 40525009 + 5utr > 0 9 82 232 0.000 0.000 1 139 0.000 0.080 86 73 139 830 GTGGAGGTGAACATCCCTAGGAAAAGGAAAGGCAATTGCTCTCAGCATGACCGGGCCTTGGAGCGGAACTCTGAGCAGGTGGTCCATTATGGCTGACATGCAAAATCTGGTAGAAAGATTGGAGAGGGCAGTGGGCCGCCTGGAGGCAGTATCTCATACCTCTGACATGCACCGTGGGTATGCAGACAGTCCTTCAAAAGCAGGAGCAGCTCCATATGTGCAGGCATTTGACTCGCTGCTTGCTGGTCCTGTGGCAGAGTACTTGAAGATCAGTAAAGAGATTGGGGGAGACGTGCAGAAACATGCGGAG CTX 278.00 HQ 0 upTSS 0,0,0,0,2,2 NM_015946,NM_181501,NM_015946,NM_181501,, ,,,,, 2,1,2,1,, ,,,,, 572,,572,,, ,,,,, ,,,,, NM_001105530,NM_001105530,NM_006367,NM_006367,NM_001105530,NM_006367 -3,-3,-3,-3,-3,-3 2,2,2,2,, tuple,tuple,tuple,tuple,tuple,tuple ,,,,, ,,,,, 28,28,28,28,, ,,,,, WR*TSLGKGKAIALSMTGPWSGTLSRWSIMADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGPVAEYLKISKEIGGDVQKHAE,WR*TSLGKGKAIALSMTGPWSGTLSRWSIMADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGPVAEYLKISKEIGGDVQKHAE,WR*TSLGKGKAIALSMTGPWSGTLSRWSIMADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGPVAEYLKISKEIGGDVQKHAE,WR*TSLGKGKAIALSMTGPWSGTLSRWSIMADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGPVAEYLKISKEIGGDVQKHAE,, PELO:NM_015946[1,2]-CAP1:NM_001105530[2,13];ITGA1:NM_181501[1,1]-CAP1:NM_001105530[2,13];PELO:NM_015946[1,2]-CAP1:NM_006367[2,13];ITGA1:NM_181501[1,1]-CAP1:NM_006367[2,13];; geneB_CDS_mapping_exception=NM_001105530:-2;geneB_CDS_mapping_exception=NM_006367:-2 geneB_transcripts=NM_001105530,NM_006367;geneb_utr_codons=4 ,,,,, 1,1,1,1,, MV4_11_RNAseq_1 PIM3,MIR6821 chr22 50357562 + 3utr POLR2E chr19 1095347 - 5utr > 0 4 246 264 0.000 0.000 0 135 0.000 0.170 248 243 221 478 NTCTGCCTCTCCCAAGCCCCAGGGGACAGTGGGGAGGCAGGGGAGGGGGTGGCTGTGGTCCAGGGACCCCAGGCCCTGATTCCTGTGCCTGGCGTCTGTCCTGGCCCCGCCTGTCAGAAGATGAACATGTATAGTGGCTAACTTAAGGGGAGTGGGTGACCCTGACACTTCCAGGCACTGTGCCCAGGGTTTGGGTTTTAAATTATTGACTTTGTACAGTCTGCTTGTGGGCTCTGAAAGCTGGGGTGCGAGCGGCGGCGGCGGCGGAGGCTGCCATGGACGACGAGGAGGAGACGTACCGGCTCTGGAAAATCCGCAAGACCATCATGCAGCTGTGCCACGACCGTGGCTATCTGGTGACCCAGGACGAGCTTGACCAGACCCTGGAGGAGTTCAAAGCCCAATTTGGGGACAAGCCGAGTGAGGGGCGGCCGCGGCGCACGGACCTCACCGTGCTGGTGGCCCACAACGATGACCCCACCGACCAGATGTTTGTGTTCTTTCCAG CTX 270.00 HQ 0 upTSS 0,2 NM_001001852, , 6, , , , , NM_002695,NM_002695 -10,-10 1, tuple,tuple , , 83, , LPLPSPRGQWGGRGGGGCGPGTPGPDSCAWRLSWPRLSEDEHV*WLT*GEWVTLTLPGTVPRVWVLNY*LCTVCLWALKAGVRAAAAAEAAMDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP, PIM3:NM_001001852[1,6]-POLR2E:NM_002695[1,8]; geneB_CDS_mapping_exception=NM_002695:-2 geneB_transcripts=NM_002695;geneb_utr_codons=11 , 2, MV4_11_RNAseq_1 CCT2 chr12 69987321 + coding NASP chr1 46082009 + coding > 0 3 79 289 0.000 0.530 1 125 0.000 0.010 81 94 1924 2051 GAAAGTTGAACGTATTCTTAAGCATGGAATAAATTGCTTTATTAACAGGCAATTAATTTATAATTATCCTGAACTGGCTCTGAAAGCTACTCTGGTGGAGAGTTCTACTTCAGGTTTCACTCCTGGTGGAGGAGGCTCTTCAGTCTCCATGATTGCCAGTAGAAAGCCAACAGACGGTGCTTCCTCATCAAATTGTGTGACTGATATTTCCCACCTTGTCAGAAAGAAGAGGAAACCAGAGGAAGAGAGTCCCCGGAAAGATGATGCAAAGAAAGCCAAACAAGAGCCGGAGGTGAACGGAGGCAGTGGGGATGCTGTCCCCAGTGGAAATGAAGTTTCGGAAAACATGGAGGAGGAGGCTGAGAATCAGGCTGAAAGCCGAG CTX 250.00 HQ 0 Fusion 1,1,1,1,1,1 NM_001198842,NM_006431,NM_001198842,NM_006431,NM_001198842,NM_006431 255,302,255,302,255,302 10,10,10,10,10,10 tuple,tuple,tuple,tuple,tuple,tuple 769,910,769,910,769,910 23,23,23,23,23,23 72,72,72,72,72,72 NM_001195193,NM_001195193,NM_002482,NM_002482,NM_152298,NM_152298 611,611,675,675,336,336 10,10,12,12,11,11 tuple,tuple,tuple,tuple,tuple,tuple 1831,1831,2023,2023,1006,1006 2175,2175,2367,2367,1350,1350 31,31,31,31,31,31 94,94,94,94,94,94 KVERILKHGINCFINRQLIYNYPELALKATLVESSTSGFTPGGGGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR,KVERILKHGINCFINRQLIYNYPELALKATLVESSTSGFTPGGGGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR,KVERILKHGINCFINRQLIYNYPELALKATLVESSTSGFTPGGGGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR,KVERILKHGINCFINRQLIYNYPELALKATLVESSTSGFTPGGGGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR,KVERILKHGINCFINRQLIYNYPELALKATLVESSTSGFTPGGGGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR,KVERILKHGINCFINRQLIYNYPELALKATLVESSTSGFTPGGGGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR CCT2:NM_001198842[1,10]-NASP:NM_001195193[10,13];CCT2:NM_006431[1,10]-NASP:NM_001195193[10,13];CCT2:NM_001198842[1,10]-NASP:NM_002482[12,15];CCT2:NM_006431[1,10]-NASP:NM_002482[12,15];CCT2:NM_001198842[1,10]-NASP:NM_152298[11,14];CCT2:NM_006431[1,10]-NASP:NM_152298[11,14] geneB_transcripts=NM_001195193,NM_002482,NM_152298 LALKATL,LALKATL,LALKATL,LALKATL,LALKATL,LALKATL 1,1,1,1,1,1 MV4_11_RNAseq_1 NBEAL1 chr2 204055518 - intron COX5B chr2 98262542 + coding > 2 3 92 334 0.930 0.010 114 67 0.050 0.100 92 147 793 1156 GGCCGATCTTGGGGGCCAGGGCAGAAGTGGCACCGACTTCACCTCCGGTGCACCTCAGGTATACGACTTTGATCTCGTTGGGGTCGAACTTCACCTCCGGTGCACCTCAGGTATACGACTTTGATCTCGTTGGGGTCGAACTTCCGCGGACGCAATGGCTTCAAGGTTACTTCGCGGAGCTGGAACGCTGGCCGCGCAGGCCCTGAGGGCTCGCGGCCCCAGTGGCGCGGCCGCGATGCGCTCCATGGCATCTGGAGGTGGTGTTCCCACTGATGAAGAGCAGGCGACTGGGTTGGAGAGGGAGATCATGCTGGCTGCAAAGAAGGGACTGGACCCATACAATGTACTGGCCCTAAAGGGAGCTTCAGGCACCAGGGAAGACCCTAATTTAGTCCCCTCCATCTCCAACAAGAGAATAGTAGGCTGCATCTGTGAAGAGGACAATACCAGCGTCGTCTGGTTTTGGCTGCACAAAGGCGAG ITX 235.10 HQ 0 upTSS 0,2 NM_001114132, , 45, , , , , NM_001862,NM_001862 -2,-2 1, tuple,tuple , 390,390 51, , ADLGGQGRSGTDFTSGAPQVYDFDLVGVELHLRCTSGIRL*SRWGRTSADAMASRLLRGAGTLAAQALRARGPSGAAAMRSMASGGGVPTDEEQATGLEREIMLAAKKGLDPYNVLALKGASGTREDPNLVPSISNKRIVGCICEEDNTSVVWFWLHKGE, NBEAL1:NM_001114132[1,45]-COX5B:NM_001862[1,4]; geneB_transcripts=NM_001862;geneb_utr_codons=3 , 1, MV4_11_RNAseq_1 VDAC3 chr8 42259520 + coding CSTA chr3 122044117 + 5utr > 0 9 107 147 0.000 0.030 0 115 0.000 0.070 152 150 3468 2556 TGATACACATTTTTCGGGACCAACTATCTATTTTTTGCCTGTGTTGGCCTTCGAACGGTAGCTTGCTGGCCATCAGATGAGTGTTGACACAGCCAAATCCAAACTGTCACAGAATAATTTCGCCCTGGGTTACAAGGCTGCGGCTGTCCAGCAAAGAAGCAATCAGCCAAAATGATACCTGGAGGCTTATCTGAGGCCAAACCCGCCACTCCAGAAATCCAGGAGATTGTTGATAAGGTTAAACCACAGCTTGAAGAAAAAACAAATGAGACTTATGGAAAATTGGAAGCTGCGCAGATCG CTX 230.00 HQ 0 upTSS 0,0,2 NM_001135694,NM_005662, ,, 7,7, ,, ,538, ,, ,, NM_005213,NM_005213,NM_005213 -7,-7,-7 1,1, tuple,tuple,tuple ,, 297,297,297 52,52, ,, *YTFFGTNYLFFACVGLRTVACWPSDEC*HSQIQTVTE*FRPGLQGCGCPAKKQSAKMIPGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAAQI,*YTFFGTNYLFFACVGLRTVACWPSDEC*HSQIQTVTE*FRPGLQGCGCPAKKQSAKMIPGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAAQI, VDAC3:NM_001135694[1,7]-CSTA:NM_005213[1,3];VDAC3:NM_005662[1,7]-CSTA:NM_005213[1,3]; geneB_transcripts=NM_005213;geneb_utr_codons=8 ,, 0,0, MV4_11_RNAseq_1 NA chr6 153603849 + intergenic PSMA4 chr15 78834247 + 5utr > 2 6 312 119 0.500 0.000 79 28 0.010 0.030 313 324 694 3195 AGAACTTTGTAGTAGCCCGATCGCACCACATCAATGATGGGCGCAGCCCCAGTCTTGTTTTTAGCAGCATTCACCCGTGTCTGTTCACTGACCAAAGTCCACAATTTGTCAAGGTTGACAGTTGGGCAGAAGCTCTGGTTCCTCTTTAAGTGGTAATGCTTCATACCAACTTTCCCAAAGTAGCCTGGGTGGTATTTGTCGAAGTTGATCCGGTGGTGATGCAGACCACCAGCATTACCGCGGCCGCCGGGGTGCTTCCGGTGCTTGCCTATGCGGCCGTGGCCGTGGCTCACGTGGCCCCTAAGTTTCCGGGTCTTCCATCTGGAACTATATAAAGTTCAGAAAACATGTCTCGAAGATATGACTCCAGGACCACTATATTTTCTCCAGAAGGTCGCTTATACCAAGTTGAATATGCCATGGAAGCTATTGGACATGCAGG CTX 186.00 HQ 0 upTSS 2,0,2 ,, ,, ,, ,, ,, ,, ,, NM_001102667,NM_001102668,NM_002789 -7,-24,-7 ,, tuple,tuple,tuple ,, 786,573,786 ,, ,, ,, ;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001102667,NM_001102668,NM_002789;geneb_utr_codons=8;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 ATG13 chr11 46694317 - 3utr CD63 chr12 56121004 - coding > 2 1 142 264 0.000 0.000 71 6 0.060 0.000 143 134 236 3707 AGGCCTGTCATATTGCCAGAAATACAGGCATAGAGGCAAGAGAGAGAAGAAGAGGAGAAGAAGATAGCAGGAAGTAAAGGGGACAATGAAGAGAGCTAAGGGACTCCTTCCTTCTTCCTCCTGGCACTGTCTCCTTCCTCTTCCTGGTGGCTTTTGTGGGCTGCTGCGGGGCCTGCAAGGAGAACTATTGTCTTATGATCACGTTTGCCATCTTTCTGTCTCTTATCATGTTGGTGGAGGTGGCCGCAGCCATTGCTGGCTATGTGTTTAGAGATAAGGTGATGTCAGAGTTTAATAACAACTTCCGGCAGCAGATGGAGAATTACCCGAAAAACAACCACACTGCTTCGAGCCTGGACAGGATGCAGGCAGATTTTAAGTGCTGTGGGGCTGCTAAC CTX 142.00 HQ 0 upTSS 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,3,3,3,2,2,3,3 NM_001142673,NM_001205119,NM_001205120,NM_001205121,NM_001205122,NM_014741,NM_001142673,NM_001205119,NM_001205120,NM_001205121,NM_001205122,NM_014741,NM_001142673,NM_001205119,NM_001205120,NM_001205121,NM_001205122,NM_014741,NM_001142673,NM_001205119,NM_001205120,NM_001205121,NM_001205122,NM_014741,NM_001142673,NM_001205119,NM_001205120,NM_001205121,NM_001205122,NM_014741,NM_001142673,NM_001205119,NM_001205120,NM_001205121,NM_001205122,NM_014741,NM_001142673,NM_001205119,NM_001205120,NM_001205121,NM_001205122,NM_014741,NM_001142673,NM_001205119,NM_001205120,NM_001205121,NM_001205122,NM_014741,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 18,18,17,17,15,17,18,18,17,17,15,17,18,18,17,17,15,17,18,18,17,17,15,17,18,18,17,17,15,17,18,18,17,17,15,17,18,18,17,17,15,17,18,18,17,17,15,17,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001257389,NM_001257389,NM_001257389,NM_001257389,NM_001257389,NM_001257389,NM_001257390,NM_001257390,NM_001257390,NM_001257390,NM_001257390,NM_001257390,NM_001257391,NM_001257391,NM_001257391,NM_001257391,NM_001257391,NM_001257391,NM_001257392,NM_001257392,NM_001257392,NM_001257392,NM_001257392,NM_001257392,NM_001257400,NM_001257400,NM_001257400,NM_001257400,NM_001257400,NM_001257400,NM_001257401,NM_001257401,NM_001257401,NM_001257401,NM_001257401,NM_001257401,NM_001267698,NM_001267698,NM_001267698,NM_001267698,NM_001267698,NM_001267698,NM_001780,NM_001780,NM_001780,NM_001780,NM_001780,NM_001780,NM_001257389,NM_001257390,NM_001257391,NM_001257392,NM_001257400,NM_001257401,NM_001267698,NM_001780 62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,39,39,39,39,39,39,-20,-20,-20,-20,-20,-20,-20,-20,-20,-20,-20,-20,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,39,-20,-20,62,62 3,3,3,3,3,3,3,3,3,3,3,3,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,3,3,3,3,3,3,3,3,3,3,3,3,,,,,,,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,tuple,tuple,blat,blat 186,186,186,186,186,186,186,186,186,186,186,186,186,186,186,186,186,186,117,117,117,117,117,117,,,,,,,,,,,,,186,186,186,186,186,186,186,186,186,186,186,186,186,186,186,117,,,186,186 717,717,717,717,717,717,717,717,717,717,717,717,717,717,717,717,717,717,648,648,648,648,648,648,471,471,471,471,471,471,471,471,471,471,471,471,717,717,717,717,717,717,717,717,717,717,717,717,717,717,717,648,471,471,717,717 44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,46,46,46,46,46,46,46,46,46,46,46,46,44,44,44,44,44,44,44,44,44,44,44,44,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,,,,,,,, ATG13:NM_001142673[1,18]-CD63:NM_001257389[3,8];ATG13:NM_001205119[1,18]-CD63:NM_001257389[3,8];ATG13:NM_001205120[1,17]-CD63:NM_001257389[3,8];ATG13:NM_001205121[1,17]-CD63:NM_001257389[3,8];ATG13:NM_001205122[1,15]-CD63:NM_001257389[3,8];ATG13:NM_014741[1,17]-CD63:NM_001257389[3,8];ATG13:NM_001142673[1,18]-CD63:NM_001257390[3,8];ATG13:NM_001205119[1,18]-CD63:NM_001257390[3,8];ATG13:NM_001205120[1,17]-CD63:NM_001257390[3,8];ATG13:NM_001205121[1,17]-CD63:NM_001257390[3,8];ATG13:NM_001205122[1,15]-CD63:NM_001257390[3,8];ATG13:NM_014741[1,17]-CD63:NM_001257390[3,8];ATG13:NM_001142673[1,18]-CD63:NM_001257391[2,7];ATG13:NM_001205119[1,18]-CD63:NM_001257391[2,7];ATG13:NM_001205120[1,17]-CD63:NM_001257391[2,7];ATG13:NM_001205121[1,17]-CD63:NM_001257391[2,7];ATG13:NM_001205122[1,15]-CD63:NM_001257391[2,7];ATG13:NM_014741[1,17]-CD63:NM_001257391[2,7];ATG13:NM_001142673[1,18]-CD63:NM_001257392[2,7];ATG13:NM_001205119[1,18]-CD63:NM_001257392[2,7];ATG13:NM_001205120[1,17]-CD63:NM_001257392[2,7];ATG13:NM_001205121[1,17]-CD63:NM_001257392[2,7];ATG13:NM_001205122[1,15]-CD63:NM_001257392[2,7];ATG13:NM_014741[1,17]-CD63:NM_001257392[2,7];ATG13:NM_001142673[1,18]-CD63:NM_001257400[2,7];ATG13:NM_001205119[1,18]-CD63:NM_001257400[2,7];ATG13:NM_001205120[1,17]-CD63:NM_001257400[2,7];ATG13:NM_001205121[1,17]-CD63:NM_001257400[2,7];ATG13:NM_001205122[1,15]-CD63:NM_001257400[2,7];ATG13:NM_014741[1,17]-CD63:NM_001257400[2,7];ATG13:NM_001142673[1,18]-CD63:NM_001257401[2,7];ATG13:NM_001205119[1,18]-CD63:NM_001257401[2,7];ATG13:NM_001205120[1,17]-CD63:NM_001257401[2,7];ATG13:NM_001205121[1,17]-CD63:NM_001257401[2,7];ATG13:NM_001205122[1,15]-CD63:NM_001257401[2,7];ATG13:NM_014741[1,17]-CD63:NM_001257401[2,7];ATG13:NM_001142673[1,18]-CD63:NM_001267698[3,8];ATG13:NM_001205119[1,18]-CD63:NM_001267698[3,8];ATG13:NM_001205120[1,17]-CD63:NM_001267698[3,8];ATG13:NM_001205121[1,17]-CD63:NM_001267698[3,8];ATG13:NM_001205122[1,15]-CD63:NM_001267698[3,8];ATG13:NM_014741[1,17]-CD63:NM_001267698[3,8];ATG13:NM_001142673[1,18]-CD63:NM_001780[3,8];ATG13:NM_001205119[1,18]-CD63:NM_001780[3,8];ATG13:NM_001205120[1,17]-CD63:NM_001780[3,8];ATG13:NM_001205121[1,17]-CD63:NM_001780[3,8];ATG13:NM_001205122[1,15]-CD63:NM_001780[3,8];ATG13:NM_014741[1,17]-CD63:NM_001780[3,8];;;;;;;; geneB_transcripts=NM_001257389,NM_001257390,NM_001257391,NM_001257392,NM_001257400,NM_001257401,NM_001267698,NM_001780;geneb_utr_codons=13 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,,,,,,,, MV4_11_RNAseq_1 MBNL1-AS1 chr3 151987493 - intron DDX39A chr19 14524036 - coding > 2 7 178 67 0.000 0.000 126 42 0.070 0.110 179 176 96 2073 CTAAAAACCAGAACCCAAGTACTAACTACTTTTCATTCTTTTCAACCTTTCATGAAAGCAATTCAACCAACTGCGGCTCCACCCAAAGAGCTTCTATACTTACTTTTCTTACAGTTTTTGAGTGACGCACTACAAAACGATGAAAAAAAAAAAGAAGAAGAAGAAAAGGAGGAGGCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAG CTX 88.62 HQ 0 upTSS 0,0,2 NM_021038,NM_207292, ,, 1,1, ,, ,, ,, ,, NM_005804,NM_005804,NM_005804 -1,-1,-1 2,2, tuple,tuple,tuple ,, 1284,1284,1284 60,60, ,, KNQNPSTNYFSFFSTFHESNSTNCGSTQRASILTFLTVFE*RTTKR*KKKRRRRKGGGSIMAEQDVENDLLDYDEEEEPQ,KNQNPSTNYFSFFSTFHESNSTNCGSTQRASILTFLTVFE*RTTKR*KKKRRRRKGGGSIMAEQDVENDLLDYDEEEEPQ, MBNL1:NM_021038[1,1]-DDX39A:NM_005804[2,11];MBNL1:NM_207292[1,1]-DDX39A:NM_005804[2,11]; geneB_transcripts=NM_005804;geneb_utr_codons=2 ,, 2,2, MV4_11_RNAseq_1 COLEC11 chr2 3665252 + intron CYBA chr16 88717436 - 5utr > 2 1 127 100 0.850 0.000 24 50 1.000 0.140 138 147 4 5461 TCTTCCGATCTGGCGGCGCACGCCTCATTACGATTCGCCTGCTTGCTTCTCCTGTTCAATCGTTTCTTTGGAAGGCAGTGGATTTTTCTCTTGCGTCTCTGTCTTCTTCAGTTTCGACTTATCGAATTTCTCGATCTCAGCCATATCGGGTTCGTGTCGCCATGGGGCAGATCGAGTGGGCCATGTGGGCCAACGAGCAGGCGCTGGCGTCCGGCCTGATCCTCATCACCGGGGGCATCGTGGCCAC CTX 63.00 HQ 0 upTSS 0,0,0,0,0,0,0,0,0,0,2 NM_001255982,NM_001255983,NM_001255984,NM_001255985,NM_001255986,NM_001255987,NM_001255988,NM_001255989,NM_024027,NM_199235, ,,,,,,,,,, 2,3,2,4,2,1,2,1,3,3, ,,,,,,,,,, 130,202,130,244,124,52,124,52,202,114, ,,,,,,,,,, ,,,,,,,,,, NM_000101,NM_000101,NM_000101,NM_000101,NM_000101,NM_000101,NM_000101,NM_000101,NM_000101,NM_000101,NM_000101 -4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4 1,1,1,1,1,1,1,1,1,1, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,, 588,588,588,588,588,588,588,588,588,588,588 51,51,51,51,51,51,51,51,51,51, ,,,,,,,,,, FRSGGARLITIRLLASPVQSFLWKAVDFSLASLSSSVSTYRISRSQPYRVRVAMGQIEWAMWANEQALASGLILITGGIVA,FRSGGARLITIRLLASPVQSFLWKAVDFSLASLSSSVSTYRISRSQPYRVRVAMGQIEWAMWANEQALASGLILITGGIVA,FRSGGARLITIRLLASPVQSFLWKAVDFSLASLSSSVSTYRISRSQPYRVRVAMGQIEWAMWANEQALASGLILITGGIVA,FRSGGARLITIRLLASPVQSFLWKAVDFSLASLSSSVSTYRISRSQPYRVRVAMGQIEWAMWANEQALASGLILITGGIVA,FRSGGARLITIRLLASPVQSFLWKAVDFSLASLSSSVSTYRISRSQPYRVRVAMGQIEWAMWANEQALASGLILITGGIVA,FRSGGARLITIRLLASPVQSFLWKAVDFSLASLSSSVSTYRISRSQPYRVRVAMGQIEWAMWANEQALASGLILITGGIVA,FRSGGARLITIRLLASPVQSFLWKAVDFSLASLSSSVSTYRISRSQPYRVRVAMGQIEWAMWANEQALASGLILITGGIVA,FRSGGARLITIRLLASPVQSFLWKAVDFSLASLSSSVSTYRISRSQPYRVRVAMGQIEWAMWANEQALASGLILITGGIVA,FRSGGARLITIRLLASPVQSFLWKAVDFSLASLSSSVSTYRISRSQPYRVRVAMGQIEWAMWANEQALASGLILITGGIVA,FRSGGARLITIRLLASPVQSFLWKAVDFSLASLSSSVSTYRISRSQPYRVRVAMGQIEWAMWANEQALASGLILITGGIVA, COLEC11:NM_001255982[1,2]-CYBA:NM_000101[1,6];COLEC11:NM_001255983[1,3]-CYBA:NM_000101[1,6];COLEC11:NM_001255984[1,2]-CYBA:NM_000101[1,6];COLEC11:NM_001255985[1,4]-CYBA:NM_000101[1,6];COLEC11:NM_001255986[1,2]-CYBA:NM_000101[1,6];COLEC11:NM_001255987[1,1]-CYBA:NM_000101[1,6];COLEC11:NM_001255988[1,2]-CYBA:NM_000101[1,6];COLEC11:NM_001255989[1,1]-CYBA:NM_000101[1,6];COLEC11:NM_024027[1,3]-CYBA:NM_000101[1,6];COLEC11:NM_199235[1,3]-CYBA:NM_000101[1,6]; geneB_transcripts=NM_000101;geneb_utr_codons=5 ,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2, MV4_11_RNAseq_1 TTBK1 chr6 43250787 + coding PDIA4 chr7 148718204 - coding > 0 6 56 337 0.970 0.000 1 116 0.140 0.020 57 56 5 600 GGAAGAAGAAGAAGAGGAAGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGATGATGATGAGGAAGAAGACGACTTGGAAGTTAAGGAAGAAAATGGAGTCTTGGTCCTAAATGATGCAAACTTTGATAATTTTGTGGCTGACAAAGACACAGTGCTGCTGGAGTTTTATGCTCCATGGTGTGGACATTGCAAGCAGTTTGCTCCGGAATATGAAAAAATTGCCAACATATTAAAGGATAAAGATCCTCCCATTCCTGTTGCCAAGATCGATGCAACCTCAGCGTCTGTGCTGGCCAGCAGGTTTGATGTGAGTGGCTACCCCACCATCAAGATCCTTAAGAAGGGGCAGGCTGTAGACTACGAGGGCTCCAGAACCCAGGAAGAAATTG CTX 2.00 HQ 0 Fusion 1 NM_032538 762 14 perfect 2309 12 39 NM_004911 42 2 tuple 124 1938 13 40 EEEEEEEEEEEEEEEEEEEDDDEEEDDLEVKEENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEI TTBK1:NM_032538[1,14]-PDIA4:NM_004911[2,10] geneB_transcripts=NM_004911 1 MV4_11_RNAseq_1 LINC01197 chr15 95789201 + intergenic DDA1 chr19 17420381 + 5utr > 0 4 42 298 0.900 0.000 1 29 0.010 0.040 44 51 0 291 CTGTAATCCCAGCTACTCGGGAGGCGAATGCAGGAGAATCACTGTGGAGGCTGAGGCGGCGGCTAAGAAGGCGGCTCTGGTGGCGGCGGTGGAGGCTGAGGCGGCGGCCGAGGCGGCGACGGAGGAAACAGAAGATGGCAGATTTTTTGAAAGGACTGCCTGTCTACAACAAAAGCAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCTCGAACCGACGGCCCTCAGTCTACCTGCCTACCCGCGAGTACCCGTCTGAACAGATCATCGTGACAGAAAAGACAAACATCCTCCTGCGCTACCTGCATCAGCAATGGGACAAAAAGAACGCTGCCAAGAAGAG CTX 2.00 HQ 0 upTSS 2 NM_024050 -27 tuple 309 geneA_no_transcript_IDs_found geneB_transcripts=NM_024050;geneb_utr_codons=13 MV4_11_RNAseq_1 CNTN4 chr3 2302511 - intron DDA1 chr19 17420381 + 5utr > 0 4 41 298 0.900 0.000 1 29 0.010 0.040 44 51 0 291 CTGTAATCCCAGCTACTCGGGAGGCGAATGCAGGAGAATCACTGTGGAGGCTGAGGCGGCGGCTAAGAAGGCGGCTCTGGTGGCGGCGGTGGAGGCTGAGGCGGCGGCCGAGGCGGCGACGGAGGAAACAGAAGATGGCAGATTTTTTGAAAGGACTGCCTGTCTACAACAAAAGCAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCTCGAACCGACGGCCCTCAGTCTACCTGCCTACCCGCGAGTACCCGTCTGAACAGATCATCGTGACAGAAAAGACAAACATCCTCCTGCGCTACCTGCATCAGCAATGGGACAAAAAGAACGCTGCCAAGAAGAG CTX 2.00 HQ 0 upTSS 0,0,2 NM_001206955,NM_175607, ,, 1,2, ,, ,, ,, ,, NM_024050,NM_024050,NM_024050 -27,-27,-27 1,1, tuple,tuple,tuple ,, 309,309,309 19,19, ,, VIPATREANAGESLWRLRRRLRRRLWWRRWRLRRRPRRRRRKQKMADFLKGLPVYNKSNFSRFHADSVCKASNRRPSVYLPTREYPSEQIIVTEKTNILLRYLHQQWDKKNAAKK,VIPATREANAGESLWRLRRRLRRRLWWRRWRLRRRPRRRRRKQKMADFLKGLPVYNKSNFSRFHADSVCKASNRRPSVYLPTREYPSEQIIVTEKTNILLRYLHQQWDKKNAAKK, CNTN4:NM_001206955[1,1]-DDA1:NM_024050[1,5];CNTN4:NM_175607[1,2]-DDA1:NM_024050[1,5]; geneB_transcripts=NM_024050;geneb_utr_codons=13 ,, 2,2, MV4_11_RNAseq_1 MINOS1P1 chr13 33070928 - 3utr MINOS1 chr1 19923486 + 5utr > 0 4 33 177 0.000 0.000 1 122 0.010 0.160 41 42 20 38 CGGCCGAGAGGAAAGCTGGAGGCGCGGGTGGGGAACATGTCTGGGTCGGAGCGCGGGGGCCGGCCGAGAGGAAAGCTGGAGGCGCGGGTGGGGAACATGTCTGAGTCGGAGCTCGGCAGGAAGTGGGACCGGTGTCTGGCGGATGCGGTCGTGAAGATAGGTACTGGTTTTGGATTAGGAATTGTTTTCTCACTTACCTTCTTTAAAAGAAGAATGTGG CTX 2.00 HQ 0 upTSS 0,0,0,0,0,0,0,0,0,0,2,2,2,0,0 NM_001278432,NM_033111,NM_001278432,NM_033111,NM_001278432,NM_033111,NM_001278432,NM_033111,NM_001278432,NM_033111,,,,, ,,,,,,,,,,,,,, 6,6,6,6,6,6,6,6,6,6,,,,, ,,,,,,,,,,,,,, 365,410,365,410,365,410,365,410,365,410,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, NM_001032363,NM_001032363,NM_001204082,NM_001204082,NM_001204083,NM_001204083,NM_001204088,NM_001204088,NM_001204089,NM_001204089,NM_001032363,NM_001204082,NM_001204083,NM_001204088,NM_001204089 -17,-17,-17,-17,-17,-17,-93,-93,-45,-45,-17,-17,-17,-93,-45 1,1,1,1,1,1,1,1,1,1,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,,,,, 237,237,189,189,423,423,588,588,546,546,237,189,423,588,546 17,17,17,17,17,17,16,16,16,16,,,,, ,,,,,,,,,,,,,, RPRGKLEARVGNMSGSERGGRPRGKLEARVGNMSESELGRKWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMW,RPRGKLEARVGNMSGSERGGRPRGKLEARVGNMSESELGRKWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMW,RPRGKLEARVGNMSGSERGGRPRGKLEARVGNMSESELGRKWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMW,RPRGKLEARVGNMSGSERGGRPRGKLEARVGNMSESELGRKWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMW,RPRGKLEARVGNMSGSERGGRPRGKLEARVGNMSESELGRKWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMW,RPRGKLEARVGNMSGSERGGRPRGKLEARVGNMSESELGRKWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMW,GREESWRRGWGTCLGRSAGAGREESWRRGWGTCLSRSSAGSGTGVWRMRS*R*VLVLD*ELFSHLPSLKEEC,GREESWRRGWGTCLGRSAGAGREESWRRGWGTCLSRSSAGSGTGVWRMRS*R*VLVLD*ELFSHLPSLKEEC,AERKAGGAGGEHVWVGARGPAERKAGGAGGEHV*VGARQEVGPVSGGCGREDRYWFWIRNCFLTYLL*KKNV,AERKAGGAGGEHVWVGARGPAERKAGGAGGEHV*VGARQEVGPVSGGCGREDRYWFWIRNCFLTYLL*KKNV,,,,, N4BP2L2:NM_001278432[1,6]-MINOS1:NM_001032363[1,4];N4BP2L2:NM_033111[1,6]-MINOS1:NM_001032363[1,4];N4BP2L2:NM_001278432[1,6]-MINOS1:NM_001204082[1,3];N4BP2L2:NM_033111[1,6]-MINOS1:NM_001204082[1,3];N4BP2L2:NM_001278432[1,6]-MINOS1:NM_001204083[1,5];N4BP2L2:NM_033111[1,6]-MINOS1:NM_001204083[1,5];N4BP2L2:NM_001278432[1,6]-MINOS1-NBL1:NM_001204088[1,5];N4BP2L2:NM_033111[1,6]-MINOS1-NBL1:NM_001204088[1,5];N4BP2L2:NM_001278432[1,6]-MINOS1-NBL1:NM_001204089[1,4];N4BP2L2:NM_033111[1,6]-MINOS1-NBL1:NM_001204089[1,4];;;;; geneB_transcripts=NM_001032363,NM_001204082,NM_001204083,NM_001204088,NM_001204089;geneb_utr_codons=13;reannotated geneB from MINOS1,MINOS1-NBL1,NBL1 to MINOS1 ,,,,,,,,,,,,,, 0,0,0,0,0,0,1,1,2,2,,,,, MV4_11_RNAseq_1 MTRNR2L1 chr17 22030312 - intergenic DNAJC11 chr1 6761887 - 5utr > 0 3 29 185 0.840 0.000 1 72 0.010 1.000 39 37 0 4 GAGTAATACGGATGTGTTTAGGAGTGGGACTTCTAGGGGTTTGGCGGGGTGAAAGGTTGCGAAGATGGCGACGGCCTTGAGCGAGGAGGAGCTGGACAATGAAGACTATTACTCGTTGCTGAACGTGCGCAGGGAGGCCTCTTCTGAAGAGCTGAAAGCTGCCTACCGGAGGCTCTGTATGCTCTACCATCCAGACAAGCACAGAGACCCAGAGCTCAAGTC CTX 2.00 HQ 0 upTSS 2 NM_018198 -8 tuple 1680 geneA_no_transcript_IDs_found geneB_transcripts=NM_018198;geneb_utr_codons=9 MV4_11_RNAseq_1 KMT2A chr11 118353211 + coding AFF1 chr4 88011136 + coding > 2 0 93 62 0.000 0.000 116 1 0.500 0.000 94 91 13 5 CTCCACCACCAGAATCAGGTCCAGAGCAGAGCAAACAGAAAAAAGTGGCTCCCCGCCCAAGTATCCCTGTAAAACAAAAACCAAAAGAAAAGGAAATGACCCATTCATGGCCGCCTCCTTTGACAGCAATACATACGCCTAGTACAGCTGAG CTX 0.35 HQ 4 Fusion 1,1,1,1 NM_001197104,NM_005933,NM_001197104,NM_005933 1363,1363,1363,1363 8,8,8,8 perfect,perfect,perfect,perfect 4086,4086,4086,4086 29,29,29,29 91,91,91,91 NM_001166693,NM_001166693,NM_005935,NM_005935 369,369,362,362 6,6,5,5 tuple,tuple,tuple,tuple 1105,1105,1084,1084 3657,3657,3633,3633 30,30,30,30 92,92,92,92 PPPESGPEQSKQKKVAPRPSIPVKQKPKEKEMTHSWPPPLTAIHTPSTAE,PPPESGPEQSKQKKVAPRPSIPVKQKPKEKEMTHSWPPPLTAIHTPSTAE,PPPESGPEQSKQKKVAPRPSIPVKQKPKEKEMTHSWPPPLTAIHTPSTAE,PPPESGPEQSKQKKVAPRPSIPVKQKPKEKEMTHSWPPPLTAIHTPSTAE KMT2A:NM_001197104[1,8]-AFF1:NM_001166693[6,21];KMT2A:NM_005933[1,8]-AFF1:NM_001166693[6,21];KMT2A:NM_001197104[1,8]-AFF1:NM_005935[5,20];KMT2A:NM_005933[1,8]-AFF1:NM_005935[5,20] geneB_transcripts=NM_001166693,NM_005935 ,,, 2,2,2,2 MV4_11_RNAseq_1 FLT3 chr13 28608271 - coding FLT3 chr13 28608301 - coding > 1 125 50 166 0.000 0.000 103 1199 0.000 0.400 50 50 1670 1468 CCAGCTACAGATGGTACAGGTGACCGGCTCCTCAGATAATGAGTACTTCTACGTTGATTTCAGAGAATATGAATATGATCACGTTGATTTCAGAGAATATGAATATGATCTCAAATGGGAGTTTCCAAGAGAAAATTTAGAGTTTGGGAAGGTACTAGGATCAGGTGCTTTTGGAAAAGTGATGAACGCAACAGCTTATGGAATTAGCAAAACAG Internal_dup 0.01 HQ 4 ITD 1 NM_004119 585 14 perfect 1785 9 30 NM_004119 585 14 tuple 1755 2982 10 31 QLQMVQVTGSSDNEYFYVDFREYEYDHVDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKT FLT3:NM_004119[1,14]-FLT3:NM_004119[14,24] geneB_transcripts=NM_004119 1 MV4_11_RNAseq_1 HNRNPU chr1 245018842 - coding NA chr14 43769471 + intergenic > 18 0 138 86 0.000 0.000 957 1 0.020 0.010 204 202 3279 0 CTGGGAATCGTGGCGGATATAATAGGAGGGGCAACATGCCACAGAGAGGTGGTGGCGGTGGTGGCCATAGAGGACGTGGAGGATTCAATATGCGTGGTGGAAATTTCAGAGGAGGAGCCCCTGGGAATCGTGGCGGATATAATAGGAGGGGCAACATGCCACAGAGAGGTGGTGGCGGTGGAGGATTCAATATGCGTGGTGGAAATTTCAGAGGAGGAGCCCCTGGGAATCGTGGCGGATATAATAGGAGGGGCAACATGCCACAGAGAGGTGGTGGCGGTGGTGGAAATTTCAGAGGAGGAGCCCCTGGGAATCGTGGCGGATATAATAGGAG CTX 958.00 LQ 0 CLoss , NM_004501,NM_031844 , , , 2179,2236 , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 HNRNPU chr1 245018842 - coding NA chr14 43769471 + intergenic > 14 0 129 86 0.070 0.000 917 1 0.020 0.010 186 197 3279 0 CTGGGAATCGTGGCGGATATAATAGGAGGGGCAACATGCCACAGAGAGGTGGTGGCGGTGGTGGCCATAGAGGACGTGGAGGATTCAATATGCGTGGTGGAAATTTCAGAGGAGGAGCCCCTGGGAATCGTGGCGGATATAATAGGAGGGGCAACATGCCACAGAGAGGTGGTGGCGGTGGAGGATTCAATATGCGTGGTGGAAATTTCAGAGGAGGAGCCCCTGGGAATCGTGGCGGATATAATAGGAGGGGCAACATGCCACAGAGAGGTGGTGGCGGTGGTGGAAATTTCAGAGGAGGAGCCCCTGGGAATCGTGGCGGATATAATAGGAG CTX 917.93 LQ 0 CLoss , NM_004501,NM_031844 , , , 2179,2236 , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 LRRC75A-AS1,SNORD49B chr17 16342639 - 5utr BAZ1A chr14 35253020 - coding > 44 0 141 136 0.130 0.000 492 0 0.250 0.000 142 156 2961 294 CCTGGCTACAATACTCACACGCCCAACATGATGCTGATTCTTCACGAATTTGCAACCCAGTTCTCTCGGGTTTGCACACCCCCACTGTGGGCCGGGGAACCGGGTCCCGGCCTTCGCAGACTCCAGGCTCTGGCAGATGTGGCCCTCCATAACAACGGGAATGAAAAGCAGAACAACATCGAAAAGAGAGGGAAGAAGCAGCTGCCAGAATTCGTAAAAGGAAGGAAGAAAAACTTAAGGAGCAAGAACAAAAAATGAAAGAGAAACAAGAAAAACTGAAAGAAGATGAGCA CTX 492.00 LQ 0 NLoss 3,3 , , , , , , , NM_013448,NM_182648 649,617 , blat,blat 1945,1849 4671,4575 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_013448,NM_182648 , , MV4_11_RNAseq_1 MAP3K9 chr14 71265495 + intron HSD17B12 chr11 43877440 + 3utr > 12 35 304 444 0.990 0.000 380 1651 1.000 0.820 305 306 38 174 TTTTATTTTATTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACTACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTCAGTTTAAATGTATGTAAATATCGAAGCTATATGGTATGATTTATAAAGATAAATGGGCCAAAGTGTACATTGAGACTGGCAGCCATCTATGGTACCACTGAAACCCTGACCCAGAAAAGTGGCTTGCTTGGACACCCAGCTGCCTTTGTTTCTGCATTAAACCAATATTGATCACACATATGACACAGGCTAGTCCTATAAAAGTAATGACTTCATAGAAATGGCATTATAATTTTTAAGTTGATACTCTACAGGTAGCTATTGATATAATTAGTTTTAATAAAACATGCTGCAACCATGGTATACAACAAAAATACATTTCTTTGGTGATTGAAATTAAGGCCGTATTTACAATGACTTAATATAAGACTGACTTTTATCCTGCTTCATAACTTGTATGGAGAACTCACCAAGAAAGAATTCAATACTGTGAAATATGCA CTX 396.51 LQ 1 other , NM_001284230,NM_033141 , , , , , , NM_016142,NM_016142 , , , , 939,939 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_016142;geneb_utr_codons=13 , , MV4_11_RNAseq_1 HSD17B12 chr11 43877448 + 3utr CNKSR3 chr6 154741848 - intron > 18 7 353 301 0.000 0.990 835 370 0.670 1.000 353 355 162 25 CAGAATGATAGACTCAAGCATAAAACTTGGCAGTTTTATCTGCTTCAAAATGCCATTGATCATTATTCCTGTATTTTCTCTGAAACTGATTATAAAAACCAATGTCCAGCTACTCTTTTGACACTTGAAGAAATGGAGATCGATTTGATTTGTTTATAAGCAGACACACTGCAATTTACAAAGATCTCTTTACGGTTTTATAAAATTATCTTCCAGTTTGTACATTTATATGGAATTGTTCTTTATCAAGGGTAGCTAATGACATGAAAATAATTGTGAAATATGGAATTATTTCTGACACATGAAGCCCACTAAACTATGCTTTCTTATAATGCATATTTCTTCTCAGTTTATTTTTTATTTTATTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACTACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCC CTX 378.35 LQ 0 other NM_016142 NM_173515 945 1668 geneB_no_inframe_contig_found geneB_transcripts=NM_173515 MV4_11_RNAseq_1 NA chr13 82264391 - intergenic LENG8 chr19 54972770 + 3utr > 28 0 341 131 0.890 0.000 307 0 0.030 0.000 412 426 721 321 GCTGCCCGCTTGCCCGTAGCTGACTCAGCTTCCTCATCTTCATCTCCATCCTCTTCCTCACCATCACCTTTTTTTTCCTCCCCTGTTGCAAATTCTCATGGTTTGGGTTGGGTGGTGGAGAGCGCGTGTCATCTGCGGGTGGCACTGCCCACGGTGGGCGGGCGGGCCTCTCTACTCGAAGGTGACCACGTTTAGATTCTGAGACGGGAAGTGGAGGGTGAATAGGTCACGGCGGCCTTTTTTTTTTTAGTTTAACTTTTCCTTTTTTGCTGTCTAGTCATCCTCGTCGGTCTTCTGCTTCTTGGTATCGACATCGTCATCCTCATCATCTTCAGCTGCCCGCTTGCCCGTAGCTGACTCAGCTTCCTCATCTTCATCTCCATCCTCTTCCTCACCATCACCTTCTTCTTCCTCCTCCTCTTCCTCCCAGTGTTTCTTCTGATTTTTTTTTCCCCTTTCCCTCCCTCCCTCTCCGCATTCTTCCCTTGGTTCAGCACAGGTAAAACGGTTTCCCTCCCTCCCTGCCTTCATGGATCACCAGCTCACGTCATGTTGCC CTX 307.00 LQ 0 other NM_052925 2403 geneB_no_inframe_contig_found geneB_transcripts=NM_052925;geneb_utr_codons=13 MV4_11_RNAseq_1 TUBA1B chr12 49521565 - 3utr DPP9 chr19 4675389 - 3utr > 7 0 121 79 0.000 0.000 283 0 1.000 0.000 122 125 59 117 AGCTGCAGCTTAACTAACAGATTTTAAATCTTTTTGGTTAGATTTTTTTCATTTGGTGATCATGTTTTTTCCATGTGTACCTGTAATATTTTTCCATCATATCTCAAAGTAAAGTCATTAACATCAAAAAAAAAAGTAAAAAGAAAAGAAAAAAAAAAAAAAAGAAACAAACCACCTCTACATATTATGGAAAGAAAATATTTT CTX 283.00 LQ 0 other NM_139159 2679 geneB_no_inframe_contig_found geneB_transcripts=NM_139159;geneb_utr_codons=13 MV4_11_RNAseq_1 NA chr3 40803013 - intergenic GNB2L1 chr5 180664023 - coding > 4 0 282 87 0.870 0.000 275 1 1.000 0.000 283 286 22 11469 GTGCTTTTAGTGCTGCTTCCTCCTGAAGGAACATCCTTCTGTAAGCCTTGCTTTTCCTCCTGTAGGCTGGCAGAGGACAGTGGAGCAGCCAACACACAAAACTACCGTTTGTGCATGGCTAAAGACCGTGGTGATTTTATAGCATCCTGGGCATTTCACATCCATGAAGTAGGAATTGGGGCTCTGCACCAGGCGTTTCTTCTTGTGTTTCCTCTTCTCCTCTTCTGGAGAGGGATGAAGGAGATCCTTTGCGAGAGGCATGTTCTCGTGTGCGTAGGTCGTCATCGGACAACCTGGTGCGAGTGTGGCAGGTGACCATTGGCACACGCTAGAAGTTTATGGCAGAGCTTTACAAATAAAAAAAAAAACTGGC CTX 275.00 LQ 0 NLoss 0 NM_006098 303 blat 908 954 geneA_no_transcript_IDs_found geneB_transcripts=NM_006098 MV4_11_RNAseq_1 EIF3H chr8 117657077 - 3utr FAM45A,FAM45B chr10 120896679 + 3utr > 8 9 351 135 0.000 0.500 91 224 0.010 0.010 351 357 796 1356 CCCCGCTCCCTGAGGAGGACCTGTCCAAACTCTTCAAACCACCACAGCCGCCTGCCAGGATGGACTCGCTGCTCATTGCAGGCCAGATAAACACTTACTGCCAGAACATCAAGGAGTTCACTGCCCAAAACTTAGGCAAGCTCTTCATGGCCCAGGCTCTTCAAGAATACAACAACTAAGAAAAGGAAGTTTCCAGAAAAGAAGTTAACATGAACTCTTGAAGTCACACCAGGGCAACTCTTGGAAGAAATATATTTGCATATTGAAAAGCACAGAGGATTTCTTTAGTGTCATTGCCGATTTTGGCTATAACAGTGTCTTTCTAGCCATAATAAAATAAAACAAAATCTTAAAAAAAAAAAAAAAAAAAAAGGTTTTTCCCGGCCTTTGAACAATTTGCCTATGAGAGGTTTTGATATATTTTTTACTTGAGTAGACAAATTTTATAATCCATTTTTAAACTATCGCAGAAGTAAACATTTGGCAAACGTTT CTX 269.50 LQ 0 other NM_003756 NM_207009 1074 geneB_no_inframe_contig_found geneB_transcripts=NM_207009;geneb_utr_codons=13 MV4_11_RNAseq_1 TSPAN9 chr12 3321106 + intron GNB2L1 chr5 180664023 - coding > 3 0 62 87 0.900 0.000 266 1 0.190 0.000 64 65 305 11469 TTTCTGGAGAGGGATGAAGGAGATCCTTTGCGAGAGGCATGTTCTCGTGTGCGTAGGTCGTCATCGGACAACCTGGTGCGAGTGTGGCAGGTGACCATTGGCACACGCTAGAAGTTTATGGCAGAGCTTTACAAATAAAAAAAAAAACTGGC CTX 266.00 LQ 0 NLoss 0,0,0 NM_001168320,NM_006675, ,, 2,3, ,, 63,63, ,, ,, NM_006098,NM_006098,NM_006098 303,303,303 8,8, blat,blat,blat 908,908,908 954,954,954 22,22, ,, FLERDEGDPLREACSRVRRSSSDNLVRVWQVTIGTR*KFMAELYK*KKKL,FLERDEGDPLREACSRVRRSSSDNLVRVWQVTIGTR*KFMAELYK*KKKL, TSPAN9:NM_001168320[1,2]-GNB2L1:NM_006098[8,8];TSPAN9:NM_006675[1,3]-GNB2L1:NM_006098[8,8]; geneB_transcripts=NM_006098 ,, 0,0, MV4_11_RNAseq_1 AP3D1 chr19 2101005 - 3utr SUZ12 chr17 30327652 + 3utr > 0 20 176 134 0.000 0.000 0 251 0.000 0.050 176 184 166 1533 GTCACTTTAGCATGTAATCCATTACAGAATCCCATGCAGTGATTCCAGGATTTGAAATTGTATGATGTGTTACATAAGAATTTATTTGCTATCGACATTCCCGTATAAAGAGAGAGACATATCACGCTGCTGTCATGATTTTGTGTCAAGATGATCCAATAAAGTTGTAAAACAGGAAAAAAAAAAAAAAAAAAAAGATTATTTTAGGGGAGATGTAGGTGTAGAATTATTGCTTATGTCATTTCTTAAGCAGTTATGCTCTTAATTCTTAAAAAAAGGCTAGCATTTTTTGCAAAAAAATTTGGTGATTCCCACCCC CTX 251.00 LQ 2 other , NM_001261826,NM_003938 , , , , , , NM_015355,NM_015355 , , , , 2220,2220 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_015355;geneb_utr_codons=13 , , MV4_11_RNAseq_1 LSM6 chr4 147110795 + coding CSF1R chr5 149473874 + intron > 0 8 141 139 0.000 0.830 0 246 0.000 0.020 143 155 563 343 CGAGGGGTCCTGGCTTGCCTGGATGGCTACATGAATATAGCCCTGGAGCAGACAGAAGAATATGTAAATGGACAACTGAAGAATAAGTATGGGGATGCATTTATCCGAGGAAACAATGTGTTGTACATCAGTACACAGAAGAGGGTAGAAGAGAAGAAGAAGGAGGTTCCTGCTGTGCCAGAAACCCTTAAGAAAAAGCGAAGGAATTTCGCAGCGCGGAAGATCAAGCGCCTCAGAAAGAAGTTTTCGCAAAATATGCTTCGAATGGCAAGGAGGACGATTACCTATGAAAAA CTX 246.00 LQ 2 CLoss NM_007080 230 NM_005211 geneB_no_inframe_contig_found geneB_transcripts=NM_005211;geneB_transcript_strand_disagree=NM_005211;geneb_utr_codons=13 MV4_11_RNAseq_1 SNRPB chr20 2442288 - 3utr NA chr4 181054005 + intergenic > 6 6 406 274 0.000 0.000 87 150 0.440 0.060 406 412 17 126 CTGGTATGAGACCTCCTATGGGTCCCCCAATGGGGATCCCCCCTGGAAGAGGGACTCCAATGGGCATGCCCCCTCCGGGAATGCGGCCTCCTCCCCCTGGGATGCGAGGCCTTCTTTGACCCTTGGCCACAGAGTATGGAAGTAGCTCCGCAGAGGCGTGGGCTCGATTCCTCAGGGCCACGTTACCACAGACCTGTTTGTTTCTTATGCTGTTGTTCGTGGAGTCTCATGGGATTGTCTGGTTTCCCTTACAGGGCCCCCTCCCCCGGGAATGCGCCCACCAAGGCCCTAGACTCATCTTGGCCCTCCTCAGCTCCCTGCCTGTTTCCCGTAAGGCTGTACATAGTCCTTTTATCTCCTTGTGGCCTATGAAACTGGTTTATAATAAACTCTTAAGAGAACATTAAAAAAAAAAAAAAAAAACTAAAGAAGACCAAACAGCATGTAATCAATATGGGAGAGATCAGACAAAACTGGCTCCACTACTTTGACCAGAGTTAGCAGCAGATATCTGGAGTAGGAAGTATCCTTTGCTTATGATTTTCCTCAAAGTGAGCTGCAATACAGCGACTCCATTTACTTAACAGTAGTAATCAGATGTTTGAAAGAGACAATAGTCCAGGGTTAAGCGTAGCAAATATGTCTCTTTTGTAAATGAAATATTTAAAACAGAAAACAAAGCACAG CTX 237.00 LQ 0 other , NM_003091,NM_198216 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 ARL14EPL chr5 115387543 - intron RTN4 chr2 55199947 - 3utr > 14 0 137 371 0.480 0.000 229 0 0.370 0.020 142 135 30 1089 CCTCGTTTCAAAGCACAAAGATCAAGTAATTTACACAAAAAACACCAAGGGTGGAGATGCCCCAGCTGCTGGTGAAGATGCATGAATAGGTCCAACCAGCTGTACATTTGGAAAAATAAAACTTTATTAAATCAAAAAAAAAAAAAAAAAGCCCTTTTCAGTTTGTGCACTGTGTATGGTCCGTGTAGATTGATGCAGATTTTCTGAAATGAAATGTTTGTTTAGACGAGATCATACCGGTAAAGCAGGAATGACAAAGCTTGCTTTTCTGGTATGTTCTAGGTGTATTGTGACTTTTACTGTTATATTAATTGCCAATATAAGTAAATATAGATTATATATGTATAGTGTTTCACAAAGCTTAGACCTTTACCTTCCAGCCACCCCACAGTGCTTGATATTTCAGAGTCAGTCATTGGTTATACATGTGTAGTTCCAAAGCACATAAGCTAGAAGAAGAAATATTTCTAGGAGCACTACCATCTGTTTTCAACATGAAATGCCA CTX 229.00 LQ 0 other ,,,, NM_001195581,NM_001195581,NM_001195581,NM_001195581,NM_001195581 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_007008,NM_020532,NM_153828,NM_207520,NM_207521 ,,,, ,,,, ,,,, ,,,, 600,3579,1122,1179,2961 ,,,, ,,,, ,,,, ;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_007008,NM_020532,NM_153828,NM_207520,NM_207521;geneb_utr_codons=13 ,,,, ,,,, MV4_11_RNAseq_1 MSI2 chr17 55761495 - intergenic ATP6V0A2 chr12 124244036 + 3utr > 5 0 77 82 0.490 0.000 221 1 0.160 0.000 78 70 49 133 ACAGATTCCACATGGGATGGTACATTATGTACAGAATACAGTAGTAGAGAACCTTCGAGGGAGGCTCTGGAACATTTTGACCTATATTCTTGCAAATTATGTTAATTTTTCATATTTTAGTTTGATTTTAGACAATTATTTTCAAAAAGAA CTX 221.00 LQ 1 other 0 NM_138962 NM_012463 2571 geneB_no_inframe_contig_found geneB_transcripts=NM_012463;geneb_utr_codons=13 MV4_11_RNAseq_1 SLC25A17 chr22 41161416 + intergenic TAF5 chr10 105148807 + 3utr > 0 6 93 57 0.000 0.680 1 210 0.010 0.520 94 95 0 61 GGATCATTTTGGTGACTCCAATTAAAGAATAAATGAAGATAAATAAATAAATACATTTCTAATTAAAGAAATAAATGAAGGTTACTTTTTTTTTTTTTTCCAGGTTCATAATTTATTGTACAAATTGAATTATCACATGATGAGTTGGCATT CTX 210.00 LQ 0 other 0,0,0 NM_001282727,NM_001282726,NM_006358 ,, ,, ,, ,, ,, ,, NM_006951,NM_006951,NM_006951 ,, ,, ,, ,, 2403,2403,2403 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_006951;geneb_utr_codons=6 ,, ,, MV4_11_RNAseq_1 FAM172A,MIR2277 chr5 93018871 - intron AKR7A2 chr1 19630582 - 3utr > 3 0 350 81 0.000 0.000 208 1 0.010 0.000 351 367 503 1941 GAAGGCAGTCCAATTAAAGTAACACTGGCAACTTTGAAAATGTCTGTACAGCCAACGGTTTCCCTTGGGGGCTTTGAAATAACACCACCAGTGGTCTTAAGGTTGAAGTGTGGTTCAGGGCCAGTGCATATTAGTGGACAGCACTTAGTAGCTGTGGAGGAAGATGCAGAGTCAGAAGATGAAGAGGAGGAGGATGTGAAACTCTTAAGTATATCTGGAAAGCGGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTTGCTGCTGATGAAGATGATGACGATGATGATGAAGAGGATGATGATGAAGATGATGATGATGATGATTTTGATGAAGAGGATGATGATGAAGAGTGCCTTGCTCCCTATTCACTTTACACTGTGAAAGGTGGGGGGTGAGTCCCACTTGAGCGCTTCCTGTTGAATAAAGCAGGCG CTX 208.00 LQ 0 other ,, NM_001163417,NM_001163418,NM_032042 ,, ,, ,, 971,779,1109 ,, ,, NM_003689,NM_003689,NM_003689 ,, ,, ,, ,, 1080,1080,1080 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_003689;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 CSTF1 chr20 54964746 + intron BCL11A chr2 60684830 - 3utr > 0 3 95 55 0.000 0.000 1 203 0.000 0.040 95 96 489 276 TGAACTCTTGATCTACATTTTCTACTTTCTATGCAACATCTGCACCTGATTATCTGAGCGGCATCTCCATTCTAACATGTCCCAAACAGAAGTCCAAAAAAAAGGAAAAAAAAAAAAAAAACCAATGTTTTGCAGTTTTTTTCATTGCCAA CTX 203.00 LQ 2 other ,,,,,,,,,,,,,,,,, NM_003600,NM_003600,NM_003600,NM_198433,NM_198433,NM_198433,NM_198434,NM_198434,NM_198434,NM_198435,NM_198435,NM_198435,NM_198436,NM_198436,NM_198436,NM_198437,NM_198437,NM_198437 ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, NM_018014,NM_022893,NM_138559,NM_018014,NM_022893,NM_138559,NM_018014,NM_022893,NM_138559,NM_018014,NM_022893,NM_138559,NM_018014,NM_022893,NM_138559,NM_018014,NM_022893,NM_138559 ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, 2230,,630,2230,,630,2230,,630,2230,,630,2230,,630,2230,,630 2322,2508,732,2322,2508,732,2322,2508,732,2322,2508,732,2322,2508,732,2322,2508,732 ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ;;;;;;;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_018014,NM_022893,NM_138559;geneb_utr_codons=13 ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, MV4_11_RNAseq_1 WIPF1 chr2 175435898 - intron CAP1 chr1 40537919 + 3utr > 0 9 81 66 0.000 0.040 1 198 0.000 0.020 81 85 52 2386 GAACTTCTCCTGTACTTCTCTCTTCATTCGCCAGGCTTTGAGGCCATTTCCCTATTCATTAAAGACTAATGTTTAAAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCACATGATTTCAAGGAGTCTGGCATTCCTGAATCCTTCTT CTX 198.00 LQ 0 other ,,, NM_001077269,NM_001077269,NM_003387,NM_003387 ,,, ,,, ,,, 1129,1129,1129,1129 ,,, ,,, NM_001105530,NM_006367,NM_001105530,NM_006367 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_CDS_mapping_exception=NM_001105530:-2;geneB_no_inframe_contig_found;geneB_CDS_mapping_exception=NM_006367:-2 geneB_transcripts=NM_001105530,NM_006367;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 STMN1,MIR3917 chr1 26227061 - 3utr CCDC170 chr6 151940149 + 3utr > 0 3 435 146 0.000 0.100 0 196 0.000 1.000 435 450 1639 6 AACTGACTTTCTCCCCATCCCCTTCCTAAATATCCAAAGACTGTACTGGCCAGTGTCATTTTATTTTTTCCCTCCTGACAAATATTTTAGAAGCTAATGTAGGACTGTATAGGTAGATCCAGATCCAGACTGTAAGATGTTGTTTTAGGGGCTAAAGGGGAGAAACTGAAAGTGTTTTACTCTTTTTCTAAAGTGTTGGTCTTTCTAATGTAGCTATTTTTCTTGTTGCATCTTTTCTACTTCAGTACACTTGGTGTACTGGGTTAATGGCTAGTACTGTATTGGCTCTGTGAAAACATATTTGTGAAAAGAGTATGTAGTGGCTTCTTTTGAACTGTTAGATGCTGAATATCTGTTCACTTTTCAATCCCAATTCTGTCCCAATCTTACCAGATGCTACTGGACTTGAATGGTTAATAAAACTGCACAGTGCTGAAACTACATCTCAGAAAAAAAAAAAAAAAAAGTTAATGTCCAAAAATGACAGATTTACAAGTGTAAGCTATATGATTTCTTCAAAAAGCAAAAGCAATATACCTAATTCATTTGGATCAAACTTACATAGGTCTCAGGTCCTGTAAGAAACTTGCCTGTTC CTX 196.00 LQ 0 other ,,, NM_001145454,NM_005563,NM_203399,NM_203401 ,,, ,,, ,,, 378,,, ,,, ,,, NM_025059,NM_025059,NM_025059,NM_025059 ,,, ,,, ,,, ,,, 2148,2148,2148,2148 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_025059;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 ARHGDIB chr12 15094964 - 3utr FAM45A,FAM45B chr10 120896686 + 3utr > 6 2 388 54 0.000 0.490 89 194 0.200 0.030 389 391 1198 1424 TACTGCCACATTTCCTTATTGATGCATCTTTTCCCACCCTGTCACTCAACGTGGTCCCTAGAACAAGAGGCTTAAAACCGGGCTTTCACCCAACCTGCTCCCTCTGATCCTCCATCAGGGCCAGATCTTCCACGTCTCCATCTCAGTACACAATCATTTAATATTTCCCTGTCTTACCCCTATTCAAGCAACTAGAGGCCAGAAAATGGGCAAATTATCACTAACAGGTCTTTGACTCAGGTTCCAGTAGTTCATTCTAATGCCTAGATTCTTTTGTGGTTGTTGCTGGCCCAATGAGTCCCTAGTCACATCCCCTGCCAGAGGGAGTTCTTCTTTTGTGAGAGACACTGTAAACGACACAAGAGAACAAGAATAAAACAATAACTGTGAAAAAAAAAAAAAAAAAAAAAAAAGGTTTTTCCCGGCCTTTGAACATTTTGCCTAT CTX 194.00 LQ 0 other NM_001175 NM_207009 1074 geneB_no_inframe_contig_found geneB_transcripts=NM_207009;geneb_utr_codons=13 MV4_11_RNAseq_1 TFRC chr3 195776327 - 3utr CASP1 chr11 104905145 - coding > 0 4 92 143 0.000 0.500 1 194 0.000 0.080 92 90 2688 293 AGACTAGTGACAAGCTCCTGGTCTTGAGATGTCTTCTCGTTAAGGAGATGGGCCTTTTGGAGGTAAAGGATAAAATGAATGAGTTCTGTCATAAATGGCTTACTGGATGAATTATTACAGACAAGGGTGCTGAACAAGGAAGAGATGGAGAAAGTAAAACGTGAAAATGCTACAGTTATGGATAAGACCCGAGCTTTGATTGACTCCGTTATTCCGAAAGGGGCACAGGCATG CTX 194.00 LQ 1 NLoss 0,0,0,0,0,0,0,0,3,3,3,3 NM_001128148,NM_003234,NM_001128148,NM_003234,NM_001128148,NM_003234,NM_001128148,NM_003234,,,, ,,,,,,,,,,, 19,19,19,19,19,19,19,19,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001223,NM_001223,NM_001257118,NM_001257118,NM_001257119,NM_001257119,NM_033292,NM_033292,NM_001223,NM_001257118,NM_001257119,NM_033292 22,22,22,22,22,22,22,22,22,22,22,22 2,2,2,2,2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 64,64,64,64,64,64,64,64,64,64,64,64 1152,1152,1215,1215,1152,1152,1215,1215,1152,1215,1152,1215 30,30,30,30,30,30,30,30,,,, ,,,,,,,,,,, RLVTSSWS*DVFSLRRWAFWR*RIK*MSSVINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQA,RLVTSSWS*DVFSLRRWAFWR*RIK*MSSVINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQA,RLVTSSWS*DVFSLRRWAFWR*RIK*MSSVINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQA,RLVTSSWS*DVFSLRRWAFWR*RIK*MSSVINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQA,RLVTSSWS*DVFSLRRWAFWR*RIK*MSSVINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQA,RLVTSSWS*DVFSLRRWAFWR*RIK*MSSVINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQA,RLVTSSWS*DVFSLRRWAFWR*RIK*MSSVINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQA,RLVTSSWS*DVFSLRRWAFWR*RIK*MSSVINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQA,,,, TFRC:NM_001128148[1,19]-CASP1:NM_001223[2,9];TFRC:NM_003234[1,19]-CASP1:NM_001223[2,9];TFRC:NM_001128148[1,19]-CASP1:NM_001257118[2,9];TFRC:NM_003234[1,19]-CASP1:NM_001257118[2,9];TFRC:NM_001128148[1,19]-CASP1:NM_001257119[2,8];TFRC:NM_003234[1,19]-CASP1:NM_001257119[2,8];TFRC:NM_001128148[1,19]-CASP1:NM_033292[2,10];TFRC:NM_003234[1,19]-CASP1:NM_033292[2,10];;;; geneB_breakpoint_not_mapped_to_CDS=NM_033293;geneB_breakpoint_not_mapped_to_CDS=NM_033294;geneB_breakpoint_not_mapped_to_CDS=NM_033295 geneB_transcripts=NM_001223,NM_001257118,NM_001257119,NM_033292,NM_033293,NM_033294,NM_033295;geneB_intronic=NM_033293;geneB_intronic=NM_033294;geneB_intronic=NM_033295 ,,,,,,,,,,, 0,0,0,0,0,0,0,0,,,, MV4_11_RNAseq_1 NA chr9 46025936 + intergenic HSD17B12 chr11 43877440 + 3utr > 3 35 99 444 0.990 0.000 174 1651 0.370 0.820 100 100 47 174 CGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTCAGTTTAAATGTATGTAAATATCGAAGCTATATGGTATGATTTATAAAGATAAATGGGCCAAAGTGTACATTGAGACTGGCAGCCATCTATGGTACCACTGAAACCCTGACCCAGAAAAGTGGCTTGCTTGGACACCCAGCTGCCTTTGTTTCTGCATTAAACCAATATTGATCACACATATGACACAGGCTAGTCCTATAAAAGTAATGACTTCATAGAAATGGCATTATAATTTTTAAGTTGATACTCTACAGGTAGCTATTGATATAATTAGTTTTAATAAAACATGCTGCAACCATGGTATACAACAAAAATACATTTCTTTGGTGATTGAAATTAAGGCCGTATTTACAATGACTTAATATAAGACTGACTTTTATCCTGCTTCATAACTTGTATGGAGAACTCACCAAGAAAGAATTCAATACTGTGAAATATGCA CTX 190.51 LQ 0 other NM_016142 939 geneB_no_inframe_contig_found geneB_transcripts=NM_016142;geneb_utr_codons=13 MV4_11_RNAseq_1 RMI1 chr9 86618971 + 3utr CSTF3 chr11 33117081 + intron > 13 4 405 233 0.000 0.990 504 185 1.000 0.030 405 402 73 423 TTTTTATTTTGCTGATTATAATATTTGGTATATTTAAGGTAATCTAGTTAACTAGATGCTATTTCATAGATTATATTGAATGATTTAAAACTTTATTTTCAAGGATAGTTTATTTTAAATGGCATATTGAAAACATCATTATTAAGATCCAGTAGGTAGGACATTTATTGGATTAAAATGAAGCATTTATCTATGTCTTTAGGTGTCATTGTTCCCTTTCTGAATTAGCTGTACATATAAGCCTTCCTTTGGTTTTAAGTACTGATTTTTTTTTAAAAAAAAGAGGGACTGTTTACCATTCTTCCACTGTGCTGTTATAAAGTTGTATTTGAAAGGTAATGTTGTTTTTATTAATCTTTTGTCTTAAAATAATTTAAAGTGCTTTGAATTTTAAAACATTAAACAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCCTCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGC CTX 190.04 LQ 2 other NM_024945 NM_001326 geneB_no_inframe_contig_found geneB_transcripts=NM_001326;geneB_transcript_strand_disagree=NM_001326 MV4_11_RNAseq_1 NKX2-2 chr20 21468224 + intergenic SLITRK1 chr13 84479342 - intron > 4 15 111 299 0.670 0.990 275 564 0.330 0.330 113 114 9 45 GTCAGGGTTTCAGTGGTACCATAGATGGCTGCCAGTCTCAATGTACACTTTGGCCCATTTATCTTTATAAATCATACCATATAGCTTCGATATTTACATACATTTAAACTGAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAATAAAA CTX 188.87 LQ 0 other 0 NM_002509 geneB_no_transcripts MV4_11_RNAseq_1 INHBA-AS1 chr7 41773788 + intron NA chr7 41911606 + intergenic > 20 20 293 151 0.000 0.000 875 1011 0.220 0.240 293 293 208 84 GACTCATTCTTACCGACTCTGATTTCTAAGCTGTGAAGCACTGCTGAAGGAAGTCATTTTGCTTTGCTCACTGGGAAATGACAAATTCTATGGCCTTCAGAAACGGCTCCCAACAAACGTAACCAGAGAGGTCTCAGTACCATCAGGTTCCCAGGATTATCTGCTGCGTTGCTCAGCCATCCTTAGCTGATGCTCCAGAGCCCAGGACAGCTACTTATGCTCCAATTCATTGCTGTGGCAGCAGGAAAAAGAAAACTACAAGGAAAGGGATATCTCTTCTCTTGAAGGACAGCTCACAGTGAAGGACCCTGAGAGGGCAGAGCCATGTGATGGAATGAGCCATGATCCCTGAGTCCTCACCTCAGGGAGAGATGTGCAGAAGAGCCACCCAAGTGGTGATGTGCTGGTAAACATTTAGTGACCCATTTGAGGTGTGGGCGGAG DEL 188.60 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 ACAD9 chr3 128631940 + 3utr CXorf21 chrX 30576940 - intergenic > 1 6 93 78 0.000 0.000 14 172 0.140 0.080 96 100 29 2057 AGCTTAAAAGCTCTGTCGGGGTCATTAATTTAAACTAGAAGCAGAGGCACTTAAAACATGTACCAGGAACCATTTAACAAAGAATATAAAATGTCAAAAAAAAAAAAAAAAAAAAGTCAAAAGGTTTCAGGGTAAAGAGTTAAGAATATATTTGTTACCCAAATAAATTCATCCAACT CTX 186.00 LQ 0 other 0 NM_014049 NM_025159 906 geneB_no_transcripts MV4_11_RNAseq_1 GOLGA6L10 chr15 82664400 - intron MS4A6A chr11 59941215 - intron > 8 0 391 93 0.670 0.000 186 0 1.000 0.000 392 378 52 6274 CAACGTTGTTATCCAGGAGAATGGGTCTCTTGTTGAAATCCGAAATTTCTTGGGTGAAAAATACATCCGCAGGGTTCGGATGAGACCAGGTGTTGCTTGTTCAGTATCTCAAGCCCAGAAAGATGAATTAATCCTTGAAGGAAATGACATTGAGCTTGTTTCAAATTCAGCGGCTTTGATTCAGCAAGCCACAACAGTTAAAAACAAGGATATCAGGAAATTTTTGGATGGTATCTATGTCTCTGAAAAAGGAACTGTTCAGCAGGCTGATGAATAAGATCTAAGAGTTACCTGGCTACAGAAAGAAGATGCCAGATGACACTTAAGACCTACTTGTGATATTTAAATGATGCAATAAAAGACCTATTGATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAACAACAAAGAAACAACAACAAAAATCAAGAAGAAATACAAAGGGGTTCAGATACATAGACAGGGATGTCAAT CTX 186.00 LQ 0 other ,,, NM_001164465,NM_001164465,NM_001164465,NM_001164465 ,,, ,,, ,,, ,,, ,,, ,,, NM_001247999,NM_022349,NM_152851,NM_152852 ,,, ,,, ,,, 634,550,446,550 762,678,537,747 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001247999,NM_022349,NM_152851,NM_152852 ,,, ,,, MV4_11_RNAseq_1 DNAJC15 chr13 43681508 + 3utr FOXN2 chr2 48574782 + intron > 0 4 146 60 0.000 0.000 0 184 0.000 0.420 147 147 514 22 GAAACAACCACCAAACATTGATGCTTAAGGACCACACTGAAGGAAAAAAAAAGAGGGGACTTCGAAAAAAAAAAAAAGCCCTGCAAAATATTCTAAAACATGGTCTTCTTAATTTTCTATATGGATTGACCACAGTCTTATCTTCCAAATTTATCATTGGTCCACCTTCAAATAATATTATACCATTTCACGTAACTGGCTCTTTAC CTX 184.00 LQ 0 other NM_013238 NM_002158 537 1296 geneB_no_inframe_contig_found geneB_transcripts=NM_002158 MV4_11_RNAseq_1 LYZ chr12 69747295 + 3utr NTHL1 chr16 2115520 + intron > 17 3 36 200 0.990 0.000 183 70 0.010 0.250 36 36 19428 36 CTCCAGTACATTCCGTTCTTTTTTTTTTTGAGACAGCCTGGGCGACAGAGCAAGACTCGATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGGTGTTTGTGGTAGAAAGTGTTCTCACGGCTGCTGACTCAGAACCATGAGCCTGTGTGTAAGTCCTGGCCTTCTCTTCAAAGGTGATGGCCCGCTCCCTCTCCCCACCCCCGGAGCTGGAAGAAAGGGATGTGGCCGCATACCCGG CTX 183.00 LQ 1 other 0,0,0,3,3,3 NM_000239,NM_000239,NM_000239,,, ,,,,, 4,4,4,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_000548,NM_001077183,NM_001114382,NM_000548,NM_001077183,NM_001114382 534,534,534,534,534,534 16,16,16,,, tuple,tuple,tuple,tuple,tuple,tuple 1600,1600,1600,1600,1600,1600 5424,5223,5355,5424,5223,5355 57,57,57,,, ,,,,, SSTFRSFFF*DSLGDRARLDLKKKKKKKKKVFVVESVLTAADSEP*ACV*VLAFSSKVMARSLSPPPELEERDVAAYP,SSTFRSFFF*DSLGDRARLDLKKKKKKKKKVFVVESVLTAADSEP*ACV*VLAFSSKVMARSLSPPPELEERDVAAYP,SSTFRSFFF*DSLGDRARLDLKKKKKKKKKVFVVESVLTAADSEP*ACV*VLAFSSKVMARSLSPPPELEERDVAAYP,,, LYZ:NM_000239[1,4]-TSC2:NM_000548[16,42];LYZ:NM_000239[1,4]-TSC2:NM_001077183[16,40];LYZ:NM_000239[1,4]-TSC2:NM_001114382[16,41];;; geneB_transcripts=NM_000548,NM_001077183,NM_001114382 ,,,,, 1,1,1,,, MV4_11_RNAseq_1 USP47 chr11 11969547 + coding LSM7 chr19 2328405 - coding > 3 0 158 86 0.000 0.000 182 0 0.090 0.000 159 165 152 7408 GTGAATATGATGAGAGTGGCAAGAGTAGGGGAGAAATGCAGTACATGTATTTCAAAGCTGAACCTTATGCTGCAGATGAAGGTTCTGGGGAAGGACATAAATGGTTGATGGTGCATGTTGATAAAAGAATTACTCTGGCAGCTTTCAAACAACATTTACGTGATGTTCCAGGGAGGCCGCGAAGGTGAGGAGGCTCCCGCTGTCGGTACCCCCTCTTTAAAAATTTCAAATAAACCCAGCAACAGAGATG CTX 182.00 LQ 0 Fusion , NM_001282659,NM_017944 , , , 3147,2943 , , NM_016199,NM_016199 , , , 78,78 312,312 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_016199 , , MV4_11_RNAseq_1 SHQ1 chr3 72798786 - 3utr MIR4999 chr19 8480590 + intron > 3 0 181 90 0.000 0.000 176 1 0.030 0.000 182 178 302 36 TTTTGTTTTCCTTGCCGCGACTGTGAAGATAAAGTTCAAAAGTATTTTTACCAAAGTGTAGCTAATATTTCAAGCTGAAAATAATAGTTCTACTGCCCGTGTCTCCAGAATGTAGAGCCCATCAATATTTTTATTTTAGGAGGTGTACTTGACACCCAATAAACTGCACGTATCAAAAGTGAAACTCCATCTCAAAAAAAAAAAAAAACAAAAAACAAAAAAAAAACCAGACAAAAGAAAGAAGAGAAATAAATCTCCTGGGCACTGGG CTX 176.00 LQ 0 other ,, NM_018130,NM_018130,NM_018130 ,, ,, ,, ,, ,, ,, NM_001005415,NM_001005416,NM_016496 ,, ,, ,, ,, 741,531,741 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001005415,NM_001005416,NM_016496;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 PIK3AP1 chr10 98510028 - intron TMA16 chr4 164428219 + coding > 12 1 472 233 0.670 0.000 170 7 0.210 0.010 473 479 38 459 GTCACTGCCTGGTACTTCCAGCCAACCTCGTGAGCCAGGCGCCCCAGATAGGCAAACTTTCTTGTAGGCTTCAGACGCACGACCTTGAGGGCAGCAGGAACCACCATCCGCTTTTTCTTGTCGTAGGGCGGTGGGATGCCGTCAAACACCTTGAGACGGTCCAGAGCGGCCTGGCCTCGCTTGGTTTTGTGGGGCAGCATACCTCGCACGGTCCGCCAGAAGATGCGGCTGGGGGCCCGGAAGTGGTAGGGGCCTCGGGAAGGGTTGGTGTTCATCCGCTTGCGGAGGAAAGCCAGGTACTTCAACTTGTTTCTGTAGAAATTGCCAGAAATGTTGATGCCTTCACAGCGTACGACCACCACCTTCCGGCCCAGCAGTACCTGTTTAGCCACGATGGCCGCCAGGCGGCCCAGGAGATGGCCTCGACCATCAAGCACCAGGACCTGCACCTCCGCCATCTTCGGCAGCCGCTTGGAAAAAAAAAAAGTCATCCATCCATATAGTAGAAAAGCAGCTCAAATTACGAGAGAGGCCCACAAACAAGAAAAAAAGGAAAAATTGAAGAATGAAAAGGCCTTGCGTCTCAACCTTGTTGGTGAAAAACTGCAATGGTTTCAAAATCATCTTGATCCCCAAAAAAAGAGATATTCAAAGAAAGATGCTTGTGAACTAATTGAAAGGTACTTAAATCGATTCAGCAGTGAGCTGGAG CTX 172.31 LQ 0 NLoss 3 NM_018352 13 blat 38 612 geneA_no_transcript_IDs_found geneB_transcripts=NM_018352 MV4_11_RNAseq_1 LYZ chr12 69747295 + 3utr ZNF564 chr19 12635896 - intergenic > 22 2 125 64 0.000 0.480 489 170 0.010 1.000 125 127 19428 10 ATTTTATATTAAGCCTACAACATTTTTCAGTTTGCAAATAGAACTAATACTGGTGAAAATTTACCTAAAACCTTGGTTATCAAATACATCTCCAGTACATTCCGTTCTTTTTTTTTTTGAGACAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAATAAAAAAGATTGAAAGCAAAGT CTX 171.04 LQ 1 other 0 NM_000239 NM_144976 1662 geneB_no_transcripts MV4_11_RNAseq_1 PPM1H chr12 63359818 + intron C8orf76,ZHX1-C8orf76,ZHX1 chr8 124262099 - 3utr > 1 5 89 74 0.000 0.000 8 166 0.600 0.030 89 77 4 483 CTCCAAAGGCATCTGGCAAGAAAGCATAAGTGGCAATCATAAAAAGTAATAAAGGTTCTTTTTGACCTGTTGGTAAAAAAAAAAAAAAAAAAAAAAAACCCTAATTTATTACTATGTCTTATTTATCAGACCCTGCACTAAGATTAAAAGT CTX 170.85 LQ 1 other ,, ,, ,, ,, ,, ,, ,, ,, NM_001017926,NM_001204180,NM_007222 ,, ,, ,, ,22, 2622,879,2622 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001017926,NM_001204180,NM_007222;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 CCNB2 chr15 59417246 + 3utr SAV1 chr14 51125831 - intron > 0 3 93 67 0.000 0.000 1 168 0.000 0.040 93 84 4 113 GTCCTCTGGTCTATCTCATGAAACCTCTTCTCAGACCAGTTTTCTAAACATATATTGAGGAAAAATAAAGCGATTGGTTTTTCTTAAGGTATCTCTCCCAACCAAAAAAAAAAAAAAAAAAAAATTCTTTACAGCAGTTGATACACTGCTT CTX 168.00 LQ 0 other NM_021818 535 1152 geneB_no_inframe_contig_found geneB_transcripts=NM_021818 MV4_11_RNAseq_1 PSMB2 chr1 36068739 - 3utr DDX21 chr10 70743455 + 3utr > 1 2 127 68 0.000 0.000 21 166 0.010 0.050 127 127 162 1052 TCATGTCCTCCCTCCCACTTGCCAGGGAACTTTTTTTTGATGGGCTCCTTTATTTTTTTCTACTCTTTTCAGGCGCACTCTTGATAAATGGTTAATTCAGAATAAAGGTGACTATGGATATAATTGAAAAAAAAAAAAAAAAAAAAAAGAACCAAACCACTGGAAATAATCAAATGCAAAAAGGTAACAAATTCA CTX 166.63 LQ 0 other ,,,,, NM_001199779,NM_001199779,NM_001199780,NM_001199780,NM_002794,NM_002794 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001256910,NM_004728,NM_001256910,NM_004728,NM_001256910,NM_004728 ,,,,, ,,,,, ,,,,, ,,,,, 2148,2352,2148,2352,2148,2352 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001256910,NM_004728;geneb_utr_codons=13 ,,,,, ,,,,, MV4_11_RNAseq_1 APLP2 chr11 129902686 - intron RTN4 chr2 55199947 - 3utr > 0 4 84 367 0.000 0.050 1 166 0.000 0.020 89 76 0 1089 AATGAACAAGCCGTGCAGTGAGGACCCCCAAGAGGCCCATTTCCCCCAATAAAAGAGATTTGGGAGTCTAGAAAAAAAAAAAAAAAAAGCCCTTTTCAGTTTGTGCACTGTGTATGGTCCGTGTAGATTGATGCAGATTTTCTGAAATGAAATGTTTGTTTAGACGAGATCATACCGGTAAAGCAGGAATGACAAAGCTTGCTTTTCTGGTATGTTCTAGGTGTATTGTGACTTTTACTGTTATATTAATTGCCAATATAAGTAAATATAGATTATATATGTATAGTGTTTCACAAAGCTTAGACCTTTACCTTCCAGCCACCCCACAGTGCTTGATATTTCAGAGTCAGTCATTGGTTATACATGTGTAGTTCCAAAGCACATAAGCTAGAAGAAGAAATATTTCTAGGAGCACTACCATCTGTTTTCAACATGAAATGCCA CTX 166.00 LQ 0 other ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_007008,NM_020532,NM_153828,NM_207520,NM_207521 ,,,, ,,,, ,,,, ,,,, 600,3579,1122,1179,2961 ,,,, ,,,, ,,,, ;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_007008,NM_020532,NM_153828,NM_207520,NM_207521;geneb_utr_codons=13 ,,,, ,,,, MV4_11_RNAseq_1 TSPAN9 chr12 3321100 + intron TPT1 chr13 45914319 - coding > 17 118 140 122 0.870 0.660 220 63 0.100 0.010 141 155 561 75108 GTGATTTTATAGCATCCTGGGCATTTCACATCCATGAGTGAGTAAAATGGGCTCTGCACCAGGCGTATCTTCTTGTGTTTCCTCTTCTCCTCTTCTGGAGAGGGATGAAGGAGATCCTTTGCGAGAGGCATGTTCTCGTGTGCGTAGGGGGGGAAGATGGTCAGTAGGACAGAAGGTAACATTGATGACTCGCTCATTGGTGGAAATGCCTCCGCTGAAGGCCCCGAGGGCGAAGGTACCGAAAGAAGAGTAATCACTGGTGTCGATATTGTAATGAACAATAAAGGGAACGTAAGAAGCG CTX 165.98 LQ 0 upTSS 0,0,0,0,0,0,3,2,3 NM_001168320,NM_006675,NM_001168320,NM_006675,NM_001168320,NM_006675,,, ,,,,,,,, 2,3,2,3,2,3,,, ,,,,,,,, 63,63,63,63,63,63,,, ,,,,,,,, ,,,,,,,, NM_001286272,NM_001286272,NM_001286273,NM_001286273,NM_003295,NM_003295,NM_001286272,NM_001286273,NM_003295 35,35,1,1,35,35,35,1,35 3,3,2,2,3,3,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 103,103,1,1,103,103,103,1,103 594,594,417,417,519,519,594,417,519 52,52,52,52,52,52,,, ,,,,,,,, VIL*HPGHFTSMSE*NGLCTRRIFLCFLFSSSGEG*RRSFARGMFSCA*GGKMVSRTEGNIDDSLIGGNASAEGPEGEGTERRVITGVDIVMNNKGNVRS,VIL*HPGHFTSMSE*NGLCTRRIFLCFLFSSSGEG*RRSFARGMFSCA*GGKMVSRTEGNIDDSLIGGNASAEGPEGEGTERRVITGVDIVMNNKGNVRS,VIL*HPGHFTSMSE*NGLCTRRIFLCFLFSSSGEG*RRSFARGMFSCA*GGKMVSRTEGNIDDSLIGGNASAEGPEGEGTERRVITGVDIVMNNKGNVRS,VIL*HPGHFTSMSE*NGLCTRRIFLCFLFSSSGEG*RRSFARGMFSCA*GGKMVSRTEGNIDDSLIGGNASAEGPEGEGTERRVITGVDIVMNNKGNVRS,VIL*HPGHFTSMSE*NGLCTRRIFLCFLFSSSGEG*RRSFARGMFSCA*GGKMVSRTEGNIDDSLIGGNASAEGPEGEGTERRVITGVDIVMNNKGNVRS,VIL*HPGHFTSMSE*NGLCTRRIFLCFLFSSSGEG*RRSFARGMFSCA*GGKMVSRTEGNIDDSLIGGNASAEGPEGEGTERRVITGVDIVMNNKGNVRS,,, TSPAN9:NM_001168320[1,2]-TPT1:NM_001286272[3,6];TSPAN9:NM_006675[1,3]-TPT1:NM_001286272[3,6];TSPAN9:NM_001168320[1,2]-TPT1:NM_001286273[2,5];TSPAN9:NM_006675[1,3]-TPT1:NM_001286273[2,5];TSPAN9:NM_001168320[1,2]-TPT1:NM_003295[3,6];TSPAN9:NM_006675[1,3]-TPT1:NM_003295[3,6];;; geneB_transcripts=NM_001286272,NM_001286273,NM_003295;reannotated geneB from TPT1,SNORA31 to TPT1 ,,,,,,,, 0,0,0,0,0,0,,, MV4_11_RNAseq_1 POLR2E chr19 1088433 + 3utr RSF1 chr11 77413540 - coding > 0 4 215 138 0.000 0.000 0 164 0.000 0.110 216 211 2263 70 CAACCTCCTACAACAACCGAGAACTCCAGAGCTGGCATCTCGCACCCTGGTGGCTTGAGCGCGTGCACGGCTGTGAATGGAGTAAAGAGCCGAGGCCGGGCGGGGGCCGCCACGCATCAGGGCCCCCGAGGGAGGGAAGACGAGGGGTGGAAGGCCGAGGGCCCAGGAGGAAGCAGTGGCTGGTGGGAGACCCGGACCCCAAACCCCCAACAGAGGAACAGAAAGAAAGTGAAAAGATGAAAAGTGAGGAGCAGCCTATGGATTTAGAAAACCGTTCTACAGCCAATGTTCTAGAAGAGACTACTGTGAAAAAAGAAAAAGAAGATGAAAAGGAACTTGTGAAACTGCC CTX 164.00 LQ 0 NLoss 0,3 NM_002695, , 8, , , , , NM_016578,NM_016578 245,245 6, tuple,tuple 734,734 4326,4326 70, , TSYNNRELQSWHLAPWWLERVHGCEWSKEPRPGGGRHASGPPREGRRGVEGRGPRRKQWLVGDPDPKPPTEEQKESEKMKSEEQPMDLENRSTANVLEETTVKKEKEDEKELVKL, POLR2E:NM_002695[1,8]-RSF1:NM_016578[6,16]; geneB_transcripts=NM_016578 , 2, MV4_11_RNAseq_1 HSD17B12 chr11 43877448 + 3utr LGR6 chr1 202222926 + intron > 18 3 353 114 0.000 0.990 835 152 0.670 1.000 353 355 162 6 CAGAATGATAGACTCAAGCATAAAACTTGGCAGTTTTATCTGCTTCAAAATGCCATTGATCATTATTCCTGTATTTTCTCTGAAACTGATTATAAAAACCAATGTCCAGCTACTCTTTTGACACTTGAAGAAATGGAGATCGATTTGATTTGTTTATAAGCAGACACACTGCAATTTACAAAGATCTCTTTACGGTTTTATAAAATTATCTTCCAGTTTGTACATTTATATGGAATTGTTCTTTATCAAGGGTAGCTAATGACATGAAAATAATTGTGAAATATGGAATTATTTCTGACACATGAAGCCCACTAAACTATGCTTTCTTATAATGCATATTTCTTCTCAGTTTATTTTTTATTTTATTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTC CTX 160.35 LQ 0 other ,, NM_016142,NM_016142,NM_016142 ,, ,, ,, ,, ,, ,, NM_001017403,NM_001017404,NM_021636 ,, ,, ,, 428,299,272 2904,2487,2748 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001017403,NM_001017404,NM_021636 ,, ,, MV4_11_RNAseq_1 CENPK chr5 64814197 + 3utr RFC1 chr4 39313139 - coding > 0 4 142 143 0.000 0.000 0 160 0.000 0.020 151 141 679 336 TTCCGATCTTTTTATGCCTAGAATATTATCTACCTGCATTCTTATCCATATAGTTTAAAACACTAAAGCACTCACTGAATAAGAAATGACCATTTAAAAATGAATAATAGATGGCAGCACATGCCATTTTGCAATAAAAGTAAGATGGCCTGTTGAATCTGATTCGGACTATGCCAGGCAAGAAATCCAAGTATGAAATAGCAGTTGAAACTGAGATGAAGAAAGAGTCCAAACTGGAGAGAACACCCCAAAAAAATGTCCAAGGAAAAAGAAAAATTAGTCCA CTX 160.00 LQ 1 NLoss 0,0,0,0,3,3 NM_001267038,NM_022145,NM_001267038,NM_022145,, ,,,,, 11,11,11,11,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001204747,NM_001204747,NM_002913,NM_002913,NM_001204747,NM_002913 472,472,472,472,472,472 12,12,12,12,, blat,blat,blat,blat,blat,blat 1414,1414,1414,1414,1414,1414 3447,3447,3444,3444,3447,3444 46,46,46,46,, ,,,,, PIFLCLEYYLPAFLSI*FKTLKHSLNKK*PFKNE**MAAHAILQ*K*DGLLNLIRTMPGKKSKYEIAVETEMKKESKLERTPQKNVQGKRKISP,PIFLCLEYYLPAFLSI*FKTLKHSLNKK*PFKNE**MAAHAILQ*K*DGLLNLIRTMPGKKSKYEIAVETEMKKESKLERTPQKNVQGKRKISP,PIFLCLEYYLPAFLSI*FKTLKHSLNKK*PFKNE**MAAHAILQ*K*DGLLNLIRTMPGKKSKYEIAVETEMKKESKLERTPQKNVQGKRKISP,PIFLCLEYYLPAFLSI*FKTLKHSLNKK*PFKNE**MAAHAILQ*K*DGLLNLIRTMPGKKSKYEIAVETEMKKESKLERTPQKNVQGKRKISP,, CENPK:NM_001267038[1,11]-RFC1:NM_001204747[12,25];CENPK:NM_022145[1,11]-RFC1:NM_001204747[12,25];CENPK:NM_001267038[1,11]-RFC1:NM_002913[12,25];CENPK:NM_022145[1,11]-RFC1:NM_002913[12,25];; geneB_transcripts=NM_001204747,NM_002913 ,,,,, 2,2,2,2,, MV4_11_RNAseq_1 LOC101929596 chr2 38708933 - intron SPIN1 chr9 91093382 + 3utr > 10 0 297 81 0.670 0.000 157 1 0.250 0.000 305 316 34 456 CCGGATGTGAGGCAGCAGTTTCTCCAGAGCTGGGTTGTTTTCCAGGTGCCCTCGGATGGCCTTGCGCATCATGGTGTTCTTGCCCATCAGCACCACAGCCTTCCCGCGAAGGGACATGCGGATCTGCTGCATCTGCTTGGAGCCCACATTGTCTGCTCCCACAATGAAACATTTCGGATAATCATCCAATAGTTGGATGATCTTAAGGAAGTAGTTGGACTTCCAGGTCGCCCTGTCTTCCCTGGGCATCACGGCGGTGCGTCAGGGATTGCCACGCAGGGTTTAAAGACGATGTCACTTCCACGAGGACGCCTGGGTCTTCGTGTTCACATTTTAAAATTAGGTAAATGACCTCATCTTTCAAGCTTGAATTCATTTTTAATTTTAATTTTATTT CTX 157.00 LQ 0 other NM_006717 789 geneB_no_inframe_contig_found geneB_transcripts=NM_006717;geneb_utr_codons=13 MV4_11_RNAseq_1 AASDH chr4 57204463 - 3utr PTGS1 chr9 125152217 + intron > 4 0 72 76 0.000 0.000 156 1 0.360 0.000 74 75 14 22 AAGATATTTGAAAATATTTTACCATTATACATCATGTGGACTTATTTTATATTAAAGAAAGAAGATTATATTTTGGCAACAGAGTGAGACAGTGTCTAAAAAAAAACCCACAAAAAAAAAAATGAGGAAGCTGAGACTCAGAGGGGCTTCC CTX 156.00 LQ 0 other ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001286668,NM_001286668,NM_001286668,NM_001286668,NM_001286668,NM_001286668,NM_001286668,NM_001286669,NM_001286669,NM_001286669,NM_001286669,NM_001286669,NM_001286669,NM_001286669,NM_001286670,NM_001286670,NM_001286670,NM_001286670,NM_001286670,NM_001286670,NM_001286670,NM_001286671,NM_001286671,NM_001286671,NM_001286671,NM_001286671,NM_001286671,NM_001286671,NM_181806,NM_181806,NM_181806,NM_181806,NM_181806,NM_181806,NM_181806 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_000962,NM_001271164,NM_001271165,NM_001271166,NM_001271367,NM_001271368,NM_080591,NM_000962,NM_001271164,NM_001271165,NM_001271166,NM_001271367,NM_001271368,NM_080591,NM_000962,NM_001271164,NM_001271165,NM_001271166,NM_001271367,NM_001271368,NM_080591,NM_000962,NM_001271164,NM_001271165,NM_001271166,NM_001271367,NM_001271368,NM_080591,NM_000962,NM_001271164,NM_001271165,NM_001271166,NM_001271367,NM_001271368,NM_080591 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 1297,1153,970,859,859,1111,1186,1297,1153,970,859,859,1111,1186,1297,1153,970,859,859,1111,1186,1297,1153,970,859,859,1111,1186,1297,1153,970,859,859,1111,1186 1800,1656,1473,1362,1362,1614,1689,1800,1656,1473,1362,1362,1614,1689,1800,1656,1473,1362,1362,1614,1689,1800,1656,1473,1362,1362,1614,1689,1800,1656,1473,1362,1362,1614,1689 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_000962,NM_001271164,NM_001271165,NM_001271166,NM_001271367,NM_001271368,NM_080591 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, MV4_11_RNAseq_1 HECTD3 chr1 45469952 - coding PSPN chr19 6378732 - intron > 4 0 138 78 0.000 0.000 154 1 0.040 0.000 139 128 91 29 CAACTGGTCCAGAAGGCACGGCTAGAGGAGAGCAAGGAGCAGGTGGCAGCTATGCAGGCAGGTCTGCTGAAGGTGGTACCACAGGCTGTGCTGGACTTGCTGACCTGGCAAGAGTTGGAGAAGAAAGTCTGTGGGAATCCGGGGTGGCCTACTTTGCAGGCAGTCCTTCCAGATGGTTCAGCCTTGGCTTTCGCTAGCTACCCAG CTX 154.00 LQ 0 CLoss NM_024602 2240 geneB_no_transcripts MV4_11_RNAseq_1 SUGT1 chr13 53226994 - 5utr RNF111 chr15 59373303 + coding > 4 0 141 80 0.000 0.000 152 1 0.140 0.000 142 130 68 15 GGGTCCTCGTCGATTAGGGCATCCGAGAAGCTCTGGAAAAACCTCTGGGATGTTGCAGTTCCTGCTGCAGCCGCCGCCATCCCTCGTAGTCGCTGTTGCTGCCGCCGGAGCTGCTACTATCACGGTTACCACCCCCACCACCAACTCACTTAGCCAGTACAGCTGCACCAATCCCTCAGCATCTTCCTCCTACACACCAGCCAATTTCAC CTX 152.00 LQ 2 NLoss 0,0,0,0,0,0,0,0,0,0,0,0 NM_001130912,NM_006704,NM_001130912,NM_006704,NM_001130912,NM_006704,NM_001130912,NM_006704,,,, ,,,,,,,,,,, 1,1,1,1,1,1,1,1,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001270528,NM_001270528,NM_001270529,NM_001270529,NM_001270530,NM_001270530,NM_017610,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610 706,706,705,705,706,706,706,706,706,705,706,706 8,8,8,8,8,8,8,8,,,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat 2117,2117,2114,2114,2117,2117,2117,2117,2117,2114,2117,2117 2988,2988,2958,2958,2985,2985,2961,2961,2988,2958,2985,2961 43,43,43,43,43,43,43,43,,,, ,,,,,,,,,,, VLVD*GIREALEKPLGCCSSCCSRRHPS*SLLLPPELLLSRLPPPPPTHLASTAAPIPQHLPPTHQPIS,VLVD*GIREALEKPLGCCSSCCSRRHPS*SLLLPPELLLSRLPPPPPTHLASTAAPIPQHLPPTHQPIS,VLVD*GIREALEKPLGCCSSCCSRRHPS*SLLLPPELLLSRLPPPPPTHLASTAAPIPQHLPPTHQPIS,VLVD*GIREALEKPLGCCSSCCSRRHPS*SLLLPPELLLSRLPPPPPTHLASTAAPIPQHLPPTHQPIS,VLVD*GIREALEKPLGCCSSCCSRRHPS*SLLLPPELLLSRLPPPPPTHLASTAAPIPQHLPPTHQPIS,VLVD*GIREALEKPLGCCSSCCSRRHPS*SLLLPPELLLSRLPPPPPTHLASTAAPIPQHLPPTHQPIS,VLVD*GIREALEKPLGCCSSCCSRRHPS*SLLLPPELLLSRLPPPPPTHLASTAAPIPQHLPPTHQPIS,VLVD*GIREALEKPLGCCSSCCSRRHPS*SLLLPPELLLSRLPPPPPTHLASTAAPIPQHLPPTHQPIS,,,, SUGT1:NM_001130912[1,1]-RNF111:NM_001270528[8,14];SUGT1:NM_006704[1,1]-RNF111:NM_001270528[8,14];SUGT1:NM_001130912[1,1]-RNF111:NM_001270529[8,14];SUGT1:NM_006704[1,1]-RNF111:NM_001270529[8,14];SUGT1:NM_001130912[1,1]-RNF111:NM_001270530[8,14];SUGT1:NM_006704[1,1]-RNF111:NM_001270530[8,14];SUGT1:NM_001130912[1,1]-RNF111:NM_017610[8,14];SUGT1:NM_006704[1,1]-RNF111:NM_017610[8,14];;;; geneB_transcripts=NM_001270528,NM_001270529,NM_001270530,NM_017610 ,,,,,,,,,,, 2,2,2,2,2,2,2,2,,,, MV4_11_RNAseq_1 PFN1 chr17 4848950 - 3utr SPN chr16 29681198 + 3utr > 8 0 324 138 0.000 0.000 152 0 0.840 0.070 325 325 25 435 CAAAGAAGGTGTCCACGGTGGTTTGATCAACAAGAAATGTTATGAAATGGCCTCCCACCTTCGGCGTTCCCAGTACTGACCTCGTCTGTCCCTTCCCCTTCACCGCTCCCCACAGCTTTGCACCCCTTTCCTCCCCATACACACACAAACCATTTTATTTTTTGGGCCATTACCCCATACCCCTTATTGCTGCCAAAACCACATGGGCTGGGGGCCAGGGCTGGATGGACAGACACCTCCCCCTACCCATATCCCTCCCGTGTGTGGTTGGAAAACTTTTGTTTTTTGGGGTTTTTTTTTTCTGAATAAAAAAGATTCTACTAAAAAAAAAAAAAAGGAGATAGAGCAAGGAACAGTAAGAAAATAGTTGGGTGCAGTGGCTATGCGGTGGCACTATAGGAGGCTGAGGCGGGCAGATCACCTGAGGTCAGGAGTTGGAGACCAGCCTGGGCAACATAGACCAGATCGGAAGAGCGTCG CTX 152.00 LQ 0 other , NM_005022,NM_005022 , , , , , , NM_001030288,NM_003123 , , , , 1203,1203 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001030288,NM_003123;geneb_utr_codons=13 , , MV4_11_RNAseq_1 CALR,MIR6515 chr19 13054904 - 3utr RAB31 chr18 9859587 + 3utr ? 1 4 140 147 0.000 0.000 8 296 0.270 0.230 145 135 1520 93 CTGCCCCCCAGGGGGGAGGGGAGAAAAGAGAAGAGAGAAGGGGACAGAGGCAAGAAAAGATGTTGATCAAGAAAGATGAGAACCAGGGGTGAGGGCTGAAGGAGAATCAAAGATAAAATACCAGTTTAAAAAAAAAAAAAAAAAAAAAAACCTTTAAAAATTGTTGGATGTGTACAAAAGTCTTACTGCCTTATTATGTGTATGGGATTCTAAAGTGGCATTCCACTTGGATTTCCTGTGCTACCTATCCAAATTCCAGTAACTACTTCAGTGTCATTGCCT CTX 152.00 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 CWF19L1 chr10 102020743 - coding MICU2 chr13 22202814 - intron > 0 6 135 147 0.000 0.890 0 150 0.000 0.100 139 150 182 144 GATCTGGAGATGTTGAAGGAAAGTTTGATATTTTATTCAATAGAGTTCAAGCAATTCAGAAGAAAAGTGGAAACTTTGATCTGCTGTTGTGTGTAGGAAATTTCTTTGGCTCCACCCAAGATGCTGAATGGGAGGAGTAAAATAAGCAAAAGCGTCCCAGGAGCCGTACTCTGACAGCTGTGCACGATGCCATCCTTGAGGACTTGGTCTTCCCAAGCGAAATTGTGGGCAAGAGAATCCGCGTCAAACTAGATGGCAGCCGGCTCATAAAGGTTCATTTGGACAAAGCACAGCAGAGATCG CTX 150.00 LQ 0 CLoss NM_018294 167 geneB_no_transcripts MV4_11_RNAseq_1 LYN chr8 56923080 - 3utr CLP1 chr11 57428880 + coding > 4 0 138 75 0.000 0.000 149 1 0.010 0.000 139 128 356 269 AAAATCATTGAAATCTGGGAAAGACATTTTTAAGCTGCTGACTTCACCTGCAAAATCTAACAGGTTGGATTAGTTTTTTTTTTTTTTTAAACAAGTAAGCCAAAGCACAAAGAAATGTCATGCTATGTGGATATCCGGTTCATGGATCTGAAGTAGAGATCAGCAGGAAGCCTTGCTGCCTGGGACATAGAGATCATCTGGC CTX 149.00 LQ 2 NLoss ,,, NM_001111097,NM_001111097,NM_002350,NM_002350 ,,, ,,, ,,, ,,, ,,, ,,, NM_001142597,NM_006831,NM_001142597,NM_006831 ,,, ,,, ,,, 1058,1250,1058,1250 1086,1278,1086,1278 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001142597,NM_006831 ,,, ,,, MV4_11_RNAseq_1 TMEM14B chr6 10757214 + 3utr KHDRBS1 chr1 32508884 + 3utr > 3 0 110 148 0.680 0.000 148 0 0.560 0.000 111 112 26 2534 CTCTTGAGAGATTTAGAATATCTTTTCTTTTGCTCATCTTAGACCACAGACTGACTTTGAAATTATGTTAAGTGAAATATCAATGAAAATAAAGTTTACTATAAATAATAAAAAAAAAAAAACAACAAAATTAGGCTTGTAAAACTGACTTTTTCATTACGTGGGTTTTGAAATCTAGCCCCAGACATACTGTGTTGAGAGATACTTAGAGGGAGGGAGTAGGTTTTGAAGAGGTTGATGGTGGTGGGGAGGGAAGGCC CTX 148.00 LQ 0 other ,,,,,,,,, NM_001127711,NM_001127711,NM_001286484,NM_001286484,NM_001286488,NM_001286488,NM_001286489,NM_001286489,NM_030969,NM_030969 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,293,293,191,191,, ,,,,,,,,, ,,,,,,,,, NM_001271878,NM_006559,NM_001271878,NM_006559,NM_001271878,NM_006559,NM_001271878,NM_006559,NM_001271878,NM_006559 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, 1215,1332,1215,1332,1215,1332,1215,1332,1215,1332 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001271878,NM_006559;geneb_utr_codons=13 ,,,,,,,,, ,,,,,,,,, MV4_11_RNAseq_1 NA chr5 165809373 - intergenic C14orf2 chr14 104381438 - coding > 4 0 105 239 0.680 0.000 145 0 0.120 0.000 116 123 264 7788 CGGGCACCAACACAACAGGCAGCTGGATCAGCCAAGAAGGCCTTGCCCGTTTCAGCACGTCGGAAGGTGTAATCCGTCTCCACAGACAAGGCCAGGACTCGTTTGTACCCGTTGATGATAGATGATGGGCTTCATCGTTTATAAAATCCGGGCTGCTGATAAAAGAAGTAAGGCTTTGAAAGCTTCAGCGCCTGCTCCTGGTCATCACTAACCAGATTTACTTGGAGTACATGTGAAAGAAAACGTCAGTCTGCCTGTAAATTTCAGCAAGCCGTGTTAGATGGGGAGCGTGGAACGTCACTGTACACTTGTATAAGTACCGTTTACTTCATGGCATGAATAAATGGATCTGTGAGATGCA CTX 145.00 LQ 0 NLoss 3,3 , , , , , , , NM_001127393,NM_004894 47,30 , blat,blat 140,89 228,177 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_001127393,NM_004894 , , MV4_11_RNAseq_1 CNN2 chr19 1038601 + 3utr ZNF33B chr10 43085881 - 3utr > 4 0 133 86 0.000 0.000 144 1 0.030 0.000 134 131 333 4 CTGCCCCGGGGCCAGGTGGAGAAAGTGAGGGCCGTACAAGGAAGTGAAATTCTGAGTTGTTGGGGCTAAGCCTGACCCCCTCTCCATGCTCCCCGCCCCAACCCACTCTGGCCTCAGTAGATTTTTTTTTCAGCCTGGGCAACATAGCGAGACTCCATCTCAATAAAATTAATAATAATAAAACCTTCCAAAAAAAGTGCCGGGACCAAATGGATTCACT CTX 144.00 LQ 0 other , NM_004368,NM_201277 , , , , , , NM_006955,NM_006955 , , , , 2337,2337 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_006955;geneb_utr_codons=13 , , MV4_11_RNAseq_1 SLC25A25-AS1 chr9 130873918 + 3utr NFX1 chr9 33294901 + coding > 2 1 164 137 0.010 0.030 140 7 0.180 0.010 165 165 15 143 CAGGTGTGGTGGTGGGCACCTGTAGTCGCAGCTACTCGAGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGAAGGTTGCAGTGAGCTGAGATTGTGCCACACTGCACTCCAGCCTGGGCTACAGAGCGAGACTATGTCTCAAAAAAAGAAAAAAAAAAAAGCAACACAGTTTGTATACAGCTATGGTAGAGGACCAAAAGTCAAGGGGAAACTCAAATGTGAATGGAGTAACCGAACAACTCCAAAACCGGAGGATGCTGGACCCGAAAGTACCAAACCTGTGGGGGTTTTCCAC INS 142.73 LQ 0 NLoss 3,3,3 ,, ,, ,, ,, ,, ,, ,, NM_002504,NM_147133,NM_147134 170,170,170 ,, tuple,tuple,tuple 509,509,509 3363,3075,2502 ,, ,, ,, ;; geneA_no_transcript_IDs_found geneB_transcripts=NM_002504,NM_147133,NM_147134 ,, ,, MV4_11_RNAseq_1 GGA2 chr16 23478709 - 3utr SRSF11 chr1 70716959 + 3utr > 11 0 426 145 0.020 0.000 138 0 0.150 0.000 462 478 300 1743 CTCCGTAATCTCATATTTCTCTTTTTCTGTGCCAAAGTCAATGAGAGTGAAGCTGCAGCCGGCATCCAGCTCCAAGCTTCCTGCATTCAGTCCTTTGATGCCTCCAGCTGTGATATCTCAGATGCTGCTGCTTGACAATCCACACAAAGAACCTATCCGCTTACGGTACAAGCTGACATTCAACCAAGGTGGACAGCCTTTCAGCGAAGTAGGAGAAGTGAAAGACTTCCCAGACCTGGCTGTCTTGGGCGCAGCCTAACTTTTCACAAGATGGACCCTTCATTTCAAGCTTAGGCTGGCGTTACTTTTGCTGTCTAGTCAGGACTAATCACGGTGTTTCAGTGCGGAGTGCCAAGAGTCCTATCCTGACGTCAGGCTCTGGGTGTCAACCTCTGACTTATTCTGCAGATGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGGGGAGGTTTGTTGACATGACAAATTAACATTCTTATAGTTACATCTGGAAATGAGCATTTGAAATAGATAATCCTTTAAGCTTTGTGGCAAAATTTTTGTGGCTTTTGTTTAACTTTGAAAGGTTATTATGCACTAACCTTTTTTGGTGGCCAGA CTX 138.00 LQ 2 other , NM_015044,NM_015044 , , , , , , NM_001190987,NM_004768 , , , , 1452,1455 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001190987,NM_004768;geneb_utr_codons=13 , , MV4_11_RNAseq_1 WDR61 chr15 78575577 - 3utr AMN1 chr12 31883539 + intron > 4 0 151 124 0.000 0.000 133 0 0.140 0.000 155 152 60 21 TCTATCATGACATTCCTTACCTTCTTAGGCTTGTTTAAAAGAAATATAGCATTTATTGTAGCAAAGACTTAAATTTTGTAGATACAATATGAATCTTTTCATGTTTTATTGGAAATGCTGTTCATACTTTAACATAAAGCTTTCTTAATGCAAAAAAAAAAAAAAGAAAGAAAGAACTGCCTCAAGGACTTTAAAAAATAAACCAAAAAACCCACAATTTCTTCACATCTTTCATGCATTTAATGTTTTGCACAACTTGCTTGTTTTGCAAATATG CTX 133.00 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 COX7C chr5 85913775 - 5utr ATP6AP1 chrX 153664093 + coding > 3 0 139 100 0.000 0.000 131 1 1.000 0.000 140 146 764 423 GTGGCTCCTACGGACTACTGATGTTGTGATCCTCCGTATTCTCTGGTCCATCATACCGCTGCTGGATGTTCTGAGAAAGGCAAAGAGAATGAGGACAGATGAAATGGCGGCACCTCACCAAGACCTTTTTTTTCACGACCTTGTTCCCCGGTATCTGGATGGGGCTGCTCACCTCCCTGTTCATGCTCTTCATCTTCACCTATGGCCTGCACATGATCCTCAGCCTCAAGACCATGGATCGCTTTG CTX 131.00 LQ 0 NLoss 3 NM_001183 423 blat 1269 1413 geneA_no_transcript_IDs_found geneB_transcripts=NM_001183 MV4_11_RNAseq_1 GSPT1 chr16 12009436 + coding KLHDC3 chr6 42986371 + coding ? 0 6 91 85 0.000 0.150 0 261 0.000 0.020 91 102 256 917 GCACGAAGGGCTTGGCGTTGACGTTGAGTTGCCGGCTGAAGGCCGCGCTGAGGTTCTCCCGCTGGGCCTCGGCCGCCGCCGCCAGGGAGCCACTCGGCCTTTGGCTACAATGGGGAGCTGTACATCTTTGGTGGTTATAATGCAAGGCTGAACCGGCACTTCCCTGACCTCTGGAAGTTTCATCCTGTGTCCTTCACCTGGTAGAGGATTGAAGCGAAGGGGTAGGGGTCTTGTTGCCACCG CTX 130.50 LQ 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 ENGASE chr17 77081424 + coding SMEK1 chr14 91928522 - coding > 3 0 137 129 0.000 0.000 130 0 0.100 0.000 138 150 34 631 CGGCAGCTGCCACATCGGTGGCATCTCAGTGTTGAACGCAGCAACCAGCTCCAGACACAGCCTCCGCCCCCTCCGGGTGCCCCCCACCAAGCTGGCCAGATGGGTGGGCCGCTGCGGCCGGCAGCTGAGTGGGGGCTGGGTCCAGCACTGAAGAGATGTGGTTTAACACAGATGAAGATGACATGGAAGATGGAGAAGCTGTAGTGTCTCCATCTGACAAAACTAAAAATGATGATGATATTATGGATCCAATAAGTAAATTCATGGAAAGGAATAAATTAAAAGAAA CTX 130.00 LQ 0 Fusion 0,0,3,3 NM_001042573,NM_001042573,, ,,, 12,12,, ,,, 1700,1700,, ,,, ,,, NM_001284280,NM_001284281,NM_001284280,NM_001284281 666,440,666,440 13,11,, tuple,tuple,tuple,tuple 1996,1318,1996,1318 2463,1785,2463,1785 49,49,, ,,, AAATSVASQC*TQQPAPDTASAPSGCPPPSWPDGWAAAAGS*VGAGSSTEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERNKLKE,AAATSVASQC*TQQPAPDTASAPSGCPPPSWPDGWAAAAGS*VGAGSSTEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERNKLKE,, ENGASE:NM_001042573[1,12]-SMEK1:NM_001284280[13,15];ENGASE:NM_001042573[1,12]-SMEK1:NM_001284281[11,13];; geneB_transcripts=NM_001284280,NM_001284281 ,,, 2,2,, MV4_11_RNAseq_1 UBL5 chr19 9940769 + 3utr LAMP2 chrX 119642423 + intron > 9 0 114 98 0.520 0.000 127 1 0.760 0.000 144 151 10636 0 TCCACGTGTCCCTCTGGGACTATGAACCACACGATGCGATGAACCTGGAGATTCATTATCAATAGATGAGAATCCTCTTCTTCCTGCCCCTCTTTCCTCTCCCATCCTCATCCCCCACACTGGGATAGATGCTTGTTTGTAACAACTCACCCCCTTTTGAATAAAACAAAGATCTTAATACATTTTAACTCCAAACTTTTACCTTCCATCTTCCATGTTAGCTTGTCTAGTATTTTAGTGCTACTCTT CTX 127.00 LQ 0 other , NM_001048241,NM_024292 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 ACTG1 chr17 79477000 - 3utr LINC00662 chr19 28297942 + intron > 3 0 129 142 0.920 0.000 126 0 0.280 0.000 158 159 30 78 TTCCCTACACGACGCTCTTCCGATCTGTTTTTTTTTGTACGCAATTCTCGATTCTTTGAAGAGATGACAACAAATTTTGGTTTTCTACTGTTATGTGAGAACATTAGGCCCCAGCAACACGTCATTGTGTAAGGAAAAATAAAAGTGCTGCCGTAACACAAAAAAAAAAAAAACATAGTTAGTAGAAGAAAAAAATCATAGGATTATAGGATTAGAGCAGAAAAAAATAAAATAAAACAAAAACTACAAAAGATTAATGAAAATATTTGGCCTTTTAGAAAAGTTAAAAATTGGCAAACCTTCAG CTX 126.00 LQ 0 other , NM_001199954,NM_001614 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 SLC52A2 chr8 145584697 - 3utr RAB43,ISY1-RAB43,ISY1 chr3 128853797 - coding > 0 3 146 354 0.000 0.000 0 125 0.000 0.010 156 172 497 433 CTTCCGATCTCTGCTCCTTGCCCTTGCCCACCCTGGAAAGCCAGGATCTCCTATGGAGTGTGTAGGTGTCCACGAGTGTACCGGTGTGCGGGCCTCCTGGGCTGCAGGCACTCAGGCATGGTGGCAGCATTGAGGGAAAGACAGGTGTTGGGGAGCTGTTTGAAAAAGAACCTCTTCCTCCTCCCAGAAAGACACGTGCTGAGCTCATGAAGGCAATCGATTTTGAGTACTATGGTTACCTAGATGAAGATGATGGTGTTATTGTGCCTTTGGAACAGGAATATGAAAAGAAACTCAGAGCCGAGTTAGTGGAAAAGTGGAAAGCAGAGAGAGAGGCTCGGCTGGCAAGAGGAGAAAAGGAAGAGGAGGAGGAAGAGGAGGAAGAGATCAACATCTATGCAGCCACCGAGGAGGAGTCGGACGAGGAAGGCAGCCAGGAGAAAGGAGGGGACGACAGCCAGCAGAAGTTCATTGCTCACGTCCCTGTTCCCTCGCAGCAAGAGATTGAGGAGGCACTGGTGCGAAG CTX 125.00 LQ 0 NLoss 0,0,0,0,0,0,0,0,0,3,3,3 NM_001253815,NM_001253816,NM_024531,NM_001253815,NM_001253816,NM_024531,NM_001253815,NM_001253816,NM_024531,,, ,,,,,,,,,,, 5,5,5,5,5,5,5,5,5,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001199469,NM_001199469,NM_001199469,NM_001204890,NM_001204890,NM_001204890,NM_020701,NM_020701,NM_020701,NM_001199469,NM_001204890,NM_020701 162,162,162,140,140,140,140,140,140,162,140,140 9,9,9,8,8,8,8,8,8,,, blat,blat,blat,tuple,tuple,tuple,tuple,tuple,tuple,blat,tuple,tuple 485,485,485,419,419,419,419,419,419,485,419,419 924,924,924,996,996,996,858,858,858,924,996,858 57,57,57,56,56,56,56,56,56,,, ,,,,,,,,,,, SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,,, SLC52A2:NM_001253815[1,5]-ISY1:NM_001199469[9,12];SLC52A2:NM_001253816[1,5]-ISY1:NM_001199469[9,12];SLC52A2:NM_024531[1,5]-ISY1:NM_001199469[9,12];SLC52A2:NM_001253815[1,5]-ISY1-RAB43:NM_001204890[8,13];SLC52A2:NM_001253816[1,5]-ISY1-RAB43:NM_001204890[8,13];SLC52A2:NM_024531[1,5]-ISY1-RAB43:NM_001204890[8,13];SLC52A2:NM_001253815[1,5]-ISY1:NM_020701[8,11];SLC52A2:NM_001253816[1,5]-ISY1:NM_020701[8,11];SLC52A2:NM_024531[1,5]-ISY1:NM_020701[8,11];;; geneB_transcripts=NM_001199469,NM_001204890,NM_020701 ,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,,, MV4_11_RNAseq_1 TUBB4B chr9 140138034 + 3utr NA chr3 40803013 + intergenic > 0 3 151 282 0.000 0.890 0 124 0.000 1.000 155 159 4588 22 ATCTAGATGGAGTTCACCGAGGCCGAGAGCAACATGAATGACCTGGTGTCCGAGTACCAGCAGTACCAGGATGCCACAGCCGAGGAGGAGGGCGAGTTCGAGGAGGAGGCTGAGGAGGAGGTGGCCTAGAGCCTTCAGTCACTGGGGAAAGCAGGAATGACGACCTACGCACACGAGAACATGCCTCTCGCAAAGGATCTCCTTCATCCCTCTCCAGAAGAGGAGAAGAGGAAACACAAGAAGAAACGCCTGGTGCAGAGCCCCAATTCCTACTTCATGGATGTGAAATGCCCAGGATGCTATAAAATCACCACGGTCTTTAGCCATGCACAAACGGTAGTTTTGTGTGTTGGCTGCTCCACTGTCCTCTGCCAGCCTACAGGAGGAAAAGCAAGGCTTACAGAAGGATGTTCCTTCAGGAGGAAGCAGCACTAAAAGCAC CTX 124.00 LQ 0 other NM_006088 geneB_no_transcripts MV4_11_RNAseq_1 POLA1 chrX 24806451 - intron FOXP2 chr7 114331994 + 5utr > 6 0 140 135 0.830 0.000 124 0 0.120 0.000 142 130 136 173 TGGAACAGATATGCTGGAGGAGCAGATCACTGCTTTTGAGGACTATGTGCAGTCCATGGATGTGGCTGCTTTCAACAAGATCTAAAATCCATCCTGGATCATGGCATTTAAATAAAAGATTGAAAGATTAAAAAAAAAAAAAAAAAGAAAAACATTAGAACAATTATGGCAGATTGCATGAAACGTGAGAACGTCACAGTAACTGCTACTTTTCATTATGTTTGTCTTTGGGTCATGATCAACGAACCGGAAGTTTACAATATG CTX 124.00 LQ 0 other ,,, NM_016937,NM_016937,NM_016937,NM_016937 ,,, ,,, ,,, ,,, ,,, ,,, NM_001172766,NM_014491,NM_148898,NM_148900 ,,, ,,, ,,, ,,, 2145,2148,2223,2199 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001172766,NM_014491,NM_148898,NM_148900;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 CCT5 chr5 10264916 + 3utr RAB11FIP3 chr16 572222 + 3utr > 1 2 361 189 0.000 0.000 9 124 0.000 0.150 361 351 4544 42 GCCCTGGCAGTTAGCCAAGAGGCGGATAAGTGCCCCACCTTAGAACAGTATGCCATGAGAGCGTTTGCCGACGCACTGGAGGTCATCCCCATGGCCCTCTCTGAAAACAGTGGCATGAATCCCATCCAGACTATGACCGAAGTCCGAGCCAGACAGGTGAAGGAGATGAACCCTGCTCTTGGCATCGACTGTTTGCACAAGGGGACAAATGATATGAAGCAACAGCATGTCATAGAAACCTTGATTGGCAAAAAGCAACAGATATCTCTTGCAACACAAATGGTTAGAATGATTTTGAAGATTGATGACATTCGTAAGCCTGGAGAATCTGAAGAATGAAGACATTGAGAAAACTATGTAGAAACATGAAATATATATATATATATATATATATATATATGTATAATATATAAAGACTGGCACCCTGCCTCTCTGTGCCCAGGCCCAGCCCTGGTGACATGGCACCACTCAGCAGTGCTGTCACTGTAAGCATGGACTCCCAGGAGACAGTGTGGGAAACGCTCCTGCTTTAATTCCCCG CTX 124.00 LQ 0 other , NM_012073,NM_012073 , , , , , , NM_001142272,NM_014700 , , , , 1383,2271 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001142272,NM_014700;geneb_utr_codons=13 , , MV4_11_RNAseq_1 THRIL chr12 125514178 - intron RNF135 chr17 29361523 - intergenic > 0 6 122 118 0.000 0.920 0 124 0.000 0.030 134 144 152 1462 TGCACCTTTCGACGCCATTCACTTACCATTTCTGAATTAAGAGACAGGTACGATTCACAAGGTCTGCTTCCCAGAAATTCGATTCCTGTGCTCTGTTACCAGAAATGATAGGGCGGCTGAAATCCAAAGCAAAAACAAGTTGTGGGACTGCATGCTACTGTATAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTTTCAGCCGATCACCTCTGAGACCCACCTTGCTCGTAAACAACAAGCCCATGTTGGTCCTCAGACCACGACATGTGACCCTA CTX 124.00 LQ 0 other 0 NM_001184992 geneB_no_transcripts MV4_11_RNAseq_1 ARHGDIB chr12 15094970 - 3utr FAM45B chrX 129630733 + 5utr > 7 3 388 111 0.000 0.500 114 119 0.000 0.020 389 399 1500 665 TACTGCCACATTTCCTTATTGATGCATCTTTTCCCACCCTGTCACTCAACGTGGTCCCTAGAACAAGAGGCTTAAAACCGGGCTTTCACCCAACCTGCTCCCTCTGATCCTCCATCAGGGCCAGATCTTCCACGTCTCCATCTCAGTACACAATCATTTAATATTTCCCTGTCTTACCCCTATTCAAGCAACTAGAGGCCAGAAAATGGGCAAATTATCACTAACAGGTCTTTGACTCAGGTTCCAGTAGTTCATTCTAATGCCTAGATTCTTTTGTGGTTGTTGCTGGCCCAATGAGTCCCTAGTCACATCCCCTGCCAGAGGGAGTTCTTCTTTTGTGAGAGACACTGTAAACGACACAAGAGAACAAGAATAAAACAATAACTGTGAAAAAAAAAAAAAAAAAAAAAAAGGTTTTTCCCGCCCTTTGAACATTTTGCCTATGAAATTTTTTCATATATTTTATACTTTAGTGAACAACTTTAATAATCCATATTTATACTATCGCAG CTX 119.00 LQ 0 other NM_001175 geneB_no_transcripts MV4_11_RNAseq_1 LOC643339 chr12 93477051 - intron LBR chr1 225590942 - 3utr > 5 0 423 81 0.800 0.000 119 1 1.000 0.000 424 428 9 402 GCCATTTTTTTGGAAACCTCTGCGCCATGAGAGCCAAGTGGAGGAAGAAGCGAATGCGCAGGCTGAAGCGCAAAAGAAGAAAGATGAGGCAGAGGTCCAAGTAAACCGCTAGCTTGTTGCACCGTGGAGGCCACAGGAGCAGAAACATGGAATGCCAGACGCTGGGGATGCTGGTACAAGTTGTGGGACTGCATGCTACTGTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCCGATCACCTCTGAGACCCACCTTGCTCATAAACAAAATGCCCATGTTGGTCCTCTGCCCTGGACCTGTGACATTCTGGACTATTTCTGTGTTTATTTGTGGCCGAGTGTAACAACCATATAATAAATCACCTCTTCCGCTGTTTTAGCTGAAGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCGAAACTTTCTTTTGTTGCACTGACAGGGTCTGTACTTTTTTTTTTCTTTTTGAGTCAGGACTATGGAGCCG CTX 119.00 LQ 0 other , , , , , , , , NM_002296,NM_194442 , , , , 1848,1848 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_002296,NM_194442;geneb_utr_codons=13 , , MV4_11_RNAseq_1 ZZZ3 chr1 78036187 + intron BAG4 chr8 38066754 + coding > 3 0 181 199 0.000 0.000 118 0 0.060 0.000 182 174 80 80 CTCGATCTCCTGACCTCGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATACCACACCTGGCCTATCCTCAGTTATTCACTCTGTCTTATATCGAATGTAACAAATCCTGTCATTTCTTAATACTTTCTACAATCGCTTTCAAATCGGTCCTCTAGTATCCACCCCCTTCACCCCCAGTCCAGCAGCCCAAGGATTCTTCATACCCCTATAGCCAATCAGATCAAAGCATGAACCGGCACAACTTTCCTTGCAGTGTCCATCAGTACGAATCCTCGGGGACAGTGAACAATGATGATTCAGATCTTTTGGATTCCCAAGTCCAGTATAGTGCTGAGCCTCAGCTGTATGGTAATGCCAC CTX 118.00 LQ 2 NLoss 0,0,3,3 NM_015534,NM_015534,, ,,, 12,12,, ,,, ,,, ,,, ,,, NM_001204878,NM_004874,NM_001204878,NM_004874 250,286,250,286 3,4,, blat,blat,blat,blat 749,857,749,857 1266,1374,1266,1374 58,58,, ,,, SIS*PRDLPASASQSAGITGIPHLAYPQLFTLSYIECNKSCHFLILSTIAFKSVL*YPPPSPPVQQPKDSSYPYSQSDQSMNRHNFPCSVHQYESSGTVNNDDSDLLDSQVQYSAEPQLYGNA,SIS*PRDLPASASQSAGITGIPHLAYPQLFTLSYIECNKSCHFLILSTIAFKSVL*YPPPSPPVQQPKDSSYPYSQSDQSMNRHNFPCSVHQYESSGTVNNDDSDLLDSQVQYSAEPQLYGNA,, ZZZ3:NM_015534[1,12]-BAG4:NM_001204878[3,4];ZZZ3:NM_015534[1,12]-BAG4:NM_004874[4,5];; geneB_transcripts=NM_001204878,NM_004874 ,,, 1,1,, MV4_11_RNAseq_1 AIMP2 chr7 6063461 + 3utr NFATC3 chr16 68260803 + 3utr > 0 3 143 142 0.000 0.010 0 116 0.000 0.120 143 146 148 166 GTGAATTGCCGTAACTGATTTTAAAGGGTTTAGATTTTAAGAATGGTGCTCTTTCATGCCTATTATCAGTAAGGGGACTTGTATTAGAGTCAGAGTCTTTTTATTTAGGCCAGTTGTCAAGTGTCAATAAAAGCATCATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAAAGAAAAAGAAAAAAATATCCCAAGCCCACACCTATGCCTCAGAAAGTCAGCATGTGTCCTGAAGACGTTCATAGATTTATAGGAAATAAAGCCAAAT CTX 116.00 LQ 0 other ,,,,,,,, NM_001134335,NM_001134335,NM_001134335,NM_006303,NM_006303,NM_006303,NM_014413,NM_014413,NM_014413 ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, NM_004555,NM_173163,NM_173165,NM_004555,NM_173163,NM_173165,NM_004555,NM_173163,NM_173165 ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, 3207,3198,3228,3207,3198,3228,3207,3198,3228 ,,,,,,,, ,,,,,,,, ,,,,,,,, ;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_004555,NM_173163,NM_173165;geneb_utr_codons=13 ,,,,,,,, ,,,,,,,, MV4_11_RNAseq_1 UTP18 chr17 49365490 + coding STRAP chr12 16055927 + 3utr > 0 13 212 165 0.000 0.510 0 115 0.000 0.060 212 221 1761 1520 TTATGTTTGGGATGTGAACTCAAGGAAGTGCCTTAACAGATTTGTTGATGAAGGCAGTTTATATGGATTAAGCATTGCCACATCTAGGAATGGACAGTATGTTGCTTGTGGTTCTAATTGTGGAGTGGTAAATATATACAATCAAGATTCTTGTCTCCAAGAAACAAACCCAAAGCCAATAAAAGCTATAATGAACTTGGTTACAGGTGTTAATCATATGTTGCAGTTAGTATACAACTGACTAAAACAAGCAAGCAGAGAAAAGCATCAGCCTTCCAGAGTTACTGTCTGCTTAAGGCAGAAACAGCAGTAAATAATGAGGAAAATGAATTAGCTCCAGTGCTGGAACAACTAACTAACTTGGTGTTACCTGTAAGTGAAAACTC CTX 115.00 LQ 0 CLoss NM_016001 1429 NM_007178 1053 geneB_no_inframe_contig_found geneB_transcripts=NM_007178;geneb_utr_codons=13 MV4_11_RNAseq_1 JTB chr1 153946888 + 3utr STAT6 chr12 57505100 - 5utr ? 0 21 94 216 0.000 0.090 1 224 0.000 1.000 95 101 148 63 GGGGAAATAAGTTTTGAGTGAGAAATAAACGTTTTAGCTGAAATTGTATCCCAGAAGTTTGAAATAAGTAGTAGAAGAGGGGAAAACACGGGAGAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTGCTTTATCTTATTTTTCTTTTTGGTGGTGGTGGTGGAAGGGGGGAGGTGCTAGCAGGGCCAGCCTTGAACTCGCTGGACAGAGCTACAGACCTATGGGGCCTGGAAGTGCCCGCTGAGAAAGGGAGAAGACAGCAGAGGGGTTGCCGAGAGAAAGGCCTATTGGAGGAACCTGAGCAGGAG CTX 112.00 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 NA chr7 41911606 - intergenic INHBA chr7 41775302 - intron > 1 12 144 38 0.000 0.000 6 1117 0.010 0.130 144 144 84 190 CACACCTCAAATGGGTCACTAAATGTTTACCAGCACATCACCACTTGGGTGGCTCTTCTGCACATCTCTCCCTGAGGTGAGGACTCAGGGATCATGGCTCATTCCATCACATGGCTCTGCCCTCTCAGGGTCCTTCACTGTGAGTTCACACTTCAGATCCTTAGCACCGTGGATCAGACCT DEL 111.70 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr7 41911606 - intergenic INHBA chr7 41775312 - intron > 1 12 144 38 0.000 0.000 6 1117 0.010 0.130 144 144 84 184 CACACCTCAAATGGGTCACTAAATGTTTACCAGCACATCACCACTTGGGTGGCTCTTCTGCACATCTCTCCCTGAGGTGAGGACTCAGGGATCATGGCTCATTCCATCACATGGCTCTGCCCTCTCAGGGTCCTTCACTGTGAGTTCACACTTCAGATCCTTAGCACCGTGGATCAGACCT DEL 111.70 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 ESD chr13 47358421 + coding CHMP5 chr9 33271149 + coding ? 0 7 90 140 0.000 0.670 1 219 0.000 0.010 90 92 1101 1046 CCAGCACCAGTGCCAAAGTCCCAGCTCTCATCTTCACCTTTAATATTGCAGCCACGAGGGCTGGTATCTGGAGCAATGACAACAAGACCACGGTTGATGCTATGAAACTGGGAGTAAAGGAAATGAAGAAGGCATACAAGCAAGTGAAGATCGACCAGATTGAGGATTTACAAGACCAGCTAGAGGATATGATGGAAGATGCAAATGAAATCCAAGAAGCACTGAGTCACAG CTX 109.50 LQ 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 ICE1 chr5 5462663 + coding PPP2R5D chr6 42924414 - intron > 0 3 82 137 0.000 0.750 1 109 0.000 0.030 82 91 43 189 TAATGGACTTTGGAAATTGAAATCTACAACTCCCGGTGGTGCTTTGCCTGAGTGTTTTGGCACCACAGACACTACTTTTTCTGGGAGGCGCTACGCCAGGACCGACGGGAAGGTTTTCCAGTTTCTTAATGCGAAATGCGAGTCGGCTTTCCTTTCCAAGAGGAATCCTCGGCAGATAAACTGGACTGTCCTCTACAGAAGGAAGCACAANANGGNACAGTCGGAANAN CTX 109.00 LQ 0 CLoss NM_015325 3216 geneB_no_transcripts MV4_11_RNAseq_1 NA chr6 113408138 - intergenic FAM45A,FAM45B chr10 120896679 + 3utr > 0 8 83 140 0.510 0.500 1 220 0.010 0.010 88 93 0 1356 ATATTGAAAAGCACAGAGGATTTCTTTAGTGTCATTGCCGATTTTGGCTATAACAGTGTCTTTCTAGCCATAATAAAATAAAACAAAAAGTTAAAAAAAAAAAAAAAAAAAAAGGTTTTTCCCGGCCTTTGAACAATTTGCCTATGAGAGGTTTTGATATATTTTTTACTTGAGTAGACAAATTTTATAATCCATTTTTAAACTATCGCAGAAGTAAACATTTGGCAAACGTTT CTX 108.30 LQ 0 other NM_207009 1074 geneB_no_inframe_contig_found geneB_transcripts=NM_207009;geneb_utr_codons=13 MV4_11_RNAseq_1 C12orf79,BTG1 chr12 92537707 - 3utr LRPPRC chr2 44114898 + 3utr ? 4 0 265 145 0.040 0.000 212 0 0.010 0.000 266 280 244 422 CTCAAAACAGCACCAACGTGCAAATGGTAGACAGCCGAATCAGCTGTAAGGAGGAACTTCTCTTGGGCAGAACGAGCCCTTCCAAAAACTACAATATGATGACTGTATCAGGTTAAGATATAGTCTGTGGATGGATCATCTGATGATGATGGATAAATTTGATTTTTGCTTTGGGTGGGCTCCTCTTGGGGATGGATTATGGAATTTAAACCATGTCACAGCTGTGAAGATCTGGCACAAGATAGAATGGTAAAAAAAAAAAAAAATTTTAAGTGACACCTTTTATTTCAAACAATTAAATACAAACCAATATTTTACCCCTTCATAGATGAAATCACATCTTTTCAGGATATGAGTATAAAGTAACAAGCCTAGGGCAGAGCTTGTACTGACAAAGTCCTGAAACTACAATGAGAGGAAACAC CTX 106.00 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 LRCH4,ZASP chr7 100178173 - intron CREB3L2 chr7 137560502 - 3utr > 4 0 131 74 0.000 0.000 172 0 0.020 0.000 132 127 397 139 GTCGTGTGTGTCTGTGCATGTGTATGTGTGTTTGTGTCTGTGTGTGTCTTTGTGTGTGTGTTTGTGTTTATGTCTGTTGTGTGTGTTTAGGTCTGTGTTGTGTGTGTTGTATGTGTTGTGTGTGTTAGGGTGACTCTTTACCACAGGATGAATAAAGAACTAAGTAATATGGGAATGCAGCAATTTCTGGACTAGCTGAG INS 104.32 LQ 2 other , NM_001289934,NM_002319 , , , 598,598 , , NM_194071,NM_194071 , , , , 1563,1563 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_194071;geneb_utr_codons=13 , , MV4_11_RNAseq_1 HERPUD1 chr16 56977304 - 3utr NUP50 chr22 45583048 + 3utr ? 0 8 84 141 0.000 0.490 1 208 0.000 0.080 84 86 391 371 TTTTTGTTCACCAATTTGTATCACGGCTTCACGTTTCTGCTTTTGCTTGCTCACAAAAGCATATCATCATCCACACTGTTTTTTTTTTTTTTTTTTTTAAACCTGTGTATCCATCTCATCCTTTTGCGCATTCCTAGTAAGCAAAAAAATTTGTTATGCCATTTTCATTATTTTATTTACAGACTGAAAAAATATGGCCAGTTTTTAAATAAGTTTAGATTATGTTT CTX 104.00 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 LOC101928030 chr12 9558904 - intron KLRB1 chr12 9720140 + intergenic > 5 0 144 130 0.930 0.660 304 1 0.440 0.010 145 145 74 0 CTCCGGTACATTGCAAATGACCTGCTTTTTTTCTGATCCCGAGCTGCGTTCAGACCCCTGTCGGATAGTAAATCCCAAGTAAGGTACCTTCTGCTGGAAGATCTGAGCTTTCTTCTTGGACACCTAAAACCCACAGTCCTCCAGACCCCTGTCGGATAGTAAATCCCAAGTAAGGCACCTGCCGTCGGCAGATCTGAGCTTTCTTCTTGGACACCTAAAACCCACAGTCCTCCAGTGAAGGATCCAGTGAGATTTTCCAGGTTAACGGTCATAACCGC ITX 103.43 LQ 0 other 0 NM_002258 geneB_no_transcripts MV4_11_RNAseq_1 RAB3GAP2 chr1 220428041 - intron LSM7 chr19 2328465 - coding > 4 3 183 150 0.670 0.000 61 119 0.220 0.060 184 175 51 3842 TTTTGTCATATAGCATTAACATGTATTATAAAAGTGCGTAGTGTCAAAGGAATAGAACCACCAGCATTCAAAAGCAGCTTTGTCAACTAGGCAATAAAACACTCTACAGCATATCCCTCTGTTGTCCATCATTGAAAACACTGGCAGCAATTTTGAAATGAAAAAAAAAAAAGAAAGAAGGAAAAAGGAGAGCATCTTGGACTTGTCCAAGTACATCGACAAGACGATCCGGGTAAAGTTCCAGGGAGGCCGCGAAGTGGAATCCTGAAGGGCTTCGACCCACTCCTCAACCTTGTGCTGGACGGCACCATTGAGTACATGCGAGACCCTGAC CTX 100.27 LQ 0 NLoss 0,3 NM_012414, , 1, , 115, , , NM_016199,NM_016199 6,6 2, blat,blat 18,18 312,312 60, , FVI*H*HVL*KCVVSKE*NHQHSKAALSTRQ*NTLQHIPLLSIIENTGSNFEMKKKKERRKKESILDLSKYIDKTIRVKFQGGREVES*RASTHSSTLCWTAPLSTCETL, RAB3GAP2:NM_012414[1,1]-LSM7:NM_016199[2,4]; geneB_blat_issues=too_many_mismatches geneB_transcripts=NM_016199 , 1, MV4_11_RNAseq_1 HSP90AB1 chr6 44218152 + coding BAZ1A chr14 35240813 - coding > 0 4 233 134 0.490 0.000 0 196 0.000 0.020 234 234 6311 269 GTGATCCTCCATCTTAAAGAAGATCAGACAGAGTACCTAGAAGAGAGGCGGGTCAAAGAAGTAGTGAAGAAGCATTCTCAGTTCATAGGCTATCCCATCACCCTTTATTTGGAGAAGGAACGAGAGAAGGAAATTAGTGATGATGAGGCAGAGGAAGAGAAAGGTGAGAAAGAAGAGGAAGATAAAGATGATGAAGAAAAGCCCAAGATCGAAGATGTGGGTTCAGATGAGGAGACCACAATCAGTGAGCAGTGTGGTTCATTATCTGGCAATGGCACTCTTTCAAATAGAGCAGGGCATTGAGCGGCGTTTTCTGAAAGCTCCACTTGATGCCAGTGACAGTGGGCGTTCTTATAAAACAGTTCTGG CTX 99.96 LQ 1 Fusion 0,0,0,0,0,0,0,0,0,0,3,3 NM_001271969,NM_001271970,NM_001271971,NM_001271972,NM_007355,NM_001271969,NM_001271970,NM_001271971,NM_001271972,NM_007355,, ,,,,,,,,,,, 6,6,6,6,6,6,6,6,6,6,, ,,,,,,,,,,, 773,773,629,743,773,773,773,629,743,773,, ,,,,,,,,,,, ,,,,,,,,,,, NM_013448,NM_013448,NM_013448,NM_013448,NM_013448,NM_182648,NM_182648,NM_182648,NM_182648,NM_182648,NM_013448,NM_182648 1069,1069,1069,1069,1069,1037,1037,1037,1037,1037,1069,1037 21,21,21,21,21,20,20,20,20,20,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat 3205,3205,3205,3205,3205,3109,3109,3109,3109,3109,3205,3109 4671,4671,4671,4671,4671,4575,4575,4575,4575,4575,4671,4575 78,78,78,78,78,78,78,78,78,78,, ,,,,,,,,,,, *SSILKKIRQST*KRGGSKK**RSILSS*AIPSPFIWRRNERRKLVMMRQRKRKVRKKRKIKMMKKSPRSKMWVQMRRPQSVSSVVHYLAMALFQIEQGIERRFLKAPLDASDSGRSYKTVL,*SSILKKIRQST*KRGGSKK**RSILSS*AIPSPFIWRRNERRKLVMMRQRKRKVRKKRKIKMMKKSPRSKMWVQMRRPQSVSSVVHYLAMALFQIEQGIERRFLKAPLDASDSGRSYKTVL,*SSILKKIRQST*KRGGSKK**RSILSS*AIPSPFIWRRNERRKLVMMRQRKRKVRKKRKIKMMKKSPRSKMWVQMRRPQSVSSVVHYLAMALFQIEQGIERRFLKAPLDASDSGRSYKTVL,*SSILKKIRQST*KRGGSKK**RSILSS*AIPSPFIWRRNERRKLVMMRQRKRKVRKKRKIKMMKKSPRSKMWVQMRRPQSVSSVVHYLAMALFQIEQGIERRFLKAPLDASDSGRSYKTVL,*SSILKKIRQST*KRGGSKK**RSILSS*AIPSPFIWRRNERRKLVMMRQRKRKVRKKRKIKMMKKSPRSKMWVQMRRPQSVSSVVHYLAMALFQIEQGIERRFLKAPLDASDSGRSYKTVL,*SSILKKIRQST*KRGGSKK**RSILSS*AIPSPFIWRRNERRKLVMMRQRKRKVRKKRKIKMMKKSPRSKMWVQMRRPQSVSSVVHYLAMALFQIEQGIERRFLKAPLDASDSGRSYKTVL,*SSILKKIRQST*KRGGSKK**RSILSS*AIPSPFIWRRNERRKLVMMRQRKRKVRKKRKIKMMKKSPRSKMWVQMRRPQSVSSVVHYLAMALFQIEQGIERRFLKAPLDASDSGRSYKTVL,*SSILKKIRQST*KRGGSKK**RSILSS*AIPSPFIWRRNERRKLVMMRQRKRKVRKKRKIKMMKKSPRSKMWVQMRRPQSVSSVVHYLAMALFQIEQGIERRFLKAPLDASDSGRSYKTVL,*SSILKKIRQST*KRGGSKK**RSILSS*AIPSPFIWRRNERRKLVMMRQRKRKVRKKRKIKMMKKSPRSKMWVQMRRPQSVSSVVHYLAMALFQIEQGIERRFLKAPLDASDSGRSYKTVL,*SSILKKIRQST*KRGGSKK**RSILSS*AIPSPFIWRRNERRKLVMMRQRKRKVRKKRKIKMMKKSPRSKMWVQMRRPQSVSSVVHYLAMALFQIEQGIERRFLKAPLDASDSGRSYKTVL,, HSP90AB1:NM_001271969[1,6]-BAZ1A:NM_013448[21,27];HSP90AB1:NM_001271970[1,6]-BAZ1A:NM_013448[21,27];HSP90AB1:NM_001271971[1,6]-BAZ1A:NM_013448[21,27];HSP90AB1:NM_001271972[1,6]-BAZ1A:NM_013448[21,27];HSP90AB1:NM_007355[1,6]-BAZ1A:NM_013448[21,27];HSP90AB1:NM_001271969[1,6]-BAZ1A:NM_182648[20,26];HSP90AB1:NM_001271970[1,6]-BAZ1A:NM_182648[20,26];HSP90AB1:NM_001271971[1,6]-BAZ1A:NM_182648[20,26];HSP90AB1:NM_001271972[1,6]-BAZ1A:NM_182648[20,26];HSP90AB1:NM_007355[1,6]-BAZ1A:NM_182648[20,26];; geneB_transcripts=NM_013448,NM_182648 ,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,, MV4_11_RNAseq_1 NA chr11 23325635 - intergenic C12orf56 chr12 64679840 - coding > 0 31 100 291 0.940 0.000 1 1643 0.010 0.750 101 102 0 151 GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGACCAGTGACCTTTTCTATTTCATAGTAAACAAACTTCATGAGTACTTGCCGGAGTCTAGGGATAAGAATGCACTACAAAATCAAAGCCAAAGGGTTGATGAGCTGGTGGCATGCATTGAAATTATACAGACCCTAGTATTGATGTTCAGAGAAACAGAAACCGAGTCATCACGCCTGAACACATTGGCAGCTAAGAATTACAGAAGCTTATTCTGGAGTATACAAATACTGCTACAGCACTTTTATATGAGATACTTCTGGTCTTTCAGCAGGGAAATCTCGGATTGGGATCCACA CTX 99.58 LQ 0 NLoss 3,0,3,0 ,,, ,,, ,,, ,,, ,,, ,,, ,,, NM_001099676,NM_001099676,NM_001170633,NM_001170633 212,212,372,372 ,,, tuple,blat,tuple,blat 634,634,1114,1114 1389,1389,1869,1869 ,,, ,,, ,,, ;;; geneA_no_transcript_IDs_found;ERROR_geneB_multiple_matching_frames=NM_001099676;ERROR_geneB_multiple_matching_frames=NM_001170633 geneB_transcripts=NM_001099676,NM_001170633 ,,, ,,, MV4_11_RNAseq_1 ELP4 chr11 31565661 + intron C12orf56 chr12 64679840 - coding > 0 31 100 291 0.940 0.000 1 1643 0.000 0.750 101 102 206 151 GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGACCAGTGACCTTTTCTATTTCATAGTAAACAAACTTCATGAGTACTTGCCGGAGTCTAGGGATAAGAATGCACTACAAAATCAAAGCCAAAGGGTTGATGAGCTGGTGGCATGCATTGAAATTATACAGACCCTAGTATTGATGTTCAGAGAAACAGAAACCGAGTCATCACGCCTGAACACATTGGCAGCTAAGAATTACAGAAGCTTATTCTGGAGTATACAAATACTGCTACAGCACTTTTATATGAGATACTTCTGGTCTTTCAGCAGGGAAATCTCGGATTGGGATCCACA CTX 98.58 LQ 0 NLoss 0,0,0,0,0,0,0,0,0,0,0,0,3,0,3,0 NM_001288725,NM_001288726,NM_019040,NM_001288725,NM_001288726,NM_019040,NM_001288725,NM_001288726,NM_019040,NM_001288725,NM_001288726,NM_019040,,,, ,,,,,,,,,,,,,,, 3,3,3,3,3,3,3,3,3,3,3,3,,,, ,,,,,,,,,,,,,,, 381,381,381,381,381,381,381,381,381,381,381,381,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, NM_001099676,NM_001099676,NM_001099676,NM_001099676,NM_001099676,NM_001099676,NM_001170633,NM_001170633,NM_001170633,NM_001170633,NM_001170633,NM_001170633,NM_001099676,NM_001099676,NM_001170633,NM_001170633 212,212,212,212,212,212,372,372,372,372,372,372,212,212,372,372 5,5,5,5,5,5,7,7,7,7,7,7,,,, tuple,tuple,tuple,blat,blat,blat,tuple,tuple,tuple,blat,blat,blat,tuple,blat,tuple,blat 634,634,634,634,634,634,1114,1114,1114,1114,1114,1114,634,634,1114,1114 1389,1389,1389,1389,1389,1389,1869,1869,1869,1869,1869,1869,1389,1389,1869,1869 31,31,31,87,87,87,31,31,31,87,87,87,,,, ,,,,,,,,,,,,,,, RSQDGRIGTAPVYSSQRERRRRRVISAFPSETSDLFYFIVNKLHEYLPESRDKNALQNQSQRVDELVACIEIIQTLVLMFRETETESSRLNTLAAKNYRSLFWSIQILLQHFYMRYFWSFSREISDWDP,RSQDGRIGTAPVYSSQRERRRRRVISAFPSETSDLFYFIVNKLHEYLPESRDKNALQNQSQRVDELVACIEIIQTLVLMFRETETESSRLNTLAAKNYRSLFWSIQILLQHFYMRYFWSFSREISDWDP,RSQDGRIGTAPVYSSQRERRRRRVISAFPSETSDLFYFIVNKLHEYLPESRDKNALQNQSQRVDELVACIEIIQTLVLMFRETETESSRLNTLAAKNYRSLFWSIQILLQHFYMRYFWSFSREISDWDP,EEPRWPNRNSSGLQLPA*ATQKTGDFCISI*DQ*PFLFHSKQTS*VLAGV*G*ECTTKSKPKG**AGGMH*NYTDPSIDVQRNRNRVITPEHIGS*ELQKLILEYTNTATALLYEILLVFQQGNLGLGST,EEPRWPNRNSSGLQLPA*ATQKTGDFCISI*DQ*PFLFHSKQTS*VLAGV*G*ECTTKSKPKG**AGGMH*NYTDPSIDVQRNRNRVITPEHIGS*ELQKLILEYTNTATALLYEILLVFQQGNLGLGST,EEPRWPNRNSSGLQLPA*ATQKTGDFCISI*DQ*PFLFHSKQTS*VLAGV*G*ECTTKSKPKG**AGGMH*NYTDPSIDVQRNRNRVITPEHIGS*ELQKLILEYTNTATALLYEILLVFQQGNLGLGST,RSQDGRIGTAPVYSSQRERRRRRVISAFPSETSDLFYFIVNKLHEYLPESRDKNALQNQSQRVDELVACIEIIQTLVLMFRETETESSRLNTLAAKNYRSLFWSIQILLQHFYMRYFWSFSREISDWDP,RSQDGRIGTAPVYSSQRERRRRRVISAFPSETSDLFYFIVNKLHEYLPESRDKNALQNQSQRVDELVACIEIIQTLVLMFRETETESSRLNTLAAKNYRSLFWSIQILLQHFYMRYFWSFSREISDWDP,RSQDGRIGTAPVYSSQRERRRRRVISAFPSETSDLFYFIVNKLHEYLPESRDKNALQNQSQRVDELVACIEIIQTLVLMFRETETESSRLNTLAAKNYRSLFWSIQILLQHFYMRYFWSFSREISDWDP,EEPRWPNRNSSGLQLPA*ATQKTGDFCISI*DQ*PFLFHSKQTS*VLAGV*G*ECTTKSKPKG**AGGMH*NYTDPSIDVQRNRNRVITPEHIGS*ELQKLILEYTNTATALLYEILLVFQQGNLGLGST,EEPRWPNRNSSGLQLPA*ATQKTGDFCISI*DQ*PFLFHSKQTS*VLAGV*G*ECTTKSKPKG**AGGMH*NYTDPSIDVQRNRNRVITPEHIGS*ELQKLILEYTNTATALLYEILLVFQQGNLGLGST,EEPRWPNRNSSGLQLPA*ATQKTGDFCISI*DQ*PFLFHSKQTS*VLAGV*G*ECTTKSKPKG**AGGMH*NYTDPSIDVQRNRNRVITPEHIGS*ELQKLILEYTNTATALLYEILLVFQQGNLGLGST,,,, ELP4:NM_001288725[1,3]-C12orf56:NM_001099676[5,11];ELP4:NM_001288726[1,3]-C12orf56:NM_001099676[5,11];ELP4:NM_019040[1,3]-C12orf56:NM_001099676[5,11];ELP4:NM_001288725[1,3]-C12orf56:NM_001099676[5,11];ELP4:NM_001288726[1,3]-C12orf56:NM_001099676[5,11];ELP4:NM_019040[1,3]-C12orf56:NM_001099676[5,11];ELP4:NM_001288725[1,3]-C12orf56:NM_001170633[7,13];ELP4:NM_001288726[1,3]-C12orf56:NM_001170633[7,13];ELP4:NM_019040[1,3]-C12orf56:NM_001170633[7,13];ELP4:NM_001288725[1,3]-C12orf56:NM_001170633[7,13];ELP4:NM_001288726[1,3]-C12orf56:NM_001170633[7,13];ELP4:NM_019040[1,3]-C12orf56:NM_001170633[7,13];;;; ERROR_geneB_multiple_matching_frames=NM_001099676;ERROR_geneB_multiple_matching_frames=NM_001170633 geneB_transcripts=NM_001099676,NM_001170633 ,,,,,,,,,,,,,,, 2,2,2,1,1,1,2,2,2,1,1,1,,,, MV4_11_RNAseq_1 VAV1 chr19 6857372 + 3utr POMZP3 chr7 76253782 - intron > 0 3 171 102 0.000 0.480 0 98 0.170 0.090 171 173 13 85 CTCCCGGCGGGTGGAGACTTTGGGATGGACTGGAGGAGGCCAGCGTCCAGCTGGCGGTGCTCCCGGGATGTGCCCTGACATGGTTAATTTATAACACCCCGATTTCCTCTTGGGTCCCCTCAAGCAGACGGGGCTCAAGGGGGTTACATTTAATAAAAGGATGAAGATGGAAAAAAAAAAAAAAAATTCCTTATGTGGTTTGTAAAATAACCTAATGAAAATGGAATAGTTTTCTAATTACAGAAAGAAAAGAAGTTGAAGTGGGTTTCGCCATG CTX 98.00 LQ 1 other ,,,,, NM_001258206,NM_001258206,NM_001258207,NM_001258207,NM_005428,NM_005428 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_012230,NM_152992,NM_012230,NM_152992,NM_012230,NM_152992 ,,,,, ,,,,, ,,,,, 227,227,227,227,227,227 564,348,564,348,564,348 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_012230,NM_152992 ,,,,, ,,,,, MV4_11_RNAseq_1 MOCS1 chr6 39926386 + intron RANGAP1,MIR6889 chr22 41657584 - coding > 8 2 262 194 0.520 0.000 48 103 0.640 0.040 274 301 16 565 TTTGGGTTTAGTTTTTTTTTATTTTTTACAAATATACTGGAGAATCATGCAATGCTGCCAGCATTGGATGCAATCCGGGGCCACAAGTCTGCACACTCCTTTGCTACTGGTCCTGTAATGGCAGAACCTTTCATCTCGCCTTTATTGTTCACTATGACTCCTGCATTATCTTCAAAATAAAGAAACACGCCATCTTTTCTACGGTATGACTTTCGTTGTCGAATGACCACTGCTGGATGTACCTTTTTTCTGAGCTCTGGTTTGCCTTTCTTGACTGTGGCCTGGGCATTGGCGGCGGCAAGATCCTGGCTGCAGCTCTGACCGAATGTCACCGGAAATCCAGTGCCCAAGGCAAGCCTCTGGCCCTGAAGGTCTTTGTGGCTGGCAGAAACCGTCTGGAGAATGATGGCGCCACTGCCTTGGCAGAAGCTTTTAGGGTCATCGGGACCCTGGAGGAGGTCCACATGCCACAGAATGGGATCAACCACCCTGGC CTX 97.44 LQ 0 NLoss 3,3 , , , , , , , NM_001278651,NM_002883 161,161 , tuple,tuple 481,481 1764,1764 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_001278651,NM_002883 , , MV4_11_RNAseq_1 TMBIM6 chr12 50158508 + 3utr EME1 chr17 48452205 + intron > 1 2 339 80 0.000 0.830 13 95 0.010 0.020 340 339 1258 42 CCAGGTTCACAGTGCACCATGTCACTGTGCTATCCTACGAAATCATTTGTTTCTAAGTTGTGTTTATTCCTGGAGTGACATGCCACCCCGAATGGCTCACTTTCACTGAGGATGCTGTCCTCTGATTTAGCTGCTGCCTCCAGCCTCTGGCTTGAGAACTTACTAAAGGCACTTCCTTCCTGTTAAACCCCTGTTAACTCTCCATAAATTTGGTGATTCTCTGCTAGGCCTAAGATTTTGAGTTAACATCTCTTGAAGCCAAACTCCACCTTCTGTGCTTTTTGCTTGGGATAATGGAGTTTTTCTTTAGAAACAGTGCCAAGAATGACAAGATATTAAAAAAAAAAAAAAAGAACTTTTGACATCTCCATTTCAAACGTGAAGGTAAACAAGGGGTTGGAGGTGTTAAATCTTGTTAC CTX 97.21 LQ 0 other ,,, NM_001098576,NM_001098576,NM_003217,NM_003217 ,,, ,,, ,,, ,,, ,,, ,,, NM_001166131,NM_152463,NM_001166131,NM_152463 ,,, ,,, ,,, ,,, 1752,1713,1752,1713 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001166131,NM_152463;geneb_utr_codons=8 ,,, ,,, MV4_11_RNAseq_1 MTA2 chr11 62360921 + 3utr HSD17B11 chr4 88312266 - 5utr ? 0 5 94 58 0.000 0.650 1 192 0.000 0.500 94 93 107 353 GCCTGGGGTTGATGCCAGCTTAGGGGCCTCAAACTCCAATTAGGAAAGTCCGGACACCGGACAGAAAGAGAAACCCCCAATTAGGAAAAAAAAAAAAAAAAAAAAAAACACACCAAACGCTCGCAGCCACAAAAGGGATGAAATTTCTTCT CTX 96.00 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 LOC100288798 chr12 46965195 + 5utr NA chr12 47270358 + intergenic > 13 14 46 134 0.000 0.000 953 247 0.100 0.930 46 46 101 14 ATTGCTGTATGCACATCTGAATCTGTTTACAATTTGAGAATAGAGGATCAAGTTCAGATGGCTTACGGTTGAGATACATGTTGCTATGGCAGCAGGAAGAAAATGATGGAAAAGAAGAAAACAAAAAGCAAGAAAAAGTGAGAAATCAAAGGACAACATTTTCAAGGATGAAGAGTGCT DEL 95.30 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 MYLIP,MIR4639 chr6 16148059 - 3utr HMGN3 chr6 79912106 - coding > 4 2 142 155 0.000 0.510 136 27 0.040 0.010 143 156 301 1235 CTTTACCTTAGCTAGTATTGCACCCGATAAGGTCATCTAGGTCTCCCGACATCCCAGAAAACCTGCTAGCTGACCAGCTTCCAAAATGCCCAAGTGGGAGTGGAAAACATGTTTAAGAAAACAGAAGCAAAAAGAACCAAAAAAAACATCTGCTAAGAAAGAACCTGGAGCAAAGATTAGCAGAGGTGCTAAAGGGAAGAAGGAGGAAAAGCAGGAAGCTGGAAAGGAAGGCACAGAAAACTGAATCTGTAGATAACGAGGGAGAATGAATTGTCATGAAAAATTGGGGTTGATTTTATGTATCTCTTGGAGAT INS 93.64 LQ 0 NLoss 0,0,0,0,0,0,3,0,3,0,3,3 NM_013262,NM_013262,NM_013262,NM_013262,NM_013262,NM_013262,,,,,, ,,,,,,,,,,, 7,7,7,7,7,7,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001201362,NM_001201363,NM_001201363,NM_004242,NM_004242,NM_138730,NM_001201362,NM_001201363,NM_001201363,NM_004242,NM_004242,NM_138730 50,50,50,50,50,50,50,50,50,50,50,50 5,5,5,5,5,5,,,,,, tuple,blat,tuple,blat,tuple,tuple,tuple,blat,tuple,blat,tuple,tuple 148,148,148,148,148,148,148,148,148,148,148,148 288,393,393,300,300,234,288,393,393,300,300,234 52,76,52,76,52,52,,,,,, ,,,,,,,,,,, FTLASIAPDKVI*VSRHPRKPAS*PASKMPKWEWKTCLRKQKQKEPKKTSAKKEPGAKISRGAKGKKEEKQEAGKEGTEN*ICR*RGRMNCHEKLGLILCISWR,LP*LVLHPIRSSRSPDIPENLLADQLPKCPSGSGKHV*ENRSKKNQKKHLLRKNLEQRLAEVLKGRRRKSRKLERKAQKTESVDNEGE*IVMKNWG*FYVSLGD,FTLASIAPDKVI*VSRHPRKPAS*PASKMPKWEWKTCLRKQKQKEPKKTSAKKEPGAKISRGAKGKKEEKQEAGKEGTEN*ICR*RGRMNCHEKLGLILCISWR,LP*LVLHPIRSSRSPDIPENLLADQLPKCPSGSGKHV*ENRSKKNQKKHLLRKNLEQRLAEVLKGRRRKSRKLERKAQKTESVDNEGE*IVMKNWG*FYVSLGD,FTLASIAPDKVI*VSRHPRKPAS*PASKMPKWEWKTCLRKQKQKEPKKTSAKKEPGAKISRGAKGKKEEKQEAGKEGTEN*ICR*RGRMNCHEKLGLILCISWR,FTLASIAPDKVI*VSRHPRKPAS*PASKMPKWEWKTCLRKQKQKEPKKTSAKKEPGAKISRGAKGKKEEKQEAGKEGTEN*ICR*RGRMNCHEKLGLILCISWR,,,,,, MYLIP:NM_013262[1,7]-HMGN3:NM_001201362[5,5];MYLIP:NM_013262[1,7]-HMGN3:NM_001201363[5,7];MYLIP:NM_013262[1,7]-HMGN3:NM_001201363[5,7];MYLIP:NM_013262[1,7]-HMGN3:NM_004242[5,6];MYLIP:NM_013262[1,7]-HMGN3:NM_004242[5,6];MYLIP:NM_013262[1,7]-HMGN3:NM_138730[5,6];;;;;; ERROR_geneB_multiple_matching_frames=NM_001201363;ERROR_geneB_multiple_matching_frames=NM_004242 geneB_transcripts=NM_001201362,NM_001201363,NM_004242,NM_138730 ,,,,,,,,,,, 1,2,1,2,1,1,,,,,, MV4_11_RNAseq_1 BASP1 chr5 17276951 + 3utr TAX1BP1 chr7 27868484 + 3utr > 1 4 105 223 0.000 0.000 45 48 1.000 0.050 106 103 4 719 AAAAAAAAAAAAAAAAAAAAAAACAAAAAAATGTAAAAGGGATGCATTAAAATTATATGTAATTGTAAAAATGGTGCAACAGTAATAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACACCTAAAATAGACCACTGAGGAGACCATAGAGCGGATGCTTTCATGCACCCTTTACTGCACTTTCTGACCAGGAGCTACTTTGAGTTTGGTGTTACTAGGATCAGGGTCAGTCTTTGGCTTATCAATAAATTTTAATCTCTGTTAATCTTACCTGCTTTAAAAAAAAGTTCTTGTGTGTTCGTATCTTTATTTATTCCCTAG CTX 93.00 LQ 2 other ,,,,,,, NM_001271606,NM_001271606,NM_001271606,NM_001271606,NM_006317,NM_006317,NM_006317,NM_006317 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, NM_001079864,NM_001206901,NM_001206902,NM_006024,NM_001079864,NM_001206901,NM_001206902,NM_006024 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, 2244,2244,1773,2370,2244,2244,1773,2370 ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001079864,NM_001206901,NM_001206902,NM_006024;geneb_utr_codons=13 ,,,,,,, ,,,,,,, MV4_11_RNAseq_1 TSPAN9 chr12 3320761 - intron ZBTB7A chr19 4046582 - 3utr > 3 0 106 142 0.920 0.000 92 0 0.810 0.000 107 100 51 227 TTACAGAAGGATGTTCCTTCAGGAGGAAGCAGCACTAAAAGCACTCTGAGTCAAGATGAGTGGGAAACCATCTCAATAAACACATTTTGGATAAAAAAAAAAAAAAAAAAGGCAACCAACCACATTAGAAGTCTTGGCACTTTGTAACGGAACGGGTACTACACTTTATCTTAATTCTTAATTTAAAAACATGTTTACAAGTTACAACCAACTTCTATGAAAAGTTGAAAAGACAAAAAAA CTX 92.00 LQ 0 other , NM_001168320,NM_006675 , , , , , , NM_015898,NM_015898 , , , , 1755,1755 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_015898;geneb_utr_codons=13 , , MV4_11_RNAseq_1 FNDC3B chr3 171830371 + coding GPS1 chr17 80015336 - 3utr > 0 3 76 171 0.000 0.030 1 92 0.000 0.090 76 80 61 600 GACCAAATCCCTCTGGAACTGCCACCATTGCTGAACGGAGAGGTAGCCATGATGCCCCACTTGGTGAATGGAGATGAGTCTGCTCTTTAATGGACACCGCCCACTTGTCTGCACCTGACTGAGGCGGGAACAGGAGGGGTCTGGGAAATGGTGCCACTGGGCCTGGGTGCCGCACAGTCTGCTCCCTGGGGACAGAAACCCACAGGGTCGAGCCCTGCAGGCCTCTCCTTCCAGGAAGGGCCACAACTAGC CTX 92.00 LQ 0 CLoss ,,, NM_001135095,NM_001135095,NM_022763,NM_022763 ,,, ,,, ,,, 102,102,102,102 ,,, ,,, NM_004127,NM_212492,NM_004127,NM_212492 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_004127,NM_212492;geneB_transcript_strand_disagree=NM_004127;geneb_utr_codons=5;geneB_transcript_strand_disagree=NM_212492 ,,, ,,, MV4_11_RNAseq_1 SNRPD2 chr19 46190714 - 3utr PTGER4 chr5 40679368 - intron > 5 5 368 62 0.490 0.000 89 180 0.250 0.400 368 378 25 17 CTCTGTGCTCACACAGTCAGTCAAGAACAATACCCAAGTGCTCATCAACTGCCGCAACAATAAGAAACTCCTGGGCCGCGTGAAGGCCTTCGATAGGCACTGCAACATGGTGCTGGAGAACGTGAAGGAGATGTGGACTGAGGTACCCAAGAGTGGCAAGGGCAAGAAGAAGTCCAAGCCAGTCAACAAAGACCGCTACATCTCCAAGATGTTCCTGCGCGGGGACTCAGTCATCGTGGTCCTGCGGAACCCGCTCATCGCCGGCAAGTAGGGGCCGCCTGTCTGTTGACAGAACTCACTCCTCTGTCCTATGAAGACCGCTGCCATTGGTGTTGAGAATAATAAAGCTCTGTGTTTTTTTCTAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGAAAGAAAGAGGAGGAGACAGTGATTGCAGCCTCTCCCGGCG CTX 91.93 LQ 0 other , NM_004597,NM_177542 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 POLR2L chr11 840204 - 3utr CEP350 chr1 180082518 + 3utr > 1 2 134 132 0.000 0.010 14 78 0.060 0.100 149 149 172 82 CCAGCCGTGCCGAACATGGGCCCTGAGCGTCCTGCCCCGAATTCACGAGGCTGAGGCATCCGGGAGCTGGCGTAATGCCTGGCCGCAGTGTGTGTGTATCCCATACCCCACTCTGGAAGGAACCATCCAGTAAAGGTCTTTCAGAACCAAAAAAAAAAAAAATACAAGTCATGGAATCAGCAATCTGGTAAGAAATGCTGCCAAGAATGTGGCAGTAGCTGTCCTGACAGACTCCAACTGTCTTTACTATCTGAAGAATCCTAGGCTCCACATGAGAGGCA CTX 91.86 LQ 2 other NM_021128 NM_014810 9354 geneB_no_inframe_contig_found geneB_transcripts=NM_014810;geneb_utr_codons=13 MV4_11_RNAseq_1 TAPT1 chr4 16257860 - intron GCSH chr16 81116359 - 3utr > 0 4 74 136 0.000 0.740 1 147 0.000 0.020 77 68 0 946 TTTTGACTGGAGAGAATCACAGATGTGGAATATTTGTCATAAATAAATAATGAAAACCTAAAAAAAAAAAAAAAAAACTACTGTTAACACTGCTAATGAAAGAAAATGCCCTTTAACTTTCTAATGATTATAGATAAATATAATATGCGTCTTTTTCACAATATCCTATGATTTTTAGACTAGGCTCTAGTGTTCAGAATTCATAGATCGGAAGAGCGTC CTX 89.16 LQ 0 other NM_004483 522 geneB_no_inframe_contig_found geneB_transcripts=NM_004483;geneb_utr_codons=13 MV4_11_RNAseq_1 NONO chrX 70521018 + 3utr PEBP1 chr12 118582974 + 3utr > 2 2 193 62 0.500 0.000 40 178 1.000 0.030 193 192 3 5239 CTTGGGAACAGGGTTACTGTATACTGAAGGTCTGACAGTAGCTCTTAGACTCGCCTATCTTAGGTAGTCATGCTGTGCATTTTTTTTTTCATTGGTGTACTGTGTTTGATTTGTCTCATATATTTGGAGTTTTTCTGAAAAATGGAGCAGTAATGCAGCATCAACCTATTAAAATACATTTTAAGCCTTTTAAAAAAAAAAAAAAAAAAAAAAGATTGGTTGCCTCTGCCTTTGTGATCCTGAGTCCAGAATGG CTX 89.06 LQ 1 other ,,, NM_001145408,NM_001145409,NM_001145410,NM_007363 ,,, ,,, ,,, ,,, ,,, ,,, NM_002567,NM_002567,NM_002567,NM_002567 ,,, ,,, ,,, ,,, 564,564,564,564 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_002567;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 CDKN2A chr9 21968132 + 3utr SNRPB chr20 2451419 - 5utr ? 0 4 77 331 0.000 0.020 0 176 0.000 0.150 77 80 1427 1286 GGGGAAGGCATATATCTACGTTAAAAGGCAGGACATTTTTAAAAGCTCTATTTTCTAAATGAAAACTACGAAAGCGGCGGCGGGAAATCGGCTGTGGGAGAGAGGCTAGGCCTCTGAGGAGGCGAATCCGGCGGGTATCAGAGCCATCAGAACCGCCACCATGACGGTGGGCAAGAGCAGCAAGATGCTGCAGCATATTGATTACAGGATGAGGTGCATCCTGCAGGACGGCCGGATCTTCATTGGCACCTTCAAGGCTTTTGACAAGCACATGAATTTGATCCTCTGTGACTGTGATGAGTTCAGAAAGATCAAGCCAAAGAACTCCAAACAAGCAGAAAGGGAAGAGAAGCGAGTCCTCGGTCTGGTACTGCTACGAGGGGAGAATCTGGTCTCAATGACAGTAGAGGGC CTX 88.00 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 MIR3675 chr1 17011856 + intergenic PCNP chr3 101295283 + intron > 0 9 84 73 0.500 0.860 0 175 0.090 0.030 85 78 309 485 GGACAAGGCAAATGATTTCTTCAAAACACCCATTTGCTTACTGGAAGTGGTAGGAAAAGCAGCAATGCATGGTTTTTTTTTTTTTAGGTATATAAACTATTTATTAACAGACAAGGCCTACAGACTTATTTCTTCTTGGACACACCCACGG CTX 87.50 LQ 0 other NM_020357 64 537 geneB_no_inframe_contig_found geneB_transcripts=NM_020357 MV4_11_RNAseq_1 PCNP chr3 101295283 - intron EIF1AX chrX 20146169 - 3utr > 9 0 73 84 0.860 0.500 175 0 0.030 0.050 74 67 485 1742 CCGTGGGTGTGTCCAAGAAGAAATAAGTCTGTAGGCCTTGTCTGTTAATAAATAGTTTATATACCTAAAAAAAAAAAAACCATGCATTGCTGCTTTTCCTACCACTTCCAGTAAGCAAATGGGTGTTTTGAAGAAATCATTTGCCTTGTCC CTX 87.50 LQ 0 other NM_020357 NM_001412 435 geneB_no_inframe_contig_found geneB_transcripts=NM_001412;geneb_utr_codons=13 MV4_11_RNAseq_1 RAB3GAP2 chr1 220428041 - intron LSM7 chr19 2328465 - coding > 1 4 183 147 0.670 0.020 43 134 0.220 0.060 190 178 51 3842 TTTTGTCATATAGCATTAACATGTATTATAAAAGTGCGTAGTGTCAAAGGAATAGAACCACCAGCATTCAAAAGCAGCTTTGTCAACTAGGCAATAAAACACTCTACAGCATATCCCTCTGTTGTCCATCATTGAAAACACTGGCAGCAATTTTGAAATGAAAAAAAAAAAAGAAAGAAGGAAAAAGGAGAGCATCTTGGACTTGTCCAAGTACATCGACAAGACGATCCGGGTAAAGTTCCAGGGAGGCCGCGAAGTGGAATCCTGAAGGGCTTCGACCCACTCCTCAACCTTGTGCTGGACGGCACCATTGAGTACATGCGAGACCCTGAC CTX 86.36 LQ 0 NLoss 0,3 NM_012414, , 1, , 115, , , NM_016199,NM_016199 6,6 2, blat,blat 18,18 312,312 60, , FVI*H*HVL*KCVVSKE*NHQHSKAALSTRQ*NTLQHIPLLSIIENTGSNFEMKKKKERRKKESILDLSKYIDKTIRVKFQGGREVES*RASTHSSTLCWTAPLSTCETL, RAB3GAP2:NM_012414[1,1]-LSM7:NM_016199[2,4]; geneB_blat_issues=too_many_mismatches geneB_transcripts=NM_016199 , 1, MV4_11_RNAseq_1 EMB chr5 49692119 - 3utr CRLS1 chr20 5976926 + intron > 0 3 112 69 0.480 0.000 0 166 0.000 0.010 144 150 2663 31 GTCTTATAAATATACCCTTGTTGTCCTCCATCTTGGATTATTTTGTTTCTTTGTCCTATACCTACCACTGAAAGGGTGCAATACAGCTTTCTTGAAATGTGTATTGAACGGATGAATGTATAAATAAAAATTAAATTTTGTAAAAAAAAAAAAAAAAAAAAAAATGGAGAAAGTAGATAGTAGTATAAATATAGTGAAGTCTTTAAAAGCTAGGAGTTA CTX 86.32 LQ 0 other NM_198449 geneB_no_transcripts MV4_11_RNAseq_1 C4orf3 chr4 120219643 - 3utr NA chr6 68597536 - intergenic > 2 1 203 146 0.000 0.000 29 57 0.010 0.050 203 199 239 206 CTCAATAGAAGAATTTCACATCTCCAAGGGACCCTTCCTTTCATTTTACACTTTGTTACTAATTTGCAGAACTCTATTAATTGGGTAGGATTTCACCCATTCCTAGCTAAGTTCTTAAAATTAAACCCTTTGGTTCGTGTTTAAAAACTTTCAAACATCTGATGGCTTTACAGGGGCTGAATATAAAAGCATTTGTACTTAAAAAACAAAAACAAAAACAAAAAAAACCACTCAGAACAAAGATAAAAATCCAGCTCAGTTTATGGCCTGTCTACCTGCCACCCTCAGGCGATATACAGCACTAGACCCTGAAGGGATAGAAGGCCGCCTTATTCTTAACATGCA CTX 86.00 LQ 0 other , NM_001001701,NM_001170330 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 SETD9 chr5 56207366 + coding PLAC8 chr4 84035873 - 5utr > 2 1 124 304 0.140 0.000 42 51 0.010 0.250 129 149 183 808 GATCTCTTTACAAGACTTTGGGTTTCAGTGTTGCCCAAGCAACTAGCTCATTGATTTCTGCTGGAAAAGGTGTCTTCGTTACTAAAGGATTGGTACCAAAAGGCGCAGTCGTATCTATGTATCCTGGTACAGTATATCAGAAGTATGAGTGAGATTCTCTCCCAGGCCACAAGACATTTCCTGCTCGGAACCTTGTTTACTAATTTCCACTGCTTTTAAGGCCCTGCACTGAAAATGCAAGCTCAGGCGCCGGTGGTCGTTGTGACCCAACCTGGAGTCGGTCCCGGTCCGGCCCCCCAGAACTCCAACTGGCAGACAGGCATGTGTGACTGTTTCAGCGACTGCGGAGTCTGTCTCTGTGGCACATTTTGTTTCCCGTGCCTTGGGTGTCAAGTTGCAGCTGATATGAATGAATGCTGTCTGTGTGGAACAAGCGTCGCAATGAGGACTCT CTX 85.86 LQ 0 CLoss 0,0,0,0,3,3 NM_001171990,NM_153706,NM_001171990,NM_153706,, ,,,,, 2,2,2,2,, ,,,,, 466,466,466,466,, ,,,,, ,,,,, NM_001130715,NM_001130715,NM_016619,NM_016619,NM_001130715,NM_016619 -27,-27,-27,-27,-27,-27 1,1,1,1,, tuple,tuple,tuple,tuple,tuple,tuple ,,,,, 348,348,348,348,348,348 53,53,53,53,, ,,,,, DLFTRLWVSVLPKQLAH*FLLEKVSSLLKDWYQKAQSYLCILVQYIRSMSEILSQATRHFLLGTLFTNFHCF*GPALKMQAQAPVVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECCLCGTSVAMRT,DLFTRLWVSVLPKQLAH*FLLEKVSSLLKDWYQKAQSYLCILVQYIRSMSEILSQATRHFLLGTLFTNFHCF*GPALKMQAQAPVVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECCLCGTSVAMRT,DLFTRLWVSVLPKQLAH*FLLEKVSSLLKDWYQKAQSYLCILVQYIRSMSEILSQATRHFLLGTLFTNFHCF*GPALKMQAQAPVVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECCLCGTSVAMRT,DLFTRLWVSVLPKQLAH*FLLEKVSSLLKDWYQKAQSYLCILVQYIRSMSEILSQATRHFLLGTLFTNFHCF*GPALKMQAQAPVVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECCLCGTSVAMRT,, SETD9:NM_001171990[1,2]-PLAC8:NM_001130715[1,4];SETD9:NM_153706[1,2]-PLAC8:NM_001130715[1,4];SETD9:NM_001171990[1,2]-PLAC8:NM_016619[1,5];SETD9:NM_153706[1,2]-PLAC8:NM_016619[1,5];; geneB_transcripts=NM_001130715,NM_016619;geneb_utr_codons=13 ,,,,, 0,0,0,0,, MV4_11_RNAseq_1 TMCO1 chr1 165737429 - coding RRM2 chr2 10269409 + coding > 7 0 59 81 0.370 0.650 245 1 0.010 0.000 147 157 1054 1073 CTGGATGAAGGCGAAGGCATACTCCGTGGCTTGAGCTGGCAGCACCCGAGTGCTGAAGGCAGGTGATAGGGTACCCAGGCGGGTGGATTACAGGACAGACAAGTACAAGAGACTGAAGGCAGAAGTGGAAAAACAGAGTAAAAAATTGGAAAAGAAGAAGGAAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCAAGTCCAACAGAGAATTCTN CTX 85.75 LQ 0 Fusion 0,0,0,0,0,0,3,3 NM_001256164,NM_001256165,NM_019026,NM_001256164,NM_001256165,NM_019026,, ,,,,,,, 2,2,2,2,2,2,, ,,,,,,, 199,112,301,199,112,301,, ,,,,,,, ,,,,,,, NM_001034,NM_001034,NM_001034,NM_001165931,NM_001165931,NM_001165931,NM_001034,NM_001165931 356,356,356,416,416,416,356,416 10,10,10,10,10,10,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 1066,1066,1066,1246,1246,1246,1066,1246 1170,1170,1170,1350,1350,1350,1170,1350 52,52,52,52,52,52,, ,,,,,,, LDEGEGILRGLSWQHPSAEGR**GTQAGGLQDRQVQETEGRSGKTE*KIGKEEGKTNFFEKRVGEYQRMGVMSSPTENS,LDEGEGILRGLSWQHPSAEGR**GTQAGGLQDRQVQETEGRSGKTE*KIGKEEGKTNFFEKRVGEYQRMGVMSSPTENS,LDEGEGILRGLSWQHPSAEGR**GTQAGGLQDRQVQETEGRSGKTE*KIGKEEGKTNFFEKRVGEYQRMGVMSSPTENS,LDEGEGILRGLSWQHPSAEGR**GTQAGGLQDRQVQETEGRSGKTE*KIGKEEGKTNFFEKRVGEYQRMGVMSSPTENS,LDEGEGILRGLSWQHPSAEGR**GTQAGGLQDRQVQETEGRSGKTE*KIGKEEGKTNFFEKRVGEYQRMGVMSSPTENS,LDEGEGILRGLSWQHPSAEGR**GTQAGGLQDRQVQETEGRSGKTE*KIGKEEGKTNFFEKRVGEYQRMGVMSSPTENS,, TMCO1:NM_001256164[1,2]-RRM2:NM_001034[10,10];TMCO1:NM_001256165[1,2]-RRM2:NM_001034[10,10];TMCO1:NM_019026[1,2]-RRM2:NM_001034[10,10];TMCO1:NM_001256164[1,2]-RRM2:NM_001165931[10,10];TMCO1:NM_001256165[1,2]-RRM2:NM_001165931[10,10];TMCO1:NM_019026[1,2]-RRM2:NM_001165931[10,10];; geneB_transcripts=NM_001034,NM_001165931 ,,,,,,, 0,0,0,0,0,0,, MV4_11_RNAseq_1 DDX21 chr10 70743455 - 3utr ARPC4,ARPC4-TTLL3,TTLL3 chr3 9848217 + 3utr ? 2 4 426 131 0.340 0.000 140 46 0.050 0.010 427 428 1052 1574 GCCACTCTTAAGCTCCTGTGCTATGTAGAATGTTTCCCAGAGAAATAATATCTGAGAAATCAGGCAGTTATCTGGCCAGGGGCTACATCAGGTTCTTCAGTTCCCTCAAAACAACTTAATCACATACAGTTTGTCTTAAAAGGAAGCCTCCAAGCAGCTAAAACAAACTTTCAACAGACATTCAGTTTAACAGATCCTATACTGTGGCTTTAGGAACTAGGCCACTGACTACCTAAAAACCCCAGCTTGCCCACTTGAAGTTAACCTCTAGAAACATTAGTGATCTGTGAAGTTTTCACCATTAAAACAATGCTTTATCATCCAAATCATACTTGTTCTTCTCTTTGCTTTCCAGTTATGAATTTGTTACCTTTTTGCATTTGATTATTTCCAGTGGTTTGGTTCTTTTTTTTTTTTTTTTTTTTTTTATACCTCCACCTCCAGTGGCTGTGACTGGTCCCAGTGATTATACGTTATTGGTTGCTGTGGGTCTGGGCGGGCCTGGAGCCAGAAGGCGACTTATTTTTTCTCTCCTATGCCACCCCAGGTGGGGAGGGA CTX 85.18 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 EIF3B chr7 2414241 + coding GLRX chr5 95152330 - coding > 4 2 230 136 0.000 0.480 43 85 0.000 0.010 231 245 1603 651 GGTACCTGTGGATGTGGTCGAGATGAAAGAAACCATCATAGCCTTTGCCTGGGAACCAAATGGAAGTAAGGTTGCTGTGCTGCACGGAGAGGCTCCGCGGATATCTGTGTCTTTCTACCACGTCAAAAACAACGGGAAGATTGAACTCATCAAGATGTTCGACAAGCAGCAGGCGAACACCATCTTCTGGAGCCCCCAAGGACAGTTCGTGGTGTTGGCGGGCCTGAGGAGTATGAACGGTGCCTCGAGTCTTTATCGGTAAAGATTGTATAGGCGGATGCAGTGATCTAGACTCTTTGCAACAGAAAGGGGAACTGCTGACGCGGCTAAAGCAGATTGGAGCGCTGCAGTAATCACAGATCTCATAGGAAAAGTTCAACA CTX 85.00 LQ 0 Fusion 0,0,0,0,0,0,0,0,0,0,0,0 NM_001037283,NM_003751,NM_001037283,NM_003751,NM_001037283,NM_003751,NM_001037283,NM_003751,,,, ,,,,,,,,,,, 13,13,13,13,13,13,13,13,,,, ,,,,,,,,,,, 1889,1889,1889,1889,1889,1889,1889,1889,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001118890,NM_001118890,NM_001243658,NM_001243658,NM_001243659,NM_001243659,NM_002064,NM_002064,NM_001118890,NM_001243658,NM_001243659,NM_002064 70,70,70,70,70,70,70,70,70,70,70,70 2,2,2,2,2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 208,208,208,208,208,208,208,208,208,208,208,208 321,321,321,321,321,321,321,321,321,321,321,321 79,79,79,79,79,79,79,79,,,, ,,,,,,,,,,, YLWMWSR*KKPS*PLPGNQMEVRLLCCTERLRGYLCLSTTSKTTGRLNSSRCSTSSRRTPSSGAPKDSSWCWRA*GV*TVPRVFIGKDCIGGCSDLDSLQQKGELLTRLKQIGALQ*SQIS*EKFN,YLWMWSR*KKPS*PLPGNQMEVRLLCCTERLRGYLCLSTTSKTTGRLNSSRCSTSSRRTPSSGAPKDSSWCWRA*GV*TVPRVFIGKDCIGGCSDLDSLQQKGELLTRLKQIGALQ*SQIS*EKFN,YLWMWSR*KKPS*PLPGNQMEVRLLCCTERLRGYLCLSTTSKTTGRLNSSRCSTSSRRTPSSGAPKDSSWCWRA*GV*TVPRVFIGKDCIGGCSDLDSLQQKGELLTRLKQIGALQ*SQIS*EKFN,YLWMWSR*KKPS*PLPGNQMEVRLLCCTERLRGYLCLSTTSKTTGRLNSSRCSTSSRRTPSSGAPKDSSWCWRA*GV*TVPRVFIGKDCIGGCSDLDSLQQKGELLTRLKQIGALQ*SQIS*EKFN,YLWMWSR*KKPS*PLPGNQMEVRLLCCTERLRGYLCLSTTSKTTGRLNSSRCSTSSRRTPSSGAPKDSSWCWRA*GV*TVPRVFIGKDCIGGCSDLDSLQQKGELLTRLKQIGALQ*SQIS*EKFN,YLWMWSR*KKPS*PLPGNQMEVRLLCCTERLRGYLCLSTTSKTTGRLNSSRCSTSSRRTPSSGAPKDSSWCWRA*GV*TVPRVFIGKDCIGGCSDLDSLQQKGELLTRLKQIGALQ*SQIS*EKFN,YLWMWSR*KKPS*PLPGNQMEVRLLCCTERLRGYLCLSTTSKTTGRLNSSRCSTSSRRTPSSGAPKDSSWCWRA*GV*TVPRVFIGKDCIGGCSDLDSLQQKGELLTRLKQIGALQ*SQIS*EKFN,YLWMWSR*KKPS*PLPGNQMEVRLLCCTERLRGYLCLSTTSKTTGRLNSSRCSTSSRRTPSSGAPKDSSWCWRA*GV*TVPRVFIGKDCIGGCSDLDSLQQKGELLTRLKQIGALQ*SQIS*EKFN,,,, EIF3B:NM_001037283[1,13]-GLRX:NM_001118890[2,3];EIF3B:NM_003751[1,13]-GLRX:NM_001118890[2,3];EIF3B:NM_001037283[1,13]-GLRX:NM_001243658[2,3];EIF3B:NM_003751[1,13]-GLRX:NM_001243658[2,3];EIF3B:NM_001037283[1,13]-GLRX:NM_001243659[2,3];EIF3B:NM_003751[1,13]-GLRX:NM_001243659[2,3];EIF3B:NM_001037283[1,13]-GLRX:NM_002064[2,3];EIF3B:NM_003751[1,13]-GLRX:NM_002064[2,3];;;; geneB_transcripts=NM_001118890,NM_001243658,NM_001243659,NM_002064 ,,,,,,,,,,, 2,2,2,2,2,2,2,2,,,, MV4_11_RNAseq_1 PROKR2 chr20 5272768 - intergenic ANKRD28 chr3 15838167 - intron > 0 3 91 145 0.500 0.020 1 167 0.000 0.260 92 80 4 54 CTCAGAAGTATGCCATGTGATGCTACCTTAAAGTCAGAATAACCTGCATTATAGCTGGAATAAACTTTAAATTACTTTTAAAAAAAAAAAAAAAACCCAGCTGTGCTGTTCAGAGAATGTTTGTAAGTGTTGTACAGAAGAGGAGGAAAAACTACTTGTGCTCTTCCAACTGTGACTTTTATCACATAGCTTGGAATTTAGTGTTTTAAAAGATCGAATGAGGCG CTX 83.50 LQ 2 other 0,0 NM_144773,NM_144773 , , , , , , NM_001195098,NM_015199 , , , ,28 2700,3162 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001195098,NM_015199;geneb_utr_codons=13 , , MV4_11_RNAseq_1 GOLGA8T chr15 30440604 - intergenic RNASEH2A chr19 12923888 + coding > 1 3 283 83 0.870 0.000 83 28 0.010 0.000 284 283 708 2510 GAAAAATCTTTCAGTATTTCCATGACACATTCTGTTTACAATAATTCATAAACTGATAAAATTCATTCTAAGAAAACTTGGCAAATAAAACTTTGGACTGGAATTGGCATTTCTTTCTCTGCTTTTCGTTCCCACCATTTCTTTCTTTTATACTACAGTATTCATATTTTAAAATGTTTTAAATTATTTCAGAACATTAAGATAGCAGTTACATTTTTTAATAGTTATATTATTTTAAAATGACTAAGATAAAGTTTTAGAGAAACTATATTATGGATAGGGCTACCCCAATGATCCCAAGACAAAAGCGTGGTTGAAGGAGCACGTGGAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTTCAGC CTX 83.00 LQ 0 NLoss 0 NM_006397 213 tuple 638 900 geneA_no_transcript_IDs_found geneB_transcripts=NM_006397 MV4_11_RNAseq_1 TCEB2 chr16 2821943 - 3utr RTN4 chr2 55199947 - 3utr > 1 2 153 371 0.510 0.000 13 142 0.030 0.020 155 158 125 1089 CCTGTGAGGCCCTGTGCATCGAGCCGTTTTCCTGCCCGCCAGAGCTGCCCGATGTGATGAAGCCCCAGGACTCGGGAAGCAGTGCCAATGAACAAGCCGTGCAGTGAGGACCCCCAAGAGGCCCATTTCCCCCAATAAAAGAGATTTGGGAGTCTAAAAAAAAAAAAAAAAAAAGCCCTTTTCAGTTTGTGCACTGTGTATGGTCCGTGTAGATTGATGCAGATTTTCTGAAATGAAATGTTTGTTTAGACGAGATCATACCGGTAAAGCAGGAATGACAAAGCTTGCTTTTCTGGTATGTTCTAGGTGTATTGTGACTTTTACTGTTATATTAATTGCCAATATAAGTAAATATAGATTATATATGTATAGTGTTTCACAAAGCTTAGACCTTTACCTTCCAGCCACCCCACAGTGCTTGATATTTCAGAGTCAGTCATTGGTTATACATGTGTAGTTCCAAAGCACATAAGCTAGAAGAAGAAATATTTCTAGGAGCACTACCATCTGTTTTCAACATGAAATGCCA CTX 82.58 LQ 0 other ,,,,,,,,, NM_007108,NM_007108,NM_007108,NM_007108,NM_007108,NM_207013,NM_207013,NM_207013,NM_207013,NM_207013 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,353,353,353,353,353 ,,,,,,,,, ,,,,,,,,, NM_007008,NM_020532,NM_153828,NM_207520,NM_207521,NM_007008,NM_020532,NM_153828,NM_207520,NM_207521 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, 600,3579,1122,1179,2961,600,3579,1122,1179,2961 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_007008,NM_020532,NM_153828,NM_207520,NM_207521;geneb_utr_codons=13 ,,,,,,,,, ,,,,,,,,, MV4_11_RNAseq_1 WIPF1 chr2 175585579 + intron PABPC1,MIR7705 chr8 101715508 - 3utr > 2 10 299 365 0.670 0.000 82 55 0.400 0.000 300 297 26 20206 ATGCAAGTTAAAATGTTTCAGTGAACAAGTTTCAGCGGTTCAACTTTATAATAATTATAAATAAACCTGTTAAATTTTTCTGGACAATGCCAGCATTTGGATTTTTTTAAAACAAGTAAATTTCTTATTGATGGCAACTAAATGGTGTTTGTAGCATTTTTATCATACAGTAGATTCCATCCATTCACTATACTTTTCTAACTGAGTTGTCCTACATGCAAGTACATGTTTTTAATGTTGTCTGTCTTCTGTGCTGTTCCTGTAAGTTTGCTATTAAAATACATTAAAAAAAAAAAAAAAAAAACATTGCAAAATATAAAATAAATAAAAAAAGGAAAGGAAACTTTGAACCTTATGTACCGAGCAAATGCCAGGTCTAGCAAACATAATGCTAGTCCTAGATTACTTATTGATTTAAAAACAAAAAAACACAAAAAAATAGTAAAATATAAAAACAAATTAATGTTTTATAGACCCTGGGAAAAAGAATTTTCAGCAAAGTACAAAAATTTAAAGCATTCCTTTCTTTAATTTTGTAATTCTTTACTGTGGAATAGCTCAGAATGTCAGTTCTGTTTTAAGTAACAGAATTGATAACTGAGCAAGGAAACGTAATTTGGATTATAAAATTCTTGCTTTAATAAAAATTCCTTAAACAGTG CTX 82.00 LQ 0 other NM_002568 1911 geneB_no_inframe_contig_found geneB_transcripts=NM_002568;geneb_utr_codons=13 MV4_11_RNAseq_1 PSMB7 chr9 127119098 + coding STK10 chr5 171509498 - coding ? 0 4 81 143 0.000 0.000 1 164 0.000 0.060 81 75 3756 114 CCCTTTCTCACACCTGTACCGGCCAAGCCTGGTCCCCTTCTTGTTGGGCACTGTGTATGGGCGGAGAAAATCCATGTTCTTTGACACGGAATTAGAGAACCTGGAGCGTCAGCAAAAGCAGCAAGTGGAGAAGATGGAGCAAGACCATGCCGTGCGCCGCCGGGAGGAGGCCAGGCGGATCCGCCTGGAGCAGGATCGGGACTACACCAGGTTCCAAG CTX 82.00 LQ 1 Fusion unhandled orientation ? MV4_11_RNAseq_1 OSBPL2 chr20 60777809 - intron CALR,MIR6515 chr19 13054904 + 3utr > 1 7 189 146 0.000 0.510 93 34 0.060 0.270 190 181 78 1520 GGCATCTTGAGCCTCCCCTGCAAGAGCATCAAGATGAAAGCCAGGGATAATTAACGCCGTCAGGCCTGGGGCGACTCCACAAAATCCTTTGTGGCGGCCTGAGGCTGCCGTCTCTCCTCCAAGGGCTGGGGGTCCCCTTCTGATCATCCTTCTCTGCTTCTTTGTCCCCTCCACTTTTTTTTTTTTTTTTTTTTTTTTAAACTGGTATTTTATCTTTGATTCTCCTTCAGCCCTCACCCCTGGTTCTCATCTTTCTTGATCAACATCTTTTCTTGCCTCTGTCCCCTTCTCTCATCTCTTAGCTCCCCTCCAACCTGGGGGGCAGT CTX 79.57 LQ 0 other NM_015666 NM_004343 1254 geneB_no_inframe_contig_found geneB_transcripts=NM_004343;geneb_utr_codons=13 MV4_11_RNAseq_1 GOLGA6L17P,GOLGA6L9 chr15 83040949 - intron PABPC1,MIR7705 chr8 101715515 - 3utr > 7 0 127 75 0.800 0.640 216 0 0.090 0.000 128 114 687 20183 GTTCAGCAGGCTGATGAATAAGATCTAAGAGTTACCTGGCTACAGAAAGAAGATGCCAGATGACACTTAAGACCTACTTGTGATATTTAAATGATGCAATAAAAGACCTATTGATTATGGAAAAAAAACATTGCAAAATATAAAATAAATAAAAAAAGGAAAGGAAACTTTGAACCTTATGTACCGAG CTX 77.76 LQ 0 other NM_001291420 NM_002568 1911 geneB_no_inframe_contig_found geneB_transcripts=NM_002568;geneb_utr_codons=13 MV4_11_RNAseq_1 MORF4L1 chr15 79189570 - 3utr LSM7 chr19 2328465 - coding > 9 4 361 143 0.500 0.020 65 28 0.010 0.060 361 355 2827 3842 GCCACCATTCTTCAACAATTTGAGCCAAGATAAAATGCCTAAGTAACAACATGGATGACTTGCAAAGGATGGGCTCTTTACTTTAAGCACCATAAAAAAAAACAAAAGCACAAATGGATGAGTGTGTTCAGTTATATACACTGAATTGAACCTTTGGCACTAGGAATCAGAGCATTTTGTCATATAGCATTAACATGTATTATAAAAGTGCGTAGTGTCAAAGGAATAGAACCACCAGCATTCAAAAGCAGCTTTGTCAACTAGGCAATAAAACACTCTACAGCATATCCCTCTGTTGTCCATCATTGAAAACACTGGCAGCAATTTTGAAATGAAAAAAAAAAAGAAAGAAGAAAAAAGGGAGCCATCTTGGACTTGTCCAAGTACATCGACAAGACGATCCGGGTAAAGTTCCAGGGAGGCCGCGAAGTGGAATCCTGAAGGGCTTCGACCCACTCCTCAACCTTGTGCTGGACGGCACCATTGAGTACATGCGAGACCCTGAC CTX 77.70 LQ 0 NLoss ,,,, NM_001265603,NM_001265604,NM_001265605,NM_006791,NM_206839 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_016199,NM_016199,NM_016199,NM_016199,NM_016199 ,,,, ,,,, ,,,, 18,18,18,18,18 312,312,312,312,312 ,,,, ,,,, ,,,, ;;;; geneB_blat_issues=too_many_mismatches;geneB_anchor_fail_but_found_blat_hit=NM_016199 geneB_transcripts=NM_016199 ,,,, ,,,, MV4_11_RNAseq_1 UBE2Q2P2 chr15 82664407 - intron PABPC1,MIR7705 chr8 101715515 - 3utr > 6 0 126 75 0.800 0.640 215 0 0.670 0.000 127 114 73 20183 GTTCAGCAGGCTGATTAATAAGATCTAAGAGTTACCTGGCTACAGAAAGAAGATGCCAGATGACACTTAAGACCTACTTGTGATATTTAAATGATGCAATAAAAGACCTATTGATTATGGAAAAAAAACATTGCAAAATATAAAATAAATAAAAAAAGGAAAGGAAACTTTGAACCTTATGTACCGAG CTX 77.40 LQ 0 other NM_001164465 NM_002568 1911 geneB_no_inframe_contig_found geneB_transcripts=NM_002568;geneb_utr_codons=13 MV4_11_RNAseq_1 EIF5A chr17 7214971 + 3utr ZFAND6 chr15 80352041 + 5utr > 21 1 45 146 0.740 0.000 77 48 0.010 0.330 46 48 6449 82 GGCAGCTGTTGCAATAAAGGCCATGGCAAAATAACTGGCTCCCAGGATGGCGGTGGCGGAGCCGGAGCAAGCAGGGGTTCGGCGGCATTACCTGTACCCATTCACCGGCGGCTACCGGCGGCGGCGCGCAGCGTGTCAGGCGGAGAGACCCGCCGCCAGGAATGAATCTGAAGTCTGCTGCAGTAAAACACAGATC CTX 77.00 LQ 1 other 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,0,3,3,0 NM_001143760,NM_001143761,NM_001143762,NM_001970,NM_001143760,NM_001143761,NM_001143762,NM_001970,NM_001143760,NM_001143761,NM_001143762,NM_001970,NM_001143760,NM_001143761,NM_001143762,NM_001970,NM_001143760,NM_001143761,NM_001143762,NM_001970,,,,, ,,,,,,,,185,155,155,155,,,,,,,,,,,,, 5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,,,,, ,,,,,,,,tuple,tuple,tuple,tuple,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,9,9,9,9,,,,,,,,,,,,, ,,,,,,,,30,30,30,30,,,,,,,,,,,,, NM_001242911,NM_001242911,NM_001242911,NM_001242911,NM_001242912,NM_001242912,NM_001242912,NM_001242912,NM_001242917,NM_001242917,NM_001242917,NM_001242917,NM_001242918,NM_001242918,NM_001242918,NM_001242918,NM_019006,NM_019006,NM_019006,NM_019006,NM_001242911,NM_001242912,NM_001242917,NM_001242918,NM_019006 -42,-42,-42,-42,-68,-68,-68,-68,-57,-57,-57,-57,-42,-42,-42,-42,-96,-96,-96,-96,-42,-68,-57,-42,-96 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,,,,,,,,,,,,,,, 627,627,627,627,627,627,627,627,591,591,591,591,513,513,513,513,627,627,627,627,627,627,591,513,627 18,18,18,18,19,19,19,19,18,18,18,18,18,18,18,18,19,19,19,19,,,,, ,,,,,,,,55,55,55,55,,,,,,,,,,,,, QLLQ*RPWQNNWLPGWRWRSRSKQGFGGITCTHSPAATGGGAQRVRRRDPPPGMNLKSAAVKHR,QLLQ*RPWQNNWLPGWRWRSRSKQGFGGITCTHSPAATGGGAQRVRRRDPPPGMNLKSAAVKHR,QLLQ*RPWQNNWLPGWRWRSRSKQGFGGITCTHSPAATGGGAQRVRRRDPPPGMNLKSAAVKHR,QLLQ*RPWQNNWLPGWRWRSRSKQGFGGITCTHSPAATGGGAQRVRRRDPPPGMNLKSAAVKHR,GSCCNKGHGKITGSQDGGGGAGASRGSAALPVPIHRRLPAAARSVSGGETRRQE*I*SLLQ*NTD,GSCCNKGHGKITGSQDGGGGAGASRGSAALPVPIHRRLPAAARSVSGGETRRQE*I*SLLQ*NTD,GSCCNKGHGKITGSQDGGGGAGASRGSAALPVPIHRRLPAAARSVSGGETRRQE*I*SLLQ*NTD,GSCCNKGHGKITGSQDGGGGAGASRGSAALPVPIHRRLPAAARSVSGGETRRQE*I*SLLQ*NTD,AAVAIKAMAK*LAPRMAVAEPEQAGVRRHYLYPFTGGYRRRRAACQAERPAARNESEVCCSKTQI,AAVAIKAMAK*LAPRMAVAEPEQAGVRRHYLYPFTGGYRRRRAACQAERPAARNESEVCCSKTQI,AAVAIKAMAK*LAPRMAVAEPEQAGVRRHYLYPFTGGYRRRRAACQAERPAARNESEVCCSKTQI,AAVAIKAMAK*LAPRMAVAEPEQAGVRRHYLYPFTGGYRRRRAACQAERPAARNESEVCCSKTQI,QLLQ*RPWQNNWLPGWRWRSRSKQGFGGITCTHSPAATGGGAQRVRRRDPPPGMNLKSAAVKHR,QLLQ*RPWQNNWLPGWRWRSRSKQGFGGITCTHSPAATGGGAQRVRRRDPPPGMNLKSAAVKHR,QLLQ*RPWQNNWLPGWRWRSRSKQGFGGITCTHSPAATGGGAQRVRRRDPPPGMNLKSAAVKHR,QLLQ*RPWQNNWLPGWRWRSRSKQGFGGITCTHSPAATGGGAQRVRRRDPPPGMNLKSAAVKHR,GSCCNKGHGKITGSQDGGGGAGASRGSAALPVPIHRRLPAAARSVSGGETRRQE*I*SLLQ*NTD,GSCCNKGHGKITGSQDGGGGAGASRGSAALPVPIHRRLPAAARSVSGGETRRQE*I*SLLQ*NTD,GSCCNKGHGKITGSQDGGGGAGASRGSAALPVPIHRRLPAAARSVSGGETRRQE*I*SLLQ*NTD,GSCCNKGHGKITGSQDGGGGAGASRGSAALPVPIHRRLPAAARSVSGGETRRQE*I*SLLQ*NTD,,,,, EIF5A:NM_001143760[1,5]-ZFAND6:NM_001242911[1,6];EIF5A:NM_001143761[1,5]-ZFAND6:NM_001242911[1,6];EIF5A:NM_001143762[1,5]-ZFAND6:NM_001242911[1,6];EIF5A:NM_001970[1,5]-ZFAND6:NM_001242911[1,6];EIF5A:NM_001143760[1,5]-ZFAND6:NM_001242912[1,7];EIF5A:NM_001143761[1,5]-ZFAND6:NM_001242912[1,7];EIF5A:NM_001143762[1,5]-ZFAND6:NM_001242912[1,7];EIF5A:NM_001970[1,5]-ZFAND6:NM_001242912[1,7];EIF5A:NM_001143760[1,5]-ZFAND6:NM_001242917[1,7];EIF5A:NM_001143761[1,5]-ZFAND6:NM_001242917[1,7];EIF5A:NM_001143762[1,5]-ZFAND6:NM_001242917[1,7];EIF5A:NM_001970[1,5]-ZFAND6:NM_001242917[1,7];EIF5A:NM_001143760[1,5]-ZFAND6:NM_001242918[1,5];EIF5A:NM_001143761[1,5]-ZFAND6:NM_001242918[1,5];EIF5A:NM_001143762[1,5]-ZFAND6:NM_001242918[1,5];EIF5A:NM_001970[1,5]-ZFAND6:NM_001242918[1,5];EIF5A:NM_001143760[1,5]-ZFAND6:NM_019006[1,7];EIF5A:NM_001143761[1,5]-ZFAND6:NM_019006[1,7];EIF5A:NM_001143762[1,5]-ZFAND6:NM_019006[1,7];EIF5A:NM_001970[1,5]-ZFAND6:NM_019006[1,7];;;;; geneB_transcripts=NM_001242911,NM_001242912,NM_001242917,NM_001242918,NM_019006;geneb_utr_codons=13;not_inframe_due_to_intermediate_stop_codon ,,,,,,,,*LAPRMAV,*LAPRMAV,*LAPRMAV,*LAPRMAV,,,,,,,,,,,,, 2,2,2,2,0,0,0,0,1,1,1,1,2,2,2,2,0,0,0,0,,,,, MV4_11_RNAseq_1 NDUFB9 chr8 125551393 - 5utr VLDLR chr9 2650385 + coding > 11 0 393 105 0.030 0.000 77 0 0.050 0.000 394 407 1340 167 TGGCAAAGTAATCAGGATACATTGCCTTCTCAGCAGGATGCTAGTCATCTAAGCACCATTCTGGGACCTTGTAGCAATCGTATCTCTCATAGGAGGTGCCCCCAGGAGAGTCAGGGAAGATGTATGGCTGTGGATGCTGACGGTACCAGAATTCTTCCTCGGCCTCCTTCAGCAGCTGGGTGGCCTTCGCCATATCCTTTTCATTCTTATGTTCTTCAAACCGGGCTCTCATCAAACAAGCAAAGTATCGGTATTTGTCTCTCTGGACGCACCACGACTCGAGGTGGCGTAGCGCCCGCTTATAAAGCCGCAACACCTTTTGCTGATGGGTCAGGTAGGGTCCCGACGCCAAGAACGCCATTACGGCGCTGACCTTCCCCGGCCGCGCGGAGAGCCAGGAAACTGCAAGACATGGAGAATGGAGGATGTGAATACCTATGCCTGCCAGCACCACAGATTAATGATCACTCTCCAAAATATACCTGTTCCTGTCCCAGTGGGTACAATGTAG CTX 77.00 LQ 0 NLoss 0,0,0,0,0,0,3,3 NM_001278645,NM_001278646,NM_005005,NM_001278645,NM_001278646,NM_005005,, ,,,,,,, 1,1,1,1,1,1,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, NM_001018056,NM_001018056,NM_001018056,NM_003383,NM_003383,NM_003383,NM_001018056,NM_003383 707,707,707,707,707,707,707,707 15,15,15,15,15,15,, blat,blat,blat,blat,blat,blat,blat,blat 2120,2120,2120,2120,2120,2120,2120,2120 2538,2538,2538,2622,2622,2622,2538,2622 136,136,136,136,136,136,, ,,,,,,, WQSNQDTLPSQQDASHLSTILGPCSNRISHRRCPQESQGRCMAVDADGTRILPRPPSAAGWPSPYPFHSYVLQTGLSSNKQSIGICLSGRTTTRGGVAPAYKAATPFADGSGRVPTPRTPLRR*PSPAARRARKLQDMENGGCEYLCLPAPQINDHSPKYTCSCPSGYNV,WQSNQDTLPSQQDASHLSTILGPCSNRISHRRCPQESQGRCMAVDADGTRILPRPPSAAGWPSPYPFHSYVLQTGLSSNKQSIGICLSGRTTTRGGVAPAYKAATPFADGSGRVPTPRTPLRR*PSPAARRARKLQDMENGGCEYLCLPAPQINDHSPKYTCSCPSGYNV,WQSNQDTLPSQQDASHLSTILGPCSNRISHRRCPQESQGRCMAVDADGTRILPRPPSAAGWPSPYPFHSYVLQTGLSSNKQSIGICLSGRTTTRGGVAPAYKAATPFADGSGRVPTPRTPLRR*PSPAARRARKLQDMENGGCEYLCLPAPQINDHSPKYTCSCPSGYNV,WQSNQDTLPSQQDASHLSTILGPCSNRISHRRCPQESQGRCMAVDADGTRILPRPPSAAGWPSPYPFHSYVLQTGLSSNKQSIGICLSGRTTTRGGVAPAYKAATPFADGSGRVPTPRTPLRR*PSPAARRARKLQDMENGGCEYLCLPAPQINDHSPKYTCSCPSGYNV,WQSNQDTLPSQQDASHLSTILGPCSNRISHRRCPQESQGRCMAVDADGTRILPRPPSAAGWPSPYPFHSYVLQTGLSSNKQSIGICLSGRTTTRGGVAPAYKAATPFADGSGRVPTPRTPLRR*PSPAARRARKLQDMENGGCEYLCLPAPQINDHSPKYTCSCPSGYNV,WQSNQDTLPSQQDASHLSTILGPCSNRISHRRCPQESQGRCMAVDADGTRILPRPPSAAGWPSPYPFHSYVLQTGLSSNKQSIGICLSGRTTTRGGVAPAYKAATPFADGSGRVPTPRTPLRR*PSPAARRARKLQDMENGGCEYLCLPAPQINDHSPKYTCSCPSGYNV,, NDUFB9:NM_001278645[1,1]-VLDLR:NM_001018056[15,18];NDUFB9:NM_001278646[1,1]-VLDLR:NM_001018056[15,18];NDUFB9:NM_005005[1,1]-VLDLR:NM_001018056[15,18];NDUFB9:NM_001278645[1,1]-VLDLR:NM_003383[15,19];NDUFB9:NM_001278646[1,1]-VLDLR:NM_003383[15,19];NDUFB9:NM_005005[1,1]-VLDLR:NM_003383[15,19];; geneB_transcripts=NM_001018056,NM_003383 ,,,,,,, 0,0,0,0,0,0,, MV4_11_RNAseq_1 DDX43 chr6 74083036 + intron MLX chr17 40721222 + coding > 6 2 330 212 0.510 0.500 36 120 1.000 0.020 330 343 36 621 AACAGATTCAGAGAGGAAAACACGTCGAAATCTCCAGATAGTGGTGACATTTTCAGCTTGATATGGTAACATGATCGTGACCTTCAGACAGCATAAATATGTGTGCCATCTCATGTGCAATTCCTTATAGACCCAGCTTGGTTCTTCTCCAATGTCTCCTTTTGGAGTTGTACCTGATTTTATTTCCAGTTTTCATCCGAATCCACTGGGGAATGGGACGATTTTGCTTTTGTTTCTTGGCCAGGAATCGCTTAATCCTGAAAGTCTTGTGAGAAGACATGGCGAGCAGCGGAGTCAAGAACACACCACGATGGCGGAGAAAGGAAGAGGAGGGAAGCCATCAAGAGAGGCTATGATGACCTTCAGACCATCGTCCCCACTTGCCAGCAGCAGGACTTCTCCATTGGCTCCCAAAAGCTCAGCAAAGCCATCGTTCTACAAAAGACCATTGACTACATTCAGTTTTTGCACAAGGAGAAGAAAAAGCAGGAGGAGGAGGTGTCCACGTTACGCAAGGATGTCACCGCCCTAAAGATCATGAAAGTGAACTATGAG CTX 76.80 LQ 0 NLoss 0,0,0 ,, ,, ,, ,, ,, ,, ,, NM_170607,NM_198204,NM_198205 147,93,63 ,, tuple,tuple,tuple 439,277,187 897,735,645 ,, ,, ,, ;; geneA_no_transcript_IDs_found geneB_transcripts=NM_170607,NM_198204,NM_198205 ,, ,, MV4_11_RNAseq_1 FAU chr11 64888110 - 3utr SPICE1 chr3 113214930 - intron > 2 1 471 85 0.000 0.650 27 65 0.830 0.120 471 471 2033 32 CGCCGTTCAGTCGCCAATATGCAGCTCTTTGTCCGCGCCCAGGAGCTACACACCTTCGAGGTGACCGGCCAGGAAACGGTCGCCCAGATCAAGGCTCATGTAGCCTCACTGGAGGGCATTGCCCCGGAAGATCAAGTCGTGCTCCTGGCAGGCGCGCCCCTGGAGGATGAGGCCACTCTGGGCCAGTGCGGGGTGGAGGCCCTGACTACCCTGGAAGTAGCAGGCCGCATGCTTGGAGGTAAAGTCCATGGTTCCCTGGCCCGTGCTGGAAAAGTGAGAGGTCAGACTCCTAAGGTGGCCAAACAGGAGAAGAAGAAGAAGAAGACAGGTCGGGCTAAGCGGCGGATGCAGTACAACCGGCGCTTTGTCAACGTTGTGCCCACCTTTGGCAAGAAGAAGGGCCCCAATGCCAACTCTTAAGTCTTTTGTAATTCTGGCTTTCTCTAATAAAAAAGCCACTTAGTTCAGTCAAAAAAAAAAAAAAAAAAAAAAAAGTTGTAAAAAAAAAATCTCATAATGTTTTAAGAAAGTTTAAAAATTTGTGTTAGGCCACATT CTX 74.45 LQ 0 other NM_001997 NM_144718 292 2568 geneB_no_inframe_contig_found geneB_transcripts=NM_144718 MV4_11_RNAseq_1 CYBA chr16 88709703 - 3utr SUB1 chr5 32601113 + coding > 18 0 116 89 0.040 0.660 218 0 0.180 0.000 136 148 7213 16761 TCGAGGGCGAGGGTGGGGCGGCGGCGAGGGGACCCCAGGCAGGTCCCCAGGCCAACCTCTTCCCGGTGGCCGACGAGGTCGTGTGACCTCGCCCCGGACCTGCCCTCCCACCAGGTGCACCCACCTGCAATAAACGCAGCGAAGCCGGGTATTTCTTTAAATCCAGAACAATGGAGCCAGCTGAAGGAACAGATTTCTGACATTGATGATGCAGTAAGAAAACTGTAAAATTCGAG CTX 74.12 LQ 0 NLoss 0,0 NM_000101, , 6, , , , , NM_006713,NM_006713 103,103 5, tuple,tuple 307,307 384,384 50, , SRARVGRRRGDPRQVPRPTSSRWPTRSCDLAPDLPSHQVHPPAINAAKPGISLNPEQWSQLKEQISDIDDAVRKL*NS, CYBA:NM_000101[1,6]-SUB1:NM_006713[5,5]; geneB_transcripts=NM_006713 , 0, MV4_11_RNAseq_1 PTGES3 chr12 57057382 - 3utr CHD9 chr16 53360783 + 3utr > 2 1 304 147 0.500 0.000 33 82 0.010 0.020 304 313 3629 258 CTAACTTAGATGGTTTTTGAAGCCTATACAATTGGTATTGTTTGACCCTTAAGCTTTTACATCTCTTAGCATGGAGGACGAAGAAAGCTGTACATTGTTGCTTGAGAGTCTGTACATTTAGTCCAGATTTGTATTTGCACTGTCAGTATGGCAAATGAGTGAAAAATGTTTAATACACTATTGGATTTTTTATTTCCTTTTTTTGATTCAGCTTATACCCGGGCTGAAAACCTCAATTTATGTTCATGACAGTGGGGATTTTTTTAAATGTCTACATTCTTTCTAATAAACTGTTGGAAGACTTAAACTAAAAAAAAAAAAAAAAAGAAAAAAAAATCTGTAGATCTTGTCACTAAAATCTAATTTATATCAAATTTATGAGAGAAAGTATTTTCCTAATTATGGTCAAATAAATTTGGTTAACATCCTAGTGATTCTCTTTCTATATAATAAGGCAATT CTX 74.00 LQ 0 other ,,,,, NM_001282601,NM_001282602,NM_001282603,NM_001282604,NM_001282605,NM_006601 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_025134,NM_025134,NM_025134,NM_025134,NM_025134,NM_025134 ,,,,, ,,,,, ,,,,, ,,,,, 8646,8646,8646,8646,8646,8646 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_025134;geneb_utr_codons=13 ,,,,, ,,,,, MV4_11_RNAseq_1 LPAR1 chr9 113679202 + intron PCNP chr3 101295283 + intron ? 0 3 86 78 0.000 0.800 1 146 0.000 0.030 86 73 9 485 GGAAAAAATAACTGTAACAATATGCATGGAAAACTATATAATTCATTCTTTTGGATAGGCCAAAATAAAGTCTTTTTTTTTTTTTTTATATAAACTATTTATTAACAGACAAGGCCTACAGACTTATTTCTTCTTGGACACACCCACGGTG CTX 73.00 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 CCM2 chr7 45115435 + coding EIF3CL,EIF3C,MIR6862-1,MIR6862-2 chr16 28391201 - coding > 4 0 143 144 0.000 0.500 146 0 0.050 0.000 144 138 237 1291 GTACCGCAATGGGGCCTCTATCCACGAGTTCTGCATCAACCTGCGGCAGCTCTACGGGGACAGCCGCAAGTTCCTGCTGCTTGGTCTGAGGCCCTTCATCCCTGAGAAGGACAGCCAGCACTTCGAGAACTTCCTGGAGACCAGAAGGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCTG CTX 73.00 LQ 1 Fusion 0,0,0,0,3 NM_001029835,NM_001167934,NM_001167935,NM_031443, ,,,, 10,9,8,10, ,,,, 1177,940,841,1114, ,,,, ,,,, NM_001099661,NM_001099661,NM_001099661,NM_001099661,NM_001099661 888,888,888,888,888 21,21,21,21, tuple,tuple,tuple,tuple,tuple 2663,2663,2663,2663,2663 2745,2745,2745,2745,2745 46,46,46,46, ,,,, VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL, CCM2:NM_001029835[1,10]-EIF3CL:NM_001099661[21,21];CCM2:NM_001167934[1,9]-EIF3CL:NM_001099661[21,21];CCM2:NM_001167935[1,8]-EIF3CL:NM_001099661[21,21];CCM2:NM_031443[1,10]-EIF3CL:NM_001099661[21,21]; geneB_CDS_mapping_exception=NM_001037808:-5;geneB_breakpoint_not_mapped_to_CDS=NM_001037808;geneB_CDS_mapping_exception=NM_001099661:-5;geneB_CDS_mapping_exception=NM_001199142:-5;geneB_breakpoint_not_mapped_to_CDS=NM_001199142;geneB_CDS_mapping_exception=NM_001267574:-5;geneB_breakpoint_not_mapped_to_CDS=NM_001267574;geneB_CDS_mapping_exception=NM_001286478:-5;geneB_breakpoint_not_mapped_to_CDS=NM_001286478;geneB_CDS_mapping_exception=NM_003752:-5;geneB_breakpoint_not_mapped_to_CDS=NM_003752 geneB_transcripts=NM_001037808,NM_001099661,NM_001199142,NM_001267574,NM_001286478,NM_003752;geneB_transcript_strand_disagree=NM_001037808;geneB_transcript_strand_disagree=NM_001199142;geneB_transcript_strand_disagree=NM_001267574;geneB_transcript_strand_disagree=NM_001286478;geneB_transcript_strand_disagree=NM_003752 ,,,, 0,0,0,0, MV4_11_RNAseq_1 CCM2 chr7 45115435 + coding EIF3C,EIF3CL,MIR6862-1,MIR6862-2 chr16 28746752 + coding > 4 0 143 144 0.000 0.500 146 0 0.050 0.000 144 138 237 1304 GTACCGCAATGGGGCCTCTATCCACGAGTTCTGCATCAACCTGCGGCAGCTCTACGGGGACAGCCGCAAGTTCCTGCTGCTTGGTCTGAGGCCCTTCATCCCTGAGAAGGACAGCCAGCACTTCGAGAACTTCCTGGAGACCAGAAGGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCTG CTX 73.00 LQ 1 Fusion 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,3,3,3,3 NM_001029835,NM_001167934,NM_001167935,NM_031443,NM_001029835,NM_001167934,NM_001167935,NM_031443,NM_001029835,NM_001167934,NM_001167935,NM_031443,NM_001029835,NM_001167934,NM_001167935,NM_031443,NM_001029835,NM_001167934,NM_001167935,NM_031443,,,,, ,,,,,,,,,,,,,,,,,,,,,,,, 10,9,8,10,10,9,8,10,10,9,8,10,10,9,8,10,10,9,8,10,,,,, ,,,,,,,,,,,,,,,,,,,,,,,, 1177,940,841,1114,1177,940,841,1114,1177,940,841,1114,1177,940,841,1114,1177,940,841,1114,,,,, ,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,, NM_001037808,NM_001037808,NM_001037808,NM_001037808,NM_001199142,NM_001199142,NM_001199142,NM_001199142,NM_001267574,NM_001267574,NM_001267574,NM_001267574,NM_001286478,NM_001286478,NM_001286478,NM_001286478,NM_003752,NM_003752,NM_003752,NM_003752,NM_001037808,NM_001199142,NM_001267574,NM_001286478,NM_003752 887,887,887,887,887,887,887,887,887,887,887,887,877,877,877,877,887,887,887,887,887,887,887,877,887 21,21,21,21,21,21,21,21,20,20,20,20,21,21,21,21,21,21,21,21,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 2660,2660,2660,2660,2660,2660,2660,2660,2660,2660,2660,2660,2630,2630,2630,2630,2660,2660,2660,2660,2660,2660,2660,2630,2660 2742,2742,2742,2742,2742,2742,2742,2742,2742,2742,2742,2742,2712,2712,2712,2712,2742,2742,2742,2742,2742,2742,2742,2712,2742 46,46,46,46,46,46,46,46,46,46,46,46,46,46,46,46,46,46,46,46,,,,, ,,,,,,,,,,,,,,,,,,,,,,,, VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,,,,, CCM2:NM_001029835[1,10]-EIF3C:NM_001037808[21,21];CCM2:NM_001167934[1,9]-EIF3C:NM_001037808[21,21];CCM2:NM_001167935[1,8]-EIF3C:NM_001037808[21,21];CCM2:NM_031443[1,10]-EIF3C:NM_001037808[21,21];CCM2:NM_001029835[1,10]-EIF3C:NM_001199142[21,21];CCM2:NM_001167934[1,9]-EIF3C:NM_001199142[21,21];CCM2:NM_001167935[1,8]-EIF3C:NM_001199142[21,21];CCM2:NM_031443[1,10]-EIF3C:NM_001199142[21,21];CCM2:NM_001029835[1,10]-EIF3C:NM_001267574[20,20];CCM2:NM_001167934[1,9]-EIF3C:NM_001267574[20,20];CCM2:NM_001167935[1,8]-EIF3C:NM_001267574[20,20];CCM2:NM_031443[1,10]-EIF3C:NM_001267574[20,20];CCM2:NM_001029835[1,10]-EIF3C:NM_001286478[21,21];CCM2:NM_001167934[1,9]-EIF3C:NM_001286478[21,21];CCM2:NM_001167935[1,8]-EIF3C:NM_001286478[21,21];CCM2:NM_031443[1,10]-EIF3C:NM_001286478[21,21];CCM2:NM_001029835[1,10]-EIF3C:NM_003752[21,21];CCM2:NM_001167934[1,9]-EIF3C:NM_003752[21,21];CCM2:NM_001167935[1,8]-EIF3C:NM_003752[21,21];CCM2:NM_031443[1,10]-EIF3C:NM_003752[21,21];;;;; geneB_CDS_mapping_exception=NM_001037808:-5;geneB_CDS_mapping_exception=NM_001099661:-5;geneB_breakpoint_not_mapped_to_CDS=NM_001099661;geneB_CDS_mapping_exception=NM_001199142:-5;geneB_CDS_mapping_exception=NM_001267574:-5;geneB_CDS_mapping_exception=NM_001286478:-5;geneB_CDS_mapping_exception=NM_003752:-5 geneB_transcripts=NM_001037808,NM_001099661,NM_001199142,NM_001267574,NM_001286478,NM_003752;geneB_transcript_strand_disagree=NM_001099661 ,,,,,,,,,,,,,,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,,,,, MV4_11_RNAseq_1 TSPAN9 chr12 3320759 - intron PITX1 chr5 134364263 - 3utr > 5 20 116 136 0.890 0.000 35 333 0.810 0.090 119 113 51 1172 AAAAGCAAGGCTAACAAAAGGATGTTCCTTCAGGAGGAAGCAGCACTAAAAGCACTCTGAGTCAAGATGAGTGGGAAACCATCTCAATAAACACATTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAAAAAGACGTCGGAGAAAAGTGCCGCGAAAAAAAGGATGAGTTGCAATTTCTCTCGGGATGGGGCGGGGGGTGGGTGTGTGTTCCCCCGGGGCCCGGAGGCCCCCTCCGCGGGGGGCAC CTX 71.63 LQ 0 other , NM_001168320,NM_006675 , , , , , , NM_002653,NM_002653 , , , , 945,945 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_002653;geneb_utr_codons=13 , , MV4_11_RNAseq_1 TAX1BP1 chr7 27868484 - 3utr C11orf57 chr11 111955527 + 3utr ? 4 1 223 109 0.000 0.000 42 99 0.050 0.040 224 216 719 257 CTAGGGAATAAATAAAGATACGAACACACAAGAACTTTTTTTTAAAGCAGGTAAGATTAACAGAGATTAAAATTTATTGATAAGCCAAAGACTGACCCTGATCCTAGTAACACCAAACTCAAAGTAGCTCCTGGTCAGAAAGTGCAGTAAAGGGTGCATGAAAGCATCCGCTCTATGGTCTCCTCAGTGGTCTATTTTAGGTGTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTGGTCATGTATAAGCAATAAAGCTGTTTTTTTTTTTTTATTTTTTTTAACCCCAAATTTTTTTTTTTTCCTTTGGCTTTGATGGTTCTTCCAACCCC CTX 70.50 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 FAM45B chrX 129630733 - 5utr SNRNP40 chr1 31732618 - 3utr ? 4 0 321 77 0.500 0.000 140 1 0.020 0.000 322 313 665 815 GCCTTTCTCTGGTTTTGGCCCCTGTAGGAAGTTAATCTCATATTCCCTTAGCAATAATATAAGGTCACTGTTTCAGTCCTACACACTTTTATATTCAATGGGCTTCTTAGTTTATCACATAAGGACTGGCACTTTTTTCAAAAGAATATTGCTAACAGGGTTAAATGAGTGCTAATGGCTGAACGTTTGCCAAATGCTTACTTCTGCGATAGTATAAATATGGATTATTAAAGTTGTCTACTCAAGTATAAAATATATGCAAAACTCTCATAGGCAAAATGTTCAAAGGCCGGGAAAAACCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAACTGGCTTGTATGATATTTTCTTTCTGTATTTCTCTATATCATTTTGTATTAAAAGCC CTX 70.00 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 DDX21 chr10 70743473 - 3utr PLCB3 chr11 64035102 + 3utr ? 1 2 210 200 0.000 0.560 9 136 0.010 0.140 210 209 1136 67 CTATACTGTGGCTTTAGGAACTAGGCCACTGACTACCTAAAAACCCCAGCTTGCCCACTTGAAGTTAACCTCTAGAAACATTAGTGATCTGTGAAGTTTTCACCATTAAAACAATGCTTTATCATCCAAATCATACTTGTTCTTCTCTTTGCTTTCCAGTTATGAATTTGTTACCTTTTTGCATTTGATTATTTCCAGTGGTTTGGTTCTTTTTTTTTTTTTAACTTTTTATCTAGAAATTTTATTTTTTTAAACCCGGGGCAAGTACCTCAGCTAACTCCCTTCATCCTCCTGGGGCCCCTCCTTCCTGCCCTCAGTCTTAGGTTAGGGCCTTGGTCAGGGCTTTGCTCCCTGTGACACCCACACCCTCGAGCTAGCAGCGTCTCCTCCCTTCCCCGGGAGAGCTGGC CTX 69.98 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 NT5M chr17 17286666 - intergenic DAB2 chr5 39372745 - 3utr > 0 3 90 183 0.480 0.000 0 134 0.360 1.000 163 148 686 8 AAGGAAGCCGCAGAAAAGGATGTTGAAAAGAAAAAATAAAGCCCTCCTGGGGACTTGGAATCAGTCGGCAGTCAAAAAGAGCCAAGGAAGCCGCAGAACAGGATGTTGAAAAGAAAAAATAAAGCCCTCCTGGGGACTTGGAATCAAAAAAAAAAAAAAAAAATCTAATGATTCACAGACAGATCTGGAGCCTCTCTTCATTCTCAGTAATTGCTAGTCCCAAGAACTAGAATTGCAAATGGGCACAACCTATATCCTTCCTGTGGAAGAGGAGGCCACTCTCTTGAGCTGAAGTTCCAGAAGAGCAGTTAATGTTCAAGAGAAATTGAAC CTX 69.68 LQ 0 other 0,0 NM_020201,NM_020201 , , , , , , NM_001244871,NM_001343 , , , , 2250,2313 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001244871,NM_001343;geneb_utr_codons=13 , , MV4_11_RNAseq_1 ACTR3B chr7 152522207 + coding NA chr7 152627780 + intergenic > 6 6 65 131 0.000 0.000 692 208 0.130 0.860 65 65 59 6 CTCAGATGTTGTTGATGAAGTAATACAGAACTGCCCCATCGATGTGCGGCGCCCGCTGTATAAGCATCCAGACATGTATTAGTCTGTTCTTGCACTGTCATAAAGAAATACCTGAGACTGGAAGTGCCTTTGGGAGGAGAGGAGGCAACCGCAGTCCCTGCTGTGCAGAGGGCAGTAAGAAAATCGTTTGGTGGG DEL 69.34 LQ 0 CLoss , NM_001040135,NM_020445 , , , 951,951 , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 RNF170,MIR4469 chr8 42710390 + 3utr LRRC75A-AS1,SNORD49B chr17 16344891 + 5utr ? 7 83 251 137 0.000 0.900 245 112 0.130 0.040 251 250 140 16195 TTTCTTTTGTCAAATGTAAATACCGTTCCCAGTACCTTCCTATTGGCTTGATGCTCAAAGACACGAAGATTCACCTTCCTCAGAAATGCATCAGGCTACTCTGTGTTTGCAGCATCGCCCAGGTTCCTAAAACAATCTTCCCTTTACAAATTACTTTTATATCTACTACGAAAGGATGAGCTCTTGTTTAAATGTCTAACTGTGAACATCAAGTGTGCTGACTGGAGATAAATGTTTTTCATCTTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTGTATTGCCCAGGCTGGAGTGTGGTGGCACAATCACAGCTCATTGCATCCTCAATCACCCAGGCCTAAGAAATCCTTCCACCTTTTAGCCTGGACTACCGCTCACAGCACACC CTX 68.25 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 XRCC6 chr22 42049610 + coding PTPRD chr9 9442253 - intron > 0 4 251 143 0.660 0.910 0 199 0.000 0.250 262 264 5963 98 ACCAAGAGGGCTCAGATCTATGGGAGTCGTCAGATTATACTGGAGAAAGAGGAAACAGAAGAGCTAAAACGGTTTGATGATCCAGGTTTGATGCTCATGGGTTTCAAGCCGTTGGTACTGCTGAAGAAACACCATTACCTGAGGCCCTCCCTGTTCGTGTACCCAGAGGAGTCGCTGGTGATTGGGAGCTCAACCCTGTTCAGTGCTCTGCTCATCAAGTGTCTGGAGAAGGAGGTTGCAGCATTGTGCAGATACACACCCCCCCCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAGTGCGGACACCCGATCGGCATAGCGCACTACAGCCCAGAACTCCTGGACTCAAGCGATCCTCCAG CTX 67.66 LQ 2 CLoss ,,, NM_001288976,NM_001288977,NM_001288978,NM_001469 ,,, ,,, ,,, 1207,1084,1057,1207 ,,, ,,, NM_002839,NM_002839,NM_002839,NM_002839 ,,, ,,, ,,, ,,, 5739,5739,5739,5739 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_002839;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 NUTM2F chr9 97109754 + intron CANX chr5 179157837 + 3utr > 3 0 123 74 0.920 0.000 111 1 0.180 0.000 124 128 32 3560 CTTCCTCACCATCACCTTCTTCTTCCTCCTCCTCTTCCTCCCCACCTTCTTCCTCTTCTTCGTCTACCTCATTGTCAGCCTCCTGCTCCCCATTTTCCTCATTAGCATTCCCGTTAGCAGGGGCGTCTCCTCCATTTTCTTATCCACAAAGTACTCCTCACTTTTCAATTTGTCATGTTACTAAATGGTGTTACATTAAAG CTX 67.32 LQ 0 other , , , , , , , , NM_001024649,NM_001746 , , , , 1779,1779 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001024649,NM_001746;geneb_utr_codons=13 , , MV4_11_RNAseq_1 RAB3GAP2 chr1 220428045 - intron LSM7 chr19 2328450 - coding > 4 0 181 305 0.670 0.000 67 0 0.220 0.000 182 175 51 5949 TTTTGTCATATAGCATTAACATGTATTATAAAAGTGCGTAGTGTCAAAGGAATAGAACCACCAGCATTCAAAAGCAGCTTTGTCAACTAGGCAATAAAACACTCTACAGCATATCCCTCTGTTGTCCATCATTGAAAACACTGGCAGCAATTTTGAAATGAAAAAAAAAAAAGAAAGAAGAAAAAAGGAGAGCATCTTGGACTTGTCCAAGTACATCGACAAGACGATCCGGGTAAAGTTCCAGGGAGGCCGCGAAGCCAGTGGAATCCTGAAGGGCTTCGACCCACTCCTCAACCTTGTGCTGGACGGCACCATTGAGTACATGCGAGACCCTGACGACCAGTACAAGCTCACGGAGGACACCCGGCAGCTGGGCCTCGTGGTGTGCCGGGGCACGTCCGTGGTGCTAATCTGCCCGCAGGACGGCATGGAGGCCATCCCCAACCCCTTCATCCAGCAGCAGGACGCCTAGCCTGGCCG CTX 67.00 LQ 0 NLoss 0,3 NM_012414, , 1, , 115, , , NM_016199,NM_016199 11,11 2, tuple,tuple 33,33 312,312 63, , FVI*H*HVL*KCVVSKE*NHQHSKAALSTRQ*NTLQHIPLLSIIENTGSNFEMKKKKERRKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA*PG, RAB3GAP2:NM_012414[1,1]-LSM7:NM_016199[2,4]; geneB_transcripts=NM_016199 , 1, MV4_11_RNAseq_1 MIR2114 chrX 149399914 - intergenic PTPRD chr9 9442253 - intron > 0 4 131 143 0.660 0.910 0 195 0.000 0.250 135 137 7 98 AACACCATTACCTGAGGCCCTCCCTGTTCGTGTACCCAGAGGAGTCGCTGGTGATTGTGAGCTCAACCCTGTTCAGTGCTCTGCTCATCAAGTGTCTGGAGAAGGAGGTTGCAGCATTGTGCAGATACACACCCCCCCCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAGTGCGGACACCCGATCGGCATAGCGCACTACAGCCCAGAACTCCTGGACTCAAGCGATCCTCCAG CTX 66.30 LQ 2 other NM_002839 5739 geneB_no_inframe_contig_found geneB_transcripts=NM_002839;geneb_utr_codons=13 MV4_11_RNAseq_1 STT3B chr3 31674558 - coding HNRNPH3 chr10 70100933 + coding ? 0 3 140 240 0.000 0.000 0 131 0.000 0.010 145 150 1670 1124 CGATCTCTTGCCTTTCTTAAAAACCAGCTTATTTTTAATGTAGCCACGCTTCCTTTTGGTAGTCTTCTTTGACAAATACTTCTGTTTTGGGAAAATGTTGGTGACTCGAGGTTTGTGATCTAATGTCTCCCTGTTATCAGGTGCTAATATCTTCTCACCACTAAATCCAATACGAGTTCATATTGATATTGGAGCTGATGGCAGAGCCACAGGAGAAGCAGATGTAGAGTTTGTGACACATGAAGATGCAGTAGCTGCCATGTCTAAAGATAAAAATAACATGCAACATCGATATATTGAACTCTTCTTGAATTCTACTCCTGGAGGCGGCTCTGGCATGGGAGGTTCTGGAATGGGAGGCTACGGAAGAGATGGAATGGATAATCAGGG CTX 65.50 LQ 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 RNF135 chr17 29361537 + intergenic FAM73B chr9 131834147 + 3utr > 5 0 213 73 0.920 0.000 175 0 0.450 0.000 214 210 429 88 ATTTATTATATGGTTGTTACACTCGGCCACAAATAAACACAGAAATAGTCCAGAATGTCACAGGTCCAGGGCAGAGGACCAACATGGGCATTTTGTTTATGAGCAAGGTGGGTCTCAGAGGTGATCGGCGATCAGAGGGCGATGAAGTTCTAGATCCATTGAGACAAGCTCTAGACAGTAGCATGCAGTCCCACAACTTGTACCAGCATCCCCAGCCTGACATCCTGTTCTTTTGCACTTACCCTGTGCTGTGAATGTAACAGTGGGCCTTGGCCCCGCCCAC CTX 64.38 LQ 0 other 0 NM_001184992 NM_032809 1782 geneB_no_inframe_contig_found geneB_transcripts=NM_032809;geneb_utr_codons=13 MV4_11_RNAseq_1 NA chr13 82264380 - intergenic CHCHD3 chr7 132720267 - intron > 3 0 87 115 0.890 0.490 126 0 0.060 0.000 88 90 652 1467 GCTTGCCCGTAGCTGACTCAGCTTCCTCATCTTCATCTCCATCCTCTTCCTCACCATCACCTTCTTCTTCCTCCTCCTCTTCCTCCCCTCGAATTCTGGGGCTGCTGGATGCTTACTTGAAGACGAGGACTTTTCTGGTGGGCGAACGAGGGACATTGGCGGACATCACAGGGGTCTGCACCCTGTTTTGGCTCGATAAGCAGGTTCTAGGTCCTTCGTTCCGCCAGTGCTTTCCCA CTX 64.26 LQ 0 other NM_017812 170 684 geneB_no_inframe_contig_found geneB_transcripts=NM_017812 MV4_11_RNAseq_1 E2F4 chr16 67229791 + coding PPM1H chr12 63359571 + intron > 3 0 236 139 0.000 0.660 186 0 0.050 0.010 237 231 576 251 CTCTGCCCAAGCCTGCCCTAGCCCAGTCCCAGGAAGCCTCACGTCCAAATAGTCCTCAGCTCACTCCCACTGCTGTCCCTGGCAGTGCAGAAGTCCAGGGAATGGCTGGCCCAGCAGCTGAGATCACAGTGAGTGGCGGCCCTGGGACTGATAGCAAGGACAGTGGTGAGCTCAGTTCACTCCCACTGGGCCCAACAACACTGGACACCCGGCCACTGCAGTCTTCTGCCCTGCTGCTGCTAAAGTTCCAGCAAAAAAGATCACCGCCGCGAGTAAAAAGGCTCCAGCCCAGAAGGTTCCTGCCCAGAAAGCCACAGGCCAGAAAGCAGCGCCTGCTCCAAAAGCTCAGAAGGGTCAAAAAGCTCCAGCCCAG CTX 63.24 LQ 2 CLoss NM_001950 915 geneB_no_transcripts MV4_11_RNAseq_1 CHCHD3 chr7 132720018 + intron JAK1 chr1 65305457 - coding > 0 3 153 160 0.500 0.050 0 126 0.000 0.060 154 149 1362 71 AGCAGCCAGCGCCTGCTCACATTCATCCATCTCCTCCTCAGGAGCAGGGGCAGCCGCCTTTTTCTCCTCCTTCCGCTCAGCCTGGGGCTTCTGCTTCTCTTCCCGTGAACCCTTCTCTTTCCGTGGTGTGTCCTTTTTAGGTTGGGTCTCTGCAGGTATGACCCCGAAGGGGACAATACAGGGGAGCAGGTGGCTGTTAAATCTCTGAAGCCTGAGAGTGGAGGTAACCACATAGCTGATCTGAAAAAGGAAATCGAGATCTTAAGGAACCTCTATCATGAGAACATTGTGAAGTACAAAGGAATCTGC CTX 63.00 LQ 0 NLoss 0,0 NM_017812, , 2, , , , , NM_002227,NM_002227 891,891 20, tuple,tuple 2671,2671 3465,3465 49, , SSQRLLTFIHLLLRSRGSRLFLLLPLSLGLLLLFP*TLLFPWCVLFRLGLCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGIC, CHCHD3:NM_017812[1,2]-JAK1:NM_002227[20,25]; geneB_transcripts=NM_002227 , 0, MV4_11_RNAseq_1 NDUFB1 chr14 92582467 - 3utr SRSF11 chr1 70717294 + 3utr > 2 4 99 253 0.490 0.000 62 16 0.450 0.000 111 116 11 3760 AAGGAAATTCAAACCCAGTGAAGAAGTTACCTGGAAGTAAAGACTGGCTAGATTATCGAATGTTCACATTTTAAAGTTCTGAGAGAAATAAAAACATGAAGAATCTGAAAAAAAAAAAAAAAGAAAAAAACCTTATCTCTTGCCCTTATTTTGAATTTTCCACTCTTTCATTAATTTGTTTTAAGCTCCGTGTTGGAAAAAAGGGGTAGTGCATTTTAAATTGACCTTCATACGCTTTTAAAATAAGACAAATCTACTTGATAATGTACCTTTATTTGATCTCAAGTTGTATAAAACCAATAAATTTGTGTTACTGCAGTAGTAATCTTATGCACACGGTGATTTCATGTTATATATGCAAAGTAGGCG CTX 62.00 LQ 2 other , , , , , , , , NM_001190987,NM_004768 , , , , 1452,1455 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001190987,NM_004768;geneb_utr_codons=13 , , MV4_11_RNAseq_1 LOC339862 chr3 18083033 + coding SATB1 chr3 18351731 + intergenic > 0 22 147 134 0.000 0.000 0 612 0.000 0.090 147 147 658 253 ACCAGTGACCTAGGAGAACCAGGGGGCTGGCATCCTGCAGCCACATGCACATGGTCTTCGATTAGATATTACTTCTTCTGAACAATCTTCCTTGATGACCCAGCTACTTTACATCTCTGGATGGAATCCTCCTCTTTGCTCTAATGTCTGTCATGACACATCAGAGACTGGTGGCTTCAGGAGCATAGATGGCAGACTTTTTCACAAAACTATCTGCCTTCACAGAACATAAACAGAACTCCATGAAGAAAGGAGAAAGGAAGCAAAACAGAAGTTTATC DEL 61.20 LQ 0 CLoss 0,0,0 NM_001257177,NM_001257177,NM_001257177 ,, ,, ,, 316,316,316 ,, ,, NM_002971,NM_001195470,NM_001131010 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 NA chr9 46025936 + intergenic NKX2-2 chr20 21468224 - intergenic > 3 4 298 111 0.990 0.670 177 275 0.370 0.330 304 306 47 9 TTTTATTTTATTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACTACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTCAGTTTAAATGTATGTAAATATCGAAGCTATATGGTATGATTTATAAAGATAAATGGGCCAAAGTGTACATTGAGACTGGCAGCCATCTATGGTACCACTGAAACCCTGAC CTX 61.16 LQ 0 other 0 NM_002509 geneB_no_transcripts MV4_11_RNAseq_1 DDX43 chr6 74083036 + intron PTPN9 chr15 75816630 - coding > 5 2 330 114 0.510 0.000 20 79 1.000 0.030 330 328 36 87 AACAGATTCAGAGAGGAAAACACGTCGAAATCTCCAGATAGTGGTGACATTTTCAGCTTGATATGGTAACATGATCGTGACCTTCAGACAGCATAAATATGTGTGCCATCTCATGTGCAATTCCTTATAGACCCAGCTTGGTTCTTCTCCAATGTCTCCTTTTGGAGTTGTACCTGATTTTATTTCCAGTTTTCATCCGAATCCACTGGGGAATGGGACGATTTTGCTTTTGTTTCTTGGCCAGGAATCGCTTAATCCTGAAAGTCTTGTGAGAAGACATGGCGAGCAGCGGAGTCAAGAACACACCACGATGGCGGAGAAAGGAAGAGGAGGGAAGGCATTGTAAAGCTGAAACCTCATGAGGAACCTCTTCGTTCTGAGATCCTCAGTGGAAAATTCACCATCTTAAATGTTCGGGACCCAACAGGAGCCTCCATTGCCC CTX 58.71 LQ 0 NLoss 0 NM_002833 73 blat 217 1782 geneA_no_transcript_IDs_found geneB_transcripts=NM_002833 MV4_11_RNAseq_1 CCSER1 chr4 91759770 - intron LARP4 chr12 50848176 + coding > 1 2 126 128 0.510 0.000 15 87 0.020 0.030 131 147 354 127 CACCGACAGCGAAGGCCGCGCCTGCCGGTCCCATCTGTGTATCCATCTGGGTGGCAGGGAAGGGAAGAACGTGCATGGTGGTGAAGGAAGAAGTGGGGTGGAAGAAGTGGGGTGGGACGACAGTGAAATCTAGAGTAAAACCAAGGTGGGTCGACCATTCCAAAAAAATCGGTAAGATAAAAACCATAGCTGTAATGTATTTTAAACAATTCCTAATGGATCTTAAGGCATTAATAGCAATGTTTGTTGTCAGGCTCAGTAATAAGGTTTGGTG CTX 57.63 LQ 0 NLoss ,,,,, NM_001145065,NM_001145065,NM_001145065,NM_001145065,NM_001145065,NM_001145065 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001170803,NM_001170804,NM_001170808,NM_052879,NM_199188,NM_199190 ,,,,, ,,,,, ,,,,, 884,1097,1097,1097,1094,884 1749,1338,1962,2175,2172,1962 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001170803,NM_001170804,NM_001170808,NM_052879,NM_199188,NM_199190 ,,,,, ,,,,, MV4_11_RNAseq_1 RPN2 chr20 35857127 + coding DAPK3 chr19 3969827 - 5utr > 0 4 74 146 0.000 0.000 1 95 0.000 0.170 74 81 1501 58 AAGAAAGATTGAATTTGACTCTGCCTCTGGCACCTACACTCTCTACTTAATCATTGGAGATGCCACTTTGAAGATGCGGAGGGGTTGCCATTAGGGGACTCCTGAGGTCCTATCTCCAGGCTGCGGTGACTGCACTTTCCCTGGAGTGGAAGCTGCTGGAAGGCGGACCGGCCGCCATGTCCACGTTCAGGCAGGAGGACGTGGAGGACCATTATGAGATGGGGGAG CTX 57.62 LQ 0 CLoss 0,0,3 NM_001135771,NM_002951, ,, 11,12, ,, 1378,1474, ,, ,, NM_001348,NM_001348,NM_001348 -31,-31,-31 2,2, tuple,tuple,tuple ,, 1365,1365,1365 29,29, ,, ERLNLTLPLAPTLST*SLEMPL*RCGGVAIRGLLRSYLQAAVTALSLEWKLLEGGPAAMSTFRQEDVEDHYEMGE,ERLNLTLPLAPTLST*SLEMPL*RCGGVAIRGLLRSYLQAAVTALSLEWKLLEGGPAAMSTFRQEDVEDHYEMGE, RPN2:NM_001135771[1,11]-DAPK3:NM_001348[2,9];RPN2:NM_002951[1,12]-DAPK3:NM_001348[2,9]; geneB_transcripts=NM_001348;geneb_utr_codons=13 ,, 2,2, MV4_11_RNAseq_1 FAM162A chr3 122128843 + 3utr ZFR chr5 32355682 - 3utr > 3 4 325 106 0.000 0.690 119 20 0.240 0.010 325 332 19 3115 CAGCTATCTAATGATTGCCCTGACGGTGGTAGGATGCATCTTCATGGTTATTGAGGGCAAGAAGGCTGCCCAAAGACACGAGACTTTAACAAGCTTGAACTTAGAAAAGAAAGCTCGTCTGAAAGAGGAAGCAGCTATGAAGGCCAAAACAGAGTAGCAGAGGTATCCGTGTTGGCTGGATTTTGAAAATCCAGGAATTATGTTATAACGTGCCTGTATTAAAAAGGATGTGGTATGAGGATCCATTTCATAAAGTATGATTTGCCCAAACCTGTACCATTTCCGTATTTCTGCTGTAGAAGTAGAAATAAATTTTCTTAAATAAAAAAAAAAAAAATGTGCTCCGACTAGGGGGAAAACAGTAGTTCCGATTTTGTCCCATTATTTTTATTTTATTTTAGGGTTGACCTAGCTTCCACCCTTATTTTTGTGTCTTTTTTTTTCTTGTTCATTGTTTTATTAAATCT CTX 56.89 LQ 0 other NM_014367 NM_016107 3225 geneB_no_inframe_contig_found geneB_transcripts=NM_016107;geneb_utr_codons=13 MV4_11_RNAseq_1 PI4KAP1 chr22 20394572 + 3utr G6PD chrX 153763469 - coding > 0 3 83 155 0.670 0.000 1 164 0.000 0.020 85 83 118 207 CTTCTTTCTCTCGTCGCCTTTAGGGTAGGGCTTGATGATAGCCGACACGTTGGTGATCTTGTTAAAGAAATCAAACTCCCGCTGGCCAACCGCCTCTTCTACCTGGCCTTGCCCCCGACCGTCTACGAGGCCGTCACCAAGAACATTCACGAGTCCTGCATGAGCCAGATAGGCTGGAACCGCATCATCGTGGAGAAGCCCTTCGGGAGGGACCTGCAGAGCTCTGACCGGCTGTCCA CTX 54.12 LQ 0 NLoss 3,3 , , , , , , , NM_000402,NM_001042351 163,133 , blat,blat 489,399 1638,1548 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_000402,NM_001042351 , , MV4_11_RNAseq_1 PI4KAP2 chr22 21838347 + 3utr G6PD chrX 153763469 - coding > 0 3 83 155 0.670 0.000 1 164 0.000 0.020 85 83 70 207 CTTCTTTCTCTCGTCGCCTTTAGGGTAGGGCTTGATGATAGCCGACACGTTGGTGATCTTGTTAAAGAAATCAAACTCCCGCTGGCCAACCGCCTCTTCTACCTGGCCTTGCCCCCGACCGTCTACGAGGCCGTCACCAAGAACATTCACGAGTCCTGCATGAGCCAGATAGGCTGGAACCGCATCATCGTGGAGAAGCCCTTCGGGAGGGACCTGCAGAGCTCTGACCGGCTGTCCA CTX 54.12 LQ 0 NLoss 3,3 , , , , , , , NM_000402,NM_001042351 163,133 , blat,blat 489,399 1638,1548 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_000402,NM_001042351 , , MV4_11_RNAseq_1 LOC339862 chr3 18090801 + intron SATB1 chr3 18383739 + intergenic > 11 0 276 122 0.000 0.000 537 0 0.020 0.040 276 276 617 288 GGAACAAGCAAAAAGATGGAGAAAAAGCTACCACCAGTGACCTAGGAGAACCAGGGGGCTGGCATCCTGCAGCCACATGCACATGGTCTTCGATTAGATATTACTTCTTCTGAACAATCTTCCTTGATGACCCAGCTACTTTACATCTCTGGATGGAATCCTCCTCTTTGCTCTAATGGAAGAAGTGTTCTTCTGACAGACAGTCTGGAACAAAGTGTGCGTACACACATACAATGAGTCAAGAGTTGGAGTGCGAAAACATGAGACCCCAAACAAAATTGACAAGCTGAATCTAAAATTCATAATGTAAGTACCCAGAATCACTGAAACAAGTTAGAAGAAAAAGAAGAAATGTAGAAGACTTGGGTACTTGAATTTAATATTCATTATAAAGCAG DEL 53.70 LQ 0 other 0,0,0 NM_001257177,NM_001257177,NM_001257177 ,, ,, ,, 316,316,316 ,, ,, NM_002971,NM_001195470,NM_001131010 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 LRRC8D chr1 90309341 + 5utr ZNF326 chr1 90432748 + intron > 8 8 74 109 0.000 0.000 372 228 0.070 0.060 74 74 60 10 CCAGCCTCCGGAGCTCGCCCAAGCCGCGTCCCCAGAGAGCGCCCTGAGAGAACAGGGTGGCCGCTTGGTCCAGAACTGAGCTGTGGGACGCTTACCCTCATGATATTCCCTTACTTTGAGATAACTGCGATTCTCTCACTTAATGGCAAGGAAAAAAATACTTGGAATGTGGCCCCTGAAAG DEL 51.03 LQ 0 other , NM_001134479,NM_018103 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 CNPY2,PAN2 chr12 56704742 - coding ACTB chr7 5567692 - coding > 3 0 299 133 0.000 0.480 97 0 0.010 0.000 300 308 1029 7973 GCCTTATGCCCGCTCAGAGGCCCACCTCACAGAGCTGCTGGAGGAGATATGTGACCGGATGAAGGAGTATGGGGAACAGATTGATCCTTCCACCCATCGCAAGAACTACGTACGTGTAGTGGGCCGGAATGGAGAATCCAGTGAACTGGACCTACAAGGCATCCGAATCGACTCAGATATTAGCGGCACCCTCAAGTTTGCGTGTGAGAGCATTGTGGAGGAATACGAGGATGAACTCATTGAATTCTTTTCCCGAGAGGCTGACAATGTTAAAGACAAACTTTGCAGTAAGCGAACAGATCTTTGATGCCGACAGGATGCAGAAGGAGATCACTGCCCTGGCACCCAGCACAATGAAGATCAAGATCATTGCTCCTCCTGAGCGCAAGTACTCCGTGTGGATCGGCGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAG CTX 50.44 LQ 2 Fusion 0,3 NM_014255, , 5, , 505, , , NM_001101,NM_001101 309,309 5, blat,blat 927,927 1128,1128 102, , LMPAQRPTSQSCWRRYVTG*RSMGNRLILPPIARTTYV*WAGMENPVNWTYKASESTQILAAPSSLRVRALWRNTRMNSLNSFPERLTMLKTNFAVSEQIFDADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ, CNPY2:NM_014255[1,5]-ACTB:NM_001101[5,6]; geneB_transcripts=NM_001101 , 2, MV4_11_RNAseq_1 HAGLR chr2 177065705 - intron ZNHIT6 chr1 86173619 - coding > 0 4 123 144 0.740 0.000 0 192 0.000 0.060 145 136 126 155 ACGTGTGCTCTTCCGATCTCTGGCCAACGTCAACATTGGGAGCCTCATCTGCAATGTAGGGGCCGGTGGACCTGCTCCAGCAGCTGGTGCTGCACCAGCAGGAGGTCCTGCCCCCTCCACTGCTGCTGCTCCAGCTGAGGTGAAGCAGGAGACGGATAGTAGTTTAGTGGTAAAAGAAGCGAAGGTGGGTGAACCAGAGGTAAAGGAAGAGAAGGTAAAGGAAGAGGTAATGGACTGGTCAGAAGTGAAGGAAGAGAAGGATAACTTGGAGATAAAACAG CTX 49.92 LQ 0 NLoss 3,3 , , , , , , , NM_001170670,NM_017953 78,116 , tuple,tuple 232,346 1296,1413 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_001170670,NM_017953 , , MV4_11_RNAseq_1 FGL2 chr7 76822915 - 3utr NA chr11 41995879 - intergenic > 4 0 77 72 0.000 0.000 221 1 0.010 0.000 78 78 2250 12 TAATAGTAATGCTCCAAATGAATTAATGACACATCTGTTCAATAAATAAAGAGCTTAAATATACAAAACATAAGAAAAAAAAAAAATCAAATTTTACTGATAATAGTAATGCTCCAAATGAATTAATGACACATCTGTTCAATAAATAAAG CTX 49.31 LQ 0 other , NM_006682,NM_020879 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 RFXANK chr19 19307855 + coding MIR372 chr19 54278870 - intron > 3 0 171 75 0.000 0.750 190 1 0.020 0.010 172 183 994 0 GGCTCAGACACTGTGGTCCTCAGTCTCTTTCCCTGCACCCCTGAGCCTGTGAATCCTGAACCGGATGCCAGTGTTTCCTCTCCACAGGCAGGCAGCTCCCTGAAGCACTCCACCACTCTCACCAACCGGCAGCGAGGGAACGAGGTGTCAGCTCTGCCGGCCACCCTGGACTCCCTGTCCATCTCGGAGACAGAGGCCATGGCGCGGGCGAGTGTAGGGCTGGCGCTGCCGGACGCGGTGCTAGTCGCCGGATGAAGTGAG ITX 48.50 LQ 0 CLoss ,,, NM_001278727,NM_001278728,NM_003721,NM_134440 ,,, ,,, ,,, 271,268,271,268 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_transcripts ,,, ,,, MV4_11_RNAseq_1 NA chr4 88813766 + intergenic BAZ1A chr14 35240813 - coding > 0 4 77 136 0.750 0.000 1 188 0.010 0.020 81 80 1 269 GGAAGAGAAAGGTGAGAAAGAAGAGGAAGATAAAGATGATGAAGAAAAACCCAAGATCGAAGATGTGGGTTCAGATGAGGACACCACAATCAGTGAGCAGTGTGGTTCATTATCTGGCAATGGCACTCTTTCAAATAGAGCAGGGCATTGAGCGGCGTTTTCTGAAAGCTCCACTTGATGCCAGTGACAGTGGGCGTTCTTATAAAACAGTTCTGG CTX 48.00 LQ 0 NLoss 3,3 , , , , , , , NM_013448,NM_182648 1069,1037 , tuple,tuple 3205,3109 4671,4575 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_013448,NM_182648 , , MV4_11_RNAseq_1 TMCO1 chr1 165737429 - coding EFHC2 chrX 44168660 - intron > 7 0 59 74 0.370 0.680 245 1 0.010 0.020 147 161 1054 0 CTGGATGAAGGCGAAGGCATACTCCGTGGCTTGAGCTGGCAGCACCCGAGTGCTGAAGGCAGGTGATAGGGTACCCAGGCGGGTGGATTACAGGACAGACAAGTACAAGAGACTGAAGGCAGAAGTGGAAAAACAGAGTAAAAAATTGGAAAAGAAGAAGGAAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCAAGTCCAACAGAGAATTCTN CTX 47.55 LQ 0 CLoss ,, NM_001256164,NM_001256165,NM_019026 ,, ,, ,, 199,112,301 ,, ,, NM_025184,NM_025184,NM_025184 ,, ,, ,, 231,231,231 2250,2250,2250 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_025184 ,, ,, MV4_11_RNAseq_1 RAB28 chr4 13338874 + intergenic BAZ1A chr14 35240813 - coding > 0 4 78 136 0.750 0.000 1 188 0.000 0.020 81 80 6 269 GGAAGAGAAAGGTGAGAAAGAAGAGGAAGATAAAGATGATGAAGAAAAACCCAAGATCGAAGATGTGGGTTCAGATGAGGACACCACAATCAGTGAGCAGTGTGGTTCATTATCTGGCAATGGCACTCTTTCAAATAGAGCAGGGCATTGAGCGGCGTTTTCTGAAAGCTCCACTTGATGCCAGTGACAGTGGGCGTTCTTATAAAACAGTTCTGG CTX 47.00 LQ 0 NLoss 3,3 , , , , , , , NM_013448,NM_182648 1069,1037 , tuple,tuple 3205,3109 4671,4575 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_013448,NM_182648 , , MV4_11_RNAseq_1 ANXA7 chr10 75181968 - intron HMGB1 chr13 31035420 - 3utr > 4 0 142 361 0.930 0.660 138 0 1.000 0.000 143 135 11 19315 CGCAAAAAGATCCTCGAACGGAAAGCCAAATCTCGCCAAGTAGGAAAGGAAAAGGGCAAATACAAGGAAGAAACCATTGAGAAGATGCAGGAATAAAGTAATCTTATATACAAGCTTTGATTAAAACTTGAAACAAAGAAAAAAATTGAAATGTAAGGCTGTGTAAGATTTGTTTTTAAACTGTACAGTGTCTTTTTTTGTATAGTTAACACACTACCGAATGTGTCTTTAGATAGCCCTGTCCTGGTGGTATTTTCAATAGCCACTAACCTTGCCTGGTACAGTATGGGGGTTGTAAATTGGCATGGAAATTTAAAGCAGGTTCTTGTTGGTGCACAGCACAAATTAGTTATATATGGGGATGGTAGTTTTTTCATCTTCAGTTGTCTCTGATGCAGCTTATACGAAATAATTGTTGTTCTGTTAACTGAATACCACTCTGTAATTGCAAAAAAAAAAAAAAGTTGCAGCTGTTTTGTTGACATTCTGAATGCTN CTX 46.92 LQ 0 other NM_002128 648 geneB_no_inframe_contig_found geneB_transcripts=NM_002128;geneb_utr_codons=13 MV4_11_RNAseq_1 LOC493754 chr7 66071912 + intron ADAMTSL4-AS1,MCL1 chr1 150548890 - 3utr > 0 35 131 461 0.790 0.030 0 217 0.140 0.150 156 171 22 670 GTTCAGACGTGTGCTCTTCCGATCTCTTGGTCTTCAGGTTCTCCTCGTGCTTGTTGAGCCGGCGGCGCATGGCACGTGTCTTCTTAGGCCGCAGGTCCAGGGGCTTGTACTTCTTGCCCTTGTAGAATTTCCTGAGGTTTTCTTTCTGAGTCTGGTAAGTATTCCTTAGATAGGTTTTTCTTTGAAAACCTGGGATTGAGAGGTTGATGAATGGAAATTCTTTCACTTCATTATATGCAAGTTTTCAATAATTAGGTCTAAGTGGAGTTTTAAGGTTACTGATGACTTACAAATAATGGGCTCTGATTGGGCAATACTCATTTGAGTTCCTTCCATTTGACCTAATTTAACTGGTGAAATTTAAAGTGAATTCATGGGCTCATCTTTAAAGCTTTTACTAAAAGATTTTCAGCTGAATGGAACTCATTAGCTGTGTGCATATAAAAAGATCACATCAGGTGGATGGAGAGACATTTGATCCCTTGTTTGCTTAATAAATTATAAAATGATGGCTTGGAAAAGCAGGCTAGTCTAACCATGGTGCTATTATTAGGCTTGCTTGTTACACACACAGGTCTAAGCCTAGTATGTCAATAAAGCAAATACTTACTGTTTTGTTTCTATTAATGATT CTX 45.57 LQ 0 other ,, ,, ,, ,, ,, ,, ,, ,, NM_001197320,NM_021960,NM_182763 ,, ,, ,, ,, 594,1053,816 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001197320,NM_021960,NM_182763;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 STX3 chr11 59548707 + intron RBM25 chr14 73572766 + coding > 0 4 120 109 0.740 0.000 0 174 0.000 0.020 132 127 1904 661 CAATCTCAAAAACAAATTTATTTATTAACCAAAGGGATAATCCTAATTAATCAAACACACTTTGAAATAGCTGCATGTAAAATGTTTATGATAAAGATAATTGAACACAGTAATGAAAAAAAAAAGAAAGAAGCTGCTTATCAAGAGCGCCTTAAGAATTGGGAAATCAGAGAACGAAAGAAAACCCGGGAATATGAGAAAGAAGCTGAAAGAGAAGAGGAAATAAGAGAGAAAAG CTX 45.24 LQ 0 NLoss 0,0,3 NM_001178040,NM_004177, ,, 2,2, ,, 115,115, ,, ,, NM_021239,NM_021239,NM_021239 452,452,452 11,11, blat,blat,blat 1354,1354,1354 2532,2532,2532 42,42, ,, QSQKQIYLLTKGIILINQTHFEIAACKMFMIKIIEHSNEKKKKEAAYQERLKNWEIRERKKTREYEKEAEREEEIREK,QSQKQIYLLTKGIILINQTHFEIAACKMFMIKIIEHSNEKKKKEAAYQERLKNWEIRERKKTREYEKEAEREEEIREK, STX3:NM_001178040[1,2]-RBM25:NM_021239[11,19];STX3:NM_004177[1,2]-RBM25:NM_021239[11,19]; geneB_transcripts=NM_021239 ,, 0,0, MV4_11_RNAseq_1 TAPT1 chr4 16257860 - intron DCAF6 chr1 168025027 - intron ? 0 4 74 136 0.000 0.740 1 147 0.000 0.020 77 68 0 1044 TTTTGACTGGAGAGAATCACAGATGTGGAATATTTGTCATAAATAAATAATGAAAACCTAAAAAAAAAAAAAAAAAACTACTGTTAACACTGCTAATGAAAGAAAATGCCCTTTAACTTTCTAATGATTATAGATAAATATAATATGCGTCTTTTTCACAATATCCTATGATTTTTAGACTAGGCTCTAGTGTTCAGAATTCATAGATCGGAAGAGCGTC CTX 44.58 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 GHITM chr10 85901216 - 5utr SCAMP2 chr15 75165607 - 5utr ? 1 2 231 69 0.000 0.000 15 88 0.010 0.010 231 235 1405 210 CTTTGAGTTCTTGGCCAGTTCTCCCACGCCGGATCCCAATTCTTGTTTTGGTGGCATATTCCCTGCTAGGTGTTAACAGCCATTGATTCTTCGTGATGGAATTCTTCACAACAGGGGAGGCCTTGGTGAAAGCTGGGTGGAAAACCCTAGAAGGTAGTGTCCGGAGACACACCAGCCTTGCAGCCAACATGGTGGTGGTGCACCAGGTCTACCGAGCAGATCTGAAATGCTCGGTCCCCGATCACCATGTCGGCTTTCGACACCAACCCCTTCGCGGACCCAGTGGATGTAAACCCCTTCCAGGATCCCTC CTX 44.37 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 ATP5C1 chr10 7830155 - 5utr EEF1G,MIR3654,MIR6747 chr11 62340089 - coding > 2 1 149 252 0.000 0.500 88 8 0.200 0.000 150 145 1140 22114 TAATTTTCTGGATGTTTTTGATGGACTTTAGTCTCCTGGTGATATCTTTCAAAGTTGCCATATTTCGAACTTGAATCCATTGCGGCTGCAAGGTCCAGGCCGACAGCCCAGCGACACCCGCGCGAGAGAACATGGTAGCCACAGCCCTGAATTTCTCCGCAAATTTCCTGCCGGCAAGGTCCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAACGCCATTGCCTACTATGTGAGCAATGAGGAGCTGCGGGGAAGTACTCCAGAGGCAGCAGCCCAGGTGGTGCAGTGGGTGAGCTTTGCTGATTCCGATATAGTGCCCCCAGCCAGTACCTGGGTGTTCCCCACCTTGGGCATCATGCACCACAACAAACAGGCCACTGAGAA CTX 44.00 LQ 0 NLoss 0,0,0 NM_001001973,NM_005174, ,, 1,1, ,, ,, ,, ,, NM_001404,NM_001404,NM_001404 46,46,46 2,2, blat,blat,blat 138,138,138 1314,1314,1314 48,48, ,, NFLDVFDGL*SPGDIFQSCHISNLNPLRLQGPGRQPSDTRAREHGSHSPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATE,NFLDVFDGL*SPGDIFQSCHISNLNPLRLQGPGRQPSDTRAREHGSHSPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATE, ATP5C1:NM_001001973[1,1]-EEF1G:NM_001404[2,10];ATP5C1:NM_005174[1,1]-EEF1G:NM_001404[2,10]; geneB_transcripts=NM_001404 ,, 1,1, MV4_11_RNAseq_1 FEM1A chr19 4794549 - 3utr PBX3 chr9 128729368 + 5utr ? 2 1 147 120 0.790 0.000 86 6 0.150 0.000 148 138 89 647 ACCGTGGACTTTTATCTCGCTCACCAAATTCCTCACACATACAGCTCACTCCCTGTGCCCTCGGCCATCTCAGGCACCACAAAATCCTCACTGCTTGAAATTCACTTATGGAGTCCAACAAACAACTTTCTTAAAAAAAAAAAAAAAAAAAAAGCAGCGACTAATTGTGATGCATTCAGATTTCAGTATTCAGTACTGTATATTTCACCCTGTGTAATGGGGCCCCCTCTCCTTTCTCTCTTTTTGTATTGTATGCG CTX 43.00 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 ARL14EPL chr5 115387796 - intron G6PD chrX 153759828 - 3utr > 0 3 132 118 0.850 0.000 0 281 0.000 1.000 149 149 303 51 TGTGCTCTTCCGATCTCAAAGACCCAGTGAACAAATCCGGGGGCAAGGCCAAAAAGAAGAAGTGGTCCAAAGGCAAAGTTCGGGACAAGCTCAATAACTTAGTCTTGTTTGACAAAGCTACCTATGATAAACTCTGTAAGGAAGTTCCCGAGAGAATCTGCCTGTGGCCTTGCCCGCCAGCCTCAGTGCCACTTGACATTCCTTGTCACCAGCAACATCTCGAGCCCCCTGGATGTCCCCTGTCCCACCAACTCTGCACTCCATGGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCA CTX 42.15 LQ 0 other , NM_001195581,NM_001195581 , , , , , , NM_000402,NM_001042351 , , , , 1638,1548 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_000402,NM_001042351;geneb_utr_codons=13 , , MV4_11_RNAseq_1 CDC42 chr1 22418445 - 3utr TMCO1 chr1 165728818 - coding > 8 1 419 66 0.520 0.000 100 84 0.010 0.020 420 431 1970 1131 GTGCATTTCAAAGGTGCAATACTTTTCTTCATTTATCAGTGAAAGAAGTTAGAAATTAACTTCCCAAAAAAATCAGCAAATGGCAAACAAATGTCCTTGAAAGTCACAGTCACATATAGTGCGTCCTAGAAAAGAGGAGGGGCAAGATGGGCTCCACCCACTTTCATGAGTTTCATCAAATACTGGATCTACTCAAGGGTGGAGAGAAAAGGCAACTTTCAAAAAGGAGTATGTTATTAAATGAGGCATTTACTATACTCCTTCCTAAGAGCACCAGATGGGGAACATGTTTTCTAAACTAGATCTAGGAAGTGGAATGTGGAATCAATCCGTCCTCCTCCCCTTAAGGGCTAACCACTGGTTAATGAATTAAAAAAACAAGACTAAAAAACAAACCCCACACACACTCCCCCCCAAAAAAAAAGAGGAGGGAAAAAATAACAGAGTCAGCTGGTCGACAACAGAAAAAGAAAATAGAGAGACAAGAAGAGAAACTG INS 41.43 LQ 1 NLoss 0,0,0,0,0,0,0,0,0 NM_001039802,NM_001791,NM_001039802,NM_001791,NM_001039802,NM_001791,,, ,,,,,,,, 7,6,7,6,7,6,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, NM_001256164,NM_001256164,NM_001256165,NM_001256165,NM_019026,NM_019026,NM_001256164,NM_001256165,NM_019026 68,68,39,39,102,102,68,39,102 3,3,3,3,3,3,,, blat,blat,blat,blat,blat,blat,blat,blat,blat 203,203,116,116,305,305,203,116,305 618,618,531,531,720,720,618,531,720 143,143,143,143,143,143,,, ,,,,,,,, AFQRCNTFLHLSVKEVRN*LPKKISKWQTNVLESHSHI*CVLEKRRGKMGSTHFHEFHQILDLLKGGEKRQLSKRSMLLNEAFTILLPKSTRWGTCFLN*I*EVECGINPSSSP*GLTTG**IKKTRLKNKPHTHSPPKKKRREKITESAGRQQKKKIERQEEKL,AFQRCNTFLHLSVKEVRN*LPKKISKWQTNVLESHSHI*CVLEKRRGKMGSTHFHEFHQILDLLKGGEKRQLSKRSMLLNEAFTILLPKSTRWGTCFLN*I*EVECGINPSSSP*GLTTG**IKKTRLKNKPHTHSPPKKKRREKITESAGRQQKKKIERQEEKL,AFQRCNTFLHLSVKEVRN*LPKKISKWQTNVLESHSHI*CVLEKRRGKMGSTHFHEFHQILDLLKGGEKRQLSKRSMLLNEAFTILLPKSTRWGTCFLN*I*EVECGINPSSSP*GLTTG**IKKTRLKNKPHTHSPPKKKRREKITESAGRQQKKKIERQEEKL,AFQRCNTFLHLSVKEVRN*LPKKISKWQTNVLESHSHI*CVLEKRRGKMGSTHFHEFHQILDLLKGGEKRQLSKRSMLLNEAFTILLPKSTRWGTCFLN*I*EVECGINPSSSP*GLTTG**IKKTRLKNKPHTHSPPKKKRREKITESAGRQQKKKIERQEEKL,AFQRCNTFLHLSVKEVRN*LPKKISKWQTNVLESHSHI*CVLEKRRGKMGSTHFHEFHQILDLLKGGEKRQLSKRSMLLNEAFTILLPKSTRWGTCFLN*I*EVECGINPSSSP*GLTTG**IKKTRLKNKPHTHSPPKKKRREKITESAGRQQKKKIERQEEKL,AFQRCNTFLHLSVKEVRN*LPKKISKWQTNVLESHSHI*CVLEKRRGKMGSTHFHEFHQILDLLKGGEKRQLSKRSMLLNEAFTILLPKSTRWGTCFLN*I*EVECGINPSSSP*GLTTG**IKKTRLKNKPHTHSPPKKKRREKITESAGRQQKKKIERQEEKL,,, CDC42:NM_001039802[1,7]-TMCO1:NM_001256164[3,7];CDC42:NM_001791[1,6]-TMCO1:NM_001256164[3,7];CDC42:NM_001039802[1,7]-TMCO1:NM_001256165[3,7];CDC42:NM_001791[1,6]-TMCO1:NM_001256165[3,7];CDC42:NM_001039802[1,7]-TMCO1:NM_019026[3,7];CDC42:NM_001791[1,6]-TMCO1:NM_019026[3,7];;; geneB_transcripts=NM_001256164,NM_001256165,NM_019026 ,,,,,,,, 2,2,2,2,2,2,,, MV4_11_RNAseq_1 COG1 chr17 71170908 - intron TMEM194A chr12 57450127 - 3utr > 2 2 105 142 0.840 0.000 30 66 0.030 0.090 135 134 5 258 AAATTTAAGTCTCGATGCTCCTCCGTCATAGAATTAAAAAATTAAAGAAAGCAATGCTTTAAATTTTTGTACTTTGCTGAAAATTCTTTTTCCCAGGGTCTATAAAACATTAATTTGTTTTTATATTTTACTATTTTTTTGTGTTTTTTTAGGGGAACCTATATAATTATGACCCAGTGATGTCTTTTGGTGACTTAAGCTTATGAATTCAGGTTACAATTGAGTTGATTCTAGATGGTTACTACCTTGAAAAGGATGTTGGTGCCTTATGTGACACG CTX 40.56 LQ 0 other , , , , , , , , NM_001130963,NM_015257 , , , , 1335,1116 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001130963,NM_015257;geneb_utr_codons=13 , , MV4_11_RNAseq_1 NA chr8 130382623 + intergenic NA chr8 130560480 + intergenic ? 9 0 48 307 0.000 0.000 804 0 0.040 0.090 48 48 129 194 ATCTGGTTTAGTCAGCATGACTATGTGTCTTCTCTCCTCAGGCCTTCCTTCCTCCTGTCCCCTTCAGTCCTGGACTGAGTTCAATGCACACATCTTGCACAGAATAGATGTTCATATATTCTTGGTTTAAGTGCCTATCAACCTTCATATAATTCCACTGGGTCTACTGAAAGATGGCAGAAGACGGACAGTCATAGTGTTTACTATGGGCCAAATCCTTCTCCCATATTTGCTCCTTTAATTTTCCCAATTCAATGAAGTAGCTCAGTGAAGTAGCTCAATGATGTAGCTCGGTGAAGTGCCCCACTTTGCAGTTGACAAGTTCTAAGGCTCAGAGTTGAAGTGACATCCGAG DEL 40.20 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 MDC1 chr6 30667680 - 3utr FARSA chr19 13033656 - coding > 4 0 125 72 0.000 0.000 180 1 0.230 0.000 126 121 109 2046 CTTTGGGGTCAGGAACTTGAAGGGATGCTTGGAGTGAGTAGATTTGAGGGTCCAGTTATGGAGTGCTACTAAAACATTTTCTTCTCTCCTGGCCTCTGGAAGCATCTTTAGCTTTGACTTTGGGCCACAAGGTGAACCTGCAGATGGTGTATGACAGTCCCCTGTGCCGCCTGGATGCCGAGCCGAGGCCCC CTX 40.16 LQ 0 NLoss 0,3 NM_014641, , 15, , , , , NM_004461,NM_004461 478,478 13, blat,blat 1433,1433 1527,1527 40, , LGSGT*RDAWSE*I*GSSYGVLLKHFLLSWPLEASLALTLGHKVNLQMVYDSPLCRLDAEPRP, MDC1:NM_014641[1,15]-FARSA:NM_004461[13,13]; geneB_transcripts=NM_004461 , 2, MV4_11_RNAseq_1 RNF135 chr17 29361515 + intergenic TTPAL chr20 43095318 + intron > 8 0 201 141 0.920 0.660 117 0 0.020 0.000 202 208 2127 13 GGAAGAGGTGATTTATTATATGGTTGTTACACTCGGCCACAAATAAACACAGAAATAGTCCAGAATGTCACAGGTCCAGGGCAGAGGACCAACATGGGCATTTTGTTTATGAGCAAGGTGGGTCTCAGAGGTGATCGGCGATCAGAGGGCGATGAAGTTCTAGATCCATTGAGACAAGCTCTAGACAGTAGCATGCAGTCCCACAACTCCCCACAGCTCGTCTCTTCATCTTGGTTTTGCCACAGAAAGAGCAAGTGTACTTGGCGTGCTGGCTGATTTCAATTTTCTTCACCATTTTCCGGAGGGAGGCCCCATAGCGGGTCCCGTATTTACCGACGATCCCGACTTTCTTGAGATCGG CTX 39.78 LQ 0 other 0 NM_001184992 geneB_no_transcripts MV4_11_RNAseq_1 FAM162A chr3 122128843 + 3utr ZFR chr5 32355682 - 3utr > 3 0 321 106 0.010 0.690 128 0 0.240 0.010 322 327 19 3115 CAGCTATCTAATGATTGCCCTGACGGTGGTAGGATGCATCTTCATGGTTATTGAGGGCAAGAAGGCTGCCCAAAGACACGAGACTTTAACAAGCTTGAACTTAGAAAAGAAAGCTCGTCTGAAAGAGGAAGCAGCTATGAAGGCCAAAACAGAGTAGCAGAGGTATCCGTGTTGGCTGGATTTTGAAAATCCAGGAATTATGTTATAACGTGCCTGTATTAAAAAGGATGTGGTATGAGGATCCATTTCATAAAGTATGATTTGCCCAAACCTGTACCATTTCCGTATTTCTGCTGTAGAAGTAGAAATAAATTTTCTTAAATAAAAAAAAAAAAAATGTGCTCCGACTAGGGGGAAAACAGTAGTTCCGATTTTGTCCCATTATTTTTATTTTATTTTAGGGTTGACCTAGCTTCCACCCTTATTTTTGTGTCTTTTTTTTTCTTGTTCATTGTTTTATTAAATCT CTX 39.68 LQ 0 other NM_014367 NM_016107 3225 geneB_no_inframe_contig_found geneB_transcripts=NM_016107;geneb_utr_codons=13 MV4_11_RNAseq_1 TMEM33 chr4 41962178 + 3utr GNMT chr6 42924380 - intron > 4 0 140 86 0.000 0.800 198 0 0.010 0.000 141 141 714 221 GAAAAATTCATTCCCCTGTATTCAAGACCAAAGCACATAAATGCTAATGTAGGGCTCAGAGGGGAAATACAGTTCTCCTGCATATTTGAGAAAATGTGAAGTCCTTTCAAGAAAATCTAATAAACATAATAATCATAGCCCCAGTTTCTTAATGCGAAATGCGAGTCGGCTTTCCTTTCCAAGAGGAATCCTCGGCAGATAAACTGGACTGTCCTCTACAGAAGGAAGG CTX 39.60 LQ 0 other NM_018126 geneB_no_transcripts MV4_11_RNAseq_1 NA chr13 82264350 + intergenic CDK11B,CDK11A chr1 1575775 - coding > 10 2 40 252 0.950 0.500 79 55 0.070 0.070 41 50 466 308 CGGGAATGCTAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGAAGAAGCAGAGGAAGAAGTGGGTGAGGGAACGCCGCAGAGCAGCGCCCTGACAGAGGGCGACTATGTGCCCGACTCCCCTGCCCTGTCGCCCATCGAGCTCAAGCAGGAGCTGCCCAAGTACCTGCCGGCCCTGCAGGGCTGCTGGAGCGTCGAGGAGTTCCAGTGCCTGAACAGGATCGAGGAGGGCACCTATGGAGTGGTCTACAGAGCAAAAGACAAGAAAACAGATGAAATTGTGGCTCTAAAGCGGC CTX 39.50 LQ 0 NLoss 0,0 , , , , , , , NM_033487,NM_033490 116,155 , tuple,tuple 346,463 1581,1698 , , , ; geneB_CDS_mapping_exception=NM_001291345:-4;geneB_breakpoint_not_mapped_to_CDS=NM_001291345;geneB_CDS_mapping_exception=NM_001787:-4;geneB_breakpoint_not_mapped_to_CDS=NM_001787;geneB_CDS_mapping_exception=NM_033486:-4;geneB_breakpoint_not_mapped_to_CDS=NM_033486;geneA_no_transcript_IDs_found;geneB_CDS_mapping_exception=NM_033489:-4;geneB_breakpoint_not_mapped_to_CDS=NM_033489 geneB_transcripts=NM_001291345,NM_001787,NM_033486,NM_033487,NM_033489,NM_033490 , , MV4_11_RNAseq_1 ATOX1 chr5 151145526 - intron ZNHIT6 chr1 86173619 - coding > 0 4 94 144 0.800 0.000 1 192 0.000 0.060 99 90 41 155 ATCTGCAATGTAGGGGCCGGTGGACCTGCTCCAGCAGCTGGTGCTGCACCAGCAGGAGGTCCTGCCCCCTCCACTGCTGCTGCTCCAGCTGAGGTGAAGCAGGAGACGGATAGTAGTTTAGTGGTAAAAGAAGCGAAGGTGGGTGAACCAGAGGTAAAGGAAGAGAAGGTAAAGGAAGAGGTAATGGACTGGTCAGAAGTGAAGGAAGAGAAGGATAACTTGGAGATAAAACAG CTX 38.40 LQ 0 NLoss 3,3 , , , , , , , NM_001170670,NM_017953 78,116 , tuple,tuple 232,346 1296,1413 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_001170670,NM_017953 , , MV4_11_RNAseq_1 KIAA1586 chr6 56919728 - 3utr SERBP1 chr1 67895872 - coding > 2 4 291 334 0.000 0.660 112 35 0.060 0.000 292 288 156 2403 GTTTTTATTCCATTTCTCTTTTATTTAATATAACCTCCAGGGCTTAGAACTTAGCTGAGTCCTGCTATTTTTTGCATCCTTACTTAAAGTAAAACAGTACAAAATTATAAACGGTGTTTGTTCTGTACAGAACTTCATGGAATATGTATTATGACCCACTCTAGCAAACATGGGCCAATCTCTAAAAAACTATAGCTTCTAAAACCAATCTTCAAGATTATCTTCTTAAAGAACGCCTTTTAAACAGCAACATGCTGATAAAAGTTTAACTGGCTTTCCAAAAAAAAAAAAAAGAAGCCGGCGGGGGCGGCGTTGGGGGCCCTGGGGCCAAGAGCGCAGCTCAGGCCGCGGCCCAGACCAACTCCAACGCGGCAGGCAAACAGCTGCGCAAGGAGTCCCAGAAAGACCGCAAGAACCCGCTGCCCCCCAGCGTTGGCGTGGTTGACAAGAAAGAGGAGACGCAGCCGCCCGTGGCGCTTAAGAAAGAAGGAATAAGACGAGTTGGAAGAAGACCTGATCAACAACTTCAGGGTGAAGGGAAAATAATTGATAGAAGACCAGAAAGGCGACCACCTCGTGAACGAAGATTCGAAAAGCCACTTGAAGAAAAGGGTGAAGGAG CTX 38.08 LQ 0 NLoss 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 NM_001286274,NM_001286275,NM_001286276,NM_020931,NM_001286274,NM_001286275,NM_001286276,NM_020931,NM_001286274,NM_001286275,NM_001286276,NM_020931,NM_001286274,NM_001286275,NM_001286276,NM_020931,,,, ,,,,,,,,,,,,,,,,,,, 3,4,4,4,3,4,4,4,3,4,4,4,3,4,4,4,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, NM_001018067,NM_001018067,NM_001018067,NM_001018067,NM_001018068,NM_001018068,NM_001018068,NM_001018068,NM_001018069,NM_001018069,NM_001018069,NM_001018069,NM_015640,NM_015640,NM_015640,NM_015640,NM_001018067,NM_001018068,NM_001018069,NM_015640 38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 112,112,112,112,112,112,112,112,112,112,112,112,112,112,112,112,112,112,112,112 1227,1227,1227,1227,1209,1209,1209,1209,1182,1182,1182,1182,1164,1164,1164,1164,1227,1209,1182,1164 95,95,95,95,95,95,95,95,95,95,95,95,95,95,95,95,,,, ,,,,,,,,,,,,,,,,,,, FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,,,, KIAA1586:NM_001286274[1,3]-SERBP1:NM_001018067[1,8];KIAA1586:NM_001286275[1,4]-SERBP1:NM_001018067[1,8];KIAA1586:NM_001286276[1,4]-SERBP1:NM_001018067[1,8];KIAA1586:NM_020931[1,4]-SERBP1:NM_001018067[1,8];KIAA1586:NM_001286274[1,3]-SERBP1:NM_001018068[1,8];KIAA1586:NM_001286275[1,4]-SERBP1:NM_001018068[1,8];KIAA1586:NM_001286276[1,4]-SERBP1:NM_001018068[1,8];KIAA1586:NM_020931[1,4]-SERBP1:NM_001018068[1,8];KIAA1586:NM_001286274[1,3]-SERBP1:NM_001018069[1,8];KIAA1586:NM_001286275[1,4]-SERBP1:NM_001018069[1,8];KIAA1586:NM_001286276[1,4]-SERBP1:NM_001018069[1,8];KIAA1586:NM_020931[1,4]-SERBP1:NM_001018069[1,8];KIAA1586:NM_001286274[1,3]-SERBP1:NM_015640[1,8];KIAA1586:NM_001286275[1,4]-SERBP1:NM_015640[1,8];KIAA1586:NM_001286276[1,4]-SERBP1:NM_015640[1,8];KIAA1586:NM_020931[1,4]-SERBP1:NM_015640[1,8];;;; geneB_transcripts=NM_001018067,NM_001018068,NM_001018069,NM_015640 ,,,,,,,,,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,,,, MV4_11_RNAseq_1 FAM162A chr3 122128843 + 3utr NA chr10 90899392 + intergenic > 3 0 321 89 0.010 0.720 128 1 0.240 0.010 322 326 19 0 CAGCTATCTAATGATTGCCCTGACGGTGGTAGGATGCATCTTCATGGTTATTGAGGGCAAGAAGGCTGCCCAAAGACACGAGACTTTAACAAGCTTGAACTTAGAAAAGAAAGCTCGTCTGAAAGAGGAAGCAGCTATGAAGGCCAAAACAGAGTAGCAGAGGTATCCGTGTTGGCTGGATTTTGAAAATCCAGGAATTATGTTATAACGTGCCTGTATTAAAAAGGATGTGGTATGAGGATCCATTTCATAAAGTATGATTTGCCCAAACCTGTACCATTTCCGTATTTCTGCTGTAGAAGTAGAAATAAATTTTCTTAAATAAAAAAAAAAAAAATGTGCTCCGACTAGGGGGAAAACAGTAGTTCCGATTTTTTCCCATTATTTTTATTTTATTTTCTGGTTGCCCTAGCTTCCCCC CTX 36.83 LQ 0 other NM_014367 geneB_no_transcripts MV4_11_RNAseq_1 BDNF-AS chr11 27603412 + intron G6PD chrX 153759828 - 3utr > 0 3 93 118 0.870 0.000 1 281 0.000 1.000 94 94 45 51 GAAGAAGTGGTCCAAAGGCAAAGTTCGGGACAAGCTCAATAACTTAGTCTTGTTTGACAAAGCTACCTATGATAAACTCTGTAAGGAAGTTCCCGAGAGAATCTGCCTGTGGCCTTGCCCGCCAGCCTCAGTGCCACTTGACATTCCTTGTCACCAGCAACATCTCGAGCCCCCTGGATGTCCCCTGTCCCACCAACTCTGCACTCCATGGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCA CTX 36.53 LQ 0 other , , , , , , , , NM_000402,NM_001042351 , , , , 1638,1548 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_000402,NM_001042351;geneb_utr_codons=13 , , MV4_11_RNAseq_1 MPLKIP chr7 40172641 - 3utr IL6ST chr5 55240803 - intron > 0 11 74 276 0.000 0.930 0 60 0.000 0.340 74 85 983 1815 CAACAATACAGCAATACTCAAACATTCACAGGCAAAAAAGGAAGATACTTTTGTTAACATTTCTGAAATTCAACCTCGGCCACAAATAAACACAGAAATAGTCCAGAATGTCACAGGTCCAGGGCAGAGGACCAACATGGGCATTTTGTTTATGAGCAAGGTGGGTCTCAGAGGTGATCGGCGATCAGAGGGCGATGAAGTTCTAGATCCATTGAGACAAGCTCTAGACAGTAGCATGCAGTCCCACAACTTGTACCAGCATCCCCAGCGTCTGGCATTCCATGTTTCTGCTCCTGTGGCCTCCACGGTGCAACAAGCTAGCGGTTTACTTGGACCTCTGCCTCATCTTTCTTCTTTTGCG CTX 36.39 LQ 0 other ,, NM_138701,NM_138701,NM_138701 ,, ,, ,, ,, ,, ,, NM_001190981,NM_002184,NM_175767 ,, ,, ,, 1755,1938, 2574,2757,990 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001190981,NM_002184,NM_175767;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 MPLKIP chr7 40172641 - 3utr DGKI chr7 137198924 - intron > 0 12 74 342 0.000 0.920 0 60 0.000 0.390 74 85 983 15110 CAACAATACAGCAATACTCAAACATTCACAGGCAAAAAAGGAAGATACTTTTGTTAACATTTCTGAAATTCAACCTCGGCCACAAATAAACACAGAAATAGTCCAGAATGTCACAGGTCCAGGGCAGAGGACCAACATGGGCATTTTGTTTATGAGCAAGGTGGGTCTCAGAGGTGATCGGCGATCAGAGGGCGATGAAGTTCTAGATCCATTGAGACAAGCTCTAGACAGTAGCATGCAGTCCCACAACTTGTACCAGCATCCCCAGCGTCTGGCATTCCATGTTTCTGCTCCTGTGGCCTCCACGGTGCAACAAGCTAGCGGTTTACTTGGACCTCTGCCTCATCTTTCTTCTTTTGCGCTTCAGCCTGCGCATTCGCTTCTTCCTCCACTTGGCTCTCATGGCGCAGAGGTTTCCAAAAAAATG INS 36.39 LQ 0 other NM_138701 NM_004717 2248 3198 geneB_no_inframe_contig_found geneB_transcripts=NM_004717 MV4_11_RNAseq_1 LOC339862 chr3 18338142 - intergenic OSTF1 chr9 77761950 + 3utr > 3 1 323 76 0.000 0.760 122 7 0.050 0.010 324 310 286 676 CTTCACCTTCTGGGATACCAATAATTCAGGTATTTGGTTGCTTTATGGTGTTGCACATATCATGAAGGCTTTGTTCATTCCTTTTTTATTCTTTTTTAAAATTTTTGTCTGAGTAGGTTATTTCAAAAGACCTATCTTCAAGTTATGAGATTCTTTTTTTTGATCTAGTCTATTGTTGGAGCTTTTGAATGTATTTTGTCATTCAGTCAATGAATTCTTCAGTTTCAGAATTTGTTTGGTTCTTTTTTGTGATATCTATCTCTTTGGTAAATTTCACATTCATATTCTGAATTTTTTTTGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTAAAATGCTTTACCTCAATGGTTGAGATATTTTGAATGGATTTTTCAAGGG CTX 36.28 LQ 0 other 0 NM_001257177 NM_012383 645 geneB_no_inframe_contig_found geneB_transcripts=NM_012383;geneb_utr_codons=13 MV4_11_RNAseq_1 LOC158960 chrX 153656679 + 3utr PRPF3 chr1 150316911 + coding > 5 0 371 74 0.020 0.480 113 0 0.110 0.000 372 375 112 485 GTTCCTTCTGGGGCTGTGAGGGAAAGCCAGCTCCAGGCCTGTCTTCTGGCTTCTTCCGGTGGTTCCCAGCAATGCTCCGTGTTCCTTGGCTTGCAGAGGTGTCATTCCAATCTCTGCCTTCAGCTGCGTGCAGTGCTCTCCTCCCTGTGTCTGTCTCTTTTTCTCCTCCTGTATCAGGGAGGGTCCATCTGCAGGAAAAAGACACCACTTTTGCAATTTTGATGAAAAGGATTAAAACAGGGATTGGCCGGGTGCGGCGATGCGCGCCTGTAGTCCCACTTTTCCGGAGGCTGAGGCGGGAGGATCGCTTGAGCCCGGGGACTCGAGACCAGCCTGGCCAACATAGCTAGACCCCGTCTCTAAAGAAAAAAAAAGACAGAAAGCGCATGAAGAGGCCAACGCTGCCCGAAAACTCACAGCAGAACAGAGAAAGGTCAAGAAAATCAAAAAGACAGAAAGCGCATGAAGAGGCCAACGCTGCCCGAAAACTCACAGCAGAACAGAGAAAGGTCAG CTX 35.64 LQ 0 NLoss 3,0 , , , , , , , NM_004698,NM_004698 510,510 , tuple,tuple 1528,1528 2052,2052 , , , ; geneA_no_transcript_IDs_found;ERROR_geneB_multiple_matching_frames=NM_004698 geneB_transcripts=NM_004698 , , MV4_11_RNAseq_1 EPHA1-AS1 chr7 143112156 - 5utr TUBA1B chr12 49522521 - coding > 9 2 170 415 0.000 0.500 71 16 0.600 0.000 171 178 99 22279 CAGGTTCACAGCTTGTCAACTACCTTCTTGTCTCTTTTTCTTTAGTTTTCTCTTGCCTCTTCTTGAGATTGAAGCTTCATCCAAACATCCCTTTTAATCCAGAGGCTGGTGCTACTTTCAGCAGACTTTATCCTTAATTCCCTCAAACCCATCTTGCAAATAAACCTGTAATCCCAGACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTCGTAGAAACCTCGATATCGAGCGCCCAACCTACACTAACCTTAACCGCCTTATTAGCCAGATTGTGTCCTCCATCACTGCTTCCCTGAGATTTGATGGAGCCCTGAATGTTGACCTGACAGAATTCCAGACCAACCTGGTGCCCTACCCCCGCATCCACTTCCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATGCTTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGTTGTACCGTGGTGACGTGGTTCCCAAAGATGTCA CTX 35.50 LQ 0 NLoss 3 NM_006082 192 tuple 576 1356 geneA_no_transcript_IDs_found geneB_transcripts=NM_006082 MV4_11_RNAseq_1 OR2S2 chr9 35970925 - intron TNRC6A chr16 24835942 + 3utr > 4 1 328 113 0.660 0.000 31 13 1.000 0.060 329 337 13 34 AAAAGATTGGAGCTGAAGACCTAAAGTGCTTGCTTTTTGCCCGTTGACCAGATAAATAGAACTATCTGCATTATCTATGCAGCATGGGGTTTTTATTATTTTTACCTAAAGACGTCTCTTTTTGGTAATAACAAACGTGTTTTTTAAAAAAGCCTGGTTTTTCTCAATACGCCTTTAAAGGTTTTTAAATTGTTTCATATCTGGTCAAGTTGAGATTTTTAAGAACTTCATTTTTAATTTGTAATAAAAGTTTACAACTTGATTTTTTCAAAAAAGTCAACAAACTGCAAGCACCTGTTAATAAAGGTCTTAAATAATTAAAAAAAAAAAAAAAAAGGATGATTTAAAAGATGCTTTCTATCTCTGGGAAAAAGGAGCAGCATTTGGCCATGTTCTTTTGTTTTTATATTGCTGTCCCAAATCAAAGAGCATGGTTCTCAGGAAAACCAGTGCCGCAATTTA CTX 35.42 LQ 0 other NM_014494 5889 geneB_no_inframe_contig_found geneB_transcripts=NM_014494;geneb_utr_codons=13 MV4_11_RNAseq_1 LINC01500 chr14 59261740 + intron DEFB116 chr20 29899210 - intron > 5 0 312 74 0.670 0.810 295 1 0.330 0.010 313 310 42 0 AACGAAGTGGTAACCCGAGAATACACCATCAACATTCACAAGCGCATCCATGGAGTGGGCTTCAAGAAGCGTGCACCTCGGGCACTCAAAGAGATTCGGAAATTTGCCATGAAGGAGATGGGAACTCCAGATGTGCGCATTGACACCAGGCTCAACAAAGCTGTCTGGGCCAAAGGAATAAGGAATGTGCCATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCACCAAATAAGCTATATACTTTGGTTACCTATGTACCTGTTACCACTTTCAAAAATCTACAGACAGTCAATGTGGATGAAGATTCACCAAATAAGCTATATACTTTGGTTACCTATGTACCTGTTACCACTTTCAAAAATCTACAGA CTX 34.33 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 TMEM33 chr4 41962178 + 3utr SMC5-AS1 chr9 72832199 + intron > 4 0 140 83 0.000 0.830 198 1 0.010 0.000 141 143 714 1 GAAAAATTCATTCCCCTGTATTCAAGACCAAAGCACATAAATGCTAATGTAGGGCTCAGAGGGGAAATACAGTTCTCCTGCATATTTGAGAAAATGTGAAGTCCTTTCAAGAAAATCTAATAAACATAATAATCATAGCCCCAGTTTCTTAATGCGAAATGCGAGTCGGCTTTCCTTTCCAAGAGGAATCCTCGGCAGATAAACTGGACTGTCCTCTACAGAAGGAAGG CTX 33.66 LQ 0 other NM_018126 NM_153267 1652 2061 geneB_no_inframe_contig_found geneB_transcripts=NM_153267 MV4_11_RNAseq_1 RALGAPB chr20 37207188 - 3utr CALR,MIR6515 chr19 13054904 + 3utr ? 0 53 72 134 0.000 0.000 1 300 0.000 0.270 72 78 76 1520 CTTGGCAACATACTGAAATTCATACAAACTGTATATATGATTTCAAGCAAATAATGATACTGCTTATTTTTTTTTTTTTTTTTTTTTTAAACTGGTATTTTATCTTTGATTCTCCTTCAGCCCTCACCCCTGGTTCTCATCTTTCTTTATCAACCTCTTTTCTTGCCTCTCTCCCCTTCTCTCCTCTCTTCGCCCCCCTCCACCCTTGGGGGCTG CTX 33.47 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 UBL5 chr19 9940782 + 3utr HMGB1 chr13 31035118 - 3utr > 3 0 101 223 0.480 0.660 98 0 0.010 0.000 102 99 459 9341 TAGATGAGAATCCTCATCTTCCTGCCCCGCTTTCCTCTCCCATCCTCATCCCCCACACTGGGATAGATGCTTGTTTGTAAAAACTCACCTTAATAAAGACTCTGTAATTGCAAAAAAAAAAAAAGTTGCAGCTGTTTTGTTGACATTCTGAATGCTTCTAAGTAAATACAATTTTTTTTATTAGTATTGTTGTCCTTTTCATAGGTCTGAAATTTTTCTTCTTGAGGGGAAGCTAGTCTTTTGCTTTTGCCCATTTTGAATCACATGAATTATTACAGTGTTTATCCTTTCATATAGTTAGCTAATAAAAAGCTTTTGTCT CTX 33.32 LQ 0 other , NM_001048241,NM_024292 , , , , , , NM_002128,NM_002128 , , , , 648,648 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_002128;geneb_utr_codons=13 , , MV4_11_RNAseq_1 IGH chr14 106444552 - 5utr CGGBP1 chr3 88101690 - 3utr > 2 1 146 132 0.800 0.000 12 106 1.000 0.010 151 165 91 953 ACGGGCCGGGACAGTGTGGCCGAGCAGATGGCTATGTGCTAGAGGGCAAAGAGTTGGAGTTCTATCTTAGGAAAATCAAGGCCCGCAAAGGCAAATAAATCCTTGTTTTGTCTTCACCCATGTAATAAAGGTGTTTATTGTTTTGTTCCCACAGTTAAGATGCCTGCCTGTAAGAATTTGCACATGAATGTTAATGGAAAACACAAAACTTAAGATGGCCCAAAACAAAAGCCACAAACAGTTCATCATTTGGTGCTTAGTCTTTGTAAGGGCTCTCTGTGGTTTGACTTACTCCAG CTX 33.20 LQ 1 other ,, ,, ,, ,, ,, ,, ,, ,, NM_001008390,NM_001195308,NM_003663 ,, ,, ,, ,, 504,504,504 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001008390,NM_001195308,NM_003663;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 HNRNPU chr1 245021541 + coding ZNF12 chr7 6730736 - coding ? 0 4 73 134 0.000 0.000 1 179 0.000 0.080 73 73 2305 74 CGGGAACAGTGGCCGTCCAGCAAGAACTTCCTTACTGATTTTGAAGGCAACGCCAAGATCTTGTCCATTCTTATGCTTCTCTCAGATGTCCTATCTCACTATACATCATCGAATTCATTCAGGAGAGAAACCCTTTGAATGTAATGAGTGTGGAAAAGCCTTCTCTCGGATGTCATACCTCACTGTACATTATAGAACTCATTCAGG CTX 32.93 LQ 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 CCSER1 chr4 91759815 - intron CLN6 chr15 68500331 - 3utr > 0 10 280 64 0.800 0.360 0 163 0.000 0.080 285 313 334 342 AAAGAAACGATTGAACAGGAGAAGCAAGCAGGCGAATCGTAATGAGGCGTGCGCCGCCAATATGCACTGTACATTCCACAAGCATTGCCTTCTTATTTTACTTCTTTTAGCTGTTTAACTTTGTAAGATGCAAAGAGGTTGGATCAAGTTTAAATGACTGTGCTGCCCCTTTCACATCAAAGAACTACTGACAACGAAGGCCGCGCCTGCCTTTCCCATCTGTCTATCTATCTGGCTGGCAGGGAAGGAAAGAACTTGCATGTTGGTGAAGGAAGAAGTGGGGTGTGCCTCGTGTGCGTGGATTCGTGTGTGGGTGTGTGTCTTGTATATGTGTGCGCAGAGTGCATCATTTTCAGACTCTACTATTTCCGTCAAGT CTX 32.60 LQ 0 other NM_001145065 NM_017882 936 geneB_no_inframe_contig_found geneB_transcripts=NM_017882;geneb_utr_codons=13 MV4_11_RNAseq_1 UBE2D3 chr4 103718516 - 3utr ANKRD28 chr3 15838167 - intron > 0 3 76 145 0.810 0.020 1 167 0.000 0.260 76 80 2838 54 CTCAGAAGTATGCCATGTGATGCTACCTTAAAGTCAGAATAACCTGCATTATAGCTGGAATAAACTTTAAATTACTTTTAAAAAAAAAAAAAAAACCCAGCTGTGCTGTTCAGAGAATGTTTGTAAGTGTTGTACAGAAGAGGAGGAAAAACTACTTGTGCTCTTCCAACTGTGACTTTTATCACATAGCTTGGAATTTAGTGTTTTAAAAGATCGAATGAGGCG CTX 31.73 LQ 2 other ,,,,,,,,,,,,,,,,,,, NM_001300795,NM_001300795,NM_003340,NM_003340,NM_181886,NM_181886,NM_181887,NM_181887,NM_181888,NM_181888,NM_181889,NM_181889,NM_181890,NM_181890,NM_181891,NM_181891,NM_181892,NM_181892,NM_181893,NM_181893 ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, NM_001195098,NM_015199,NM_001195098,NM_015199,NM_001195098,NM_015199,NM_001195098,NM_015199,NM_001195098,NM_015199,NM_001195098,NM_015199,NM_001195098,NM_015199,NM_001195098,NM_015199,NM_001195098,NM_015199,NM_001195098,NM_015199 ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,28,,28,,28,,28,,28,,28,,28,,28,,28,,28 2700,3162,2700,3162,2700,3162,2700,3162,2700,3162,2700,3162,2700,3162,2700,3162,2700,3162,2700,3162 ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ;;;;;;;;;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001195098,NM_015199;geneb_utr_codons=13 ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, MV4_11_RNAseq_1 TARP chr7 38297564 - 5utr GOLGA6L17P,GOLGA6L9 chr15 83041004 + intron > 1 13 156 139 0.490 0.750 94 16 0.010 0.060 156 164 1184 29307 ATTAAACCTCACACCCTAGAACAACAACATGTCGTAGTAATTCTGACTAAAATTGCTGGAAATTTATAGATGAATTTAGGGTGTATTGGCCTCTTTATGATAGAAGCTTTTTATTCATCAATGTATGTTTCTCCATTTATTTAGGTTTTATTTTATTTAAGTGTCATCTGGCATCTTCTTTCTGTAGCCAGGTAACTCTTAGATCTTATGCAGCAGCCTGCTGAACAGTTCCTTTTTCAGAGACATAGATAGCAGCCAAAAATGTCCTTATATCCTTGGTATTAACTGTTGTGGCTTACTGAA CTX 31.66 LQ 0 other NM_001291420 geneB_CDS_mapping_exception=NM_001291420:-2;geneB_no_inframe_contig_found geneB_transcripts=NM_001291420;geneb_utr_codons=13 MV4_11_RNAseq_1 NA chr11 39801044 - intergenic NA chr11 39692361 - intergenic ? 12 12 120 54 0.000 0.000 243 630 0.800 0.480 120 120 14 24 TCTGAAGTTTTGGAGGCTAGAAGTAAAGAAGTCAAGGTGTTGTAAGGGGAGTGCTGTCACTAAAACAGGTTATTTGATAATTATCAAGCACTGTTCCAAGAATGAGGATTTCAGTATTAGGAATTCAGGAGCAGTTTGGTTTGACAGTTCTGATTCTAGGATTTTCATGAGGT DEL 31.50 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 MOCS1 chr6 39926597 + intron ATM chr11 108239016 + 3utr > 0 3 78 285 0.800 0.000 1 152 0.010 0.080 83 77 0 248 GGAAGACCCAAGGAAATCCGGAATTTCGCACCAGAGGACCCACCACGTCCTCGCTTCGACATCTTGAACGCCGGAAAAAAAAAAAAAAAAAAAGGTTTTGGCAAGCTGGAACTCTTTCTGCAAATGACTAAGATAGAAAACTGCCAAGGACAAATGAGGAGTAGTTAGATTTTGAAAATATTAATCATAGAATAGTTGTTGTATGCTAAGTCACTGACCCATATTATGTACAGCATTTCTGATCTTTACTTTGCAAGATTAGTGATACTATCCCAATACACTGCCGGAGAAATCAGAATTTGGAGAAATAAGTTGTCCAAGGCAAGAAGATAGTAAATTATAAGTACAAGTGTAATATGGAC CTX 31.40 LQ 0 other NM_000051 geneB_CDS_mapping_exception=NM_000051:-2;geneB_no_inframe_contig_found geneB_transcripts=NM_000051;geneb_utr_codons=13 MV4_11_RNAseq_1 RAB4A,SPHAR chr1 229440146 + 5utr SMOC1 chr14 70352525 + intron > 0 10 74 233 0.620 0.960 1 135 0.000 0.130 74 82 255 305 TTTACGTGATCCACACTTGAAATACTAGATCAGTAGACATTCACTAATATACCAAAATAAAATGAAAAATTGAGCTCTCTGCTTCTTCTCTTGCTTTGTCTCTGGTCTGTACTTGTGGGCCAGCTTAAGCAGCTGAGTAGCTGTTTGGCGGTCCAGGGCCTGGGTGAACTGGTTAATCGCAGGAGGCACTTTCAGCCGCTTATAGAGGATGGCTCTCTGCCGCTGCAACCTGATATAGCGGGGCCATTTCACAAAGCGGGTGAGGTCTCTTTTGGGCTGGATGTCCTGTCCAATGCCAAAATTCTTAGGCCTTTT CTX 31.12 LQ 0 other ,,,,, NM_001271998,NM_001271998,NM_004578,NM_004578,NM_006542,NM_006542 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001034852,NM_022137,NM_001034852,NM_022137,NM_001034852,NM_022137 ,,,,, ,,,,, ,,,,, 99,99,99,99,99,99 1308,1305,1308,1305,1308,1305 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001034852,NM_022137 ,,,,, ,,,,, MV4_11_RNAseq_1 LTN1 chr21 30370380 + intron ATM chr11 108239016 + 3utr > 0 3 78 285 0.800 0.000 1 152 0.000 0.080 83 77 3 248 GGAAGACCCAAGGAAATCCGGAATTTCGCACCAGAGGACCCACCACGTCCTCGCTTCGACATCTTGAACGCCGGAAAAAAAAAAAAAAAAAAAGGTTTTGGCAAGCTGGAACTCTTTCTGCAAATGACTAAGATAGAAAACTGCCAAGGACAAATGAGGAGTAGTTAGATTTTGAAAATATTAATCATAGAATAGTTGTTGTATGCTAAGTCACTGACCCATATTATGTACAGCATTTCTGATCTTTACTTTGCAAGATTAGTGATACTATCCCAATACACTGCCGGAGAAATCAGAATTTGGAGAAATAAGTTGTCCAAGGCAAGAAGATAGTAAATTATAAGTACAAGTGTAATATGGAC CTX 30.40 LQ 0 other NM_000051 geneB_CDS_mapping_exception=NM_000051:-2;geneB_no_inframe_contig_found geneB_transcripts=NM_000051;geneb_utr_codons=13 MV4_11_RNAseq_1 STXBP3 chr1 109352125 + 3utr MIR3134,PTBP3 chr9 115044953 - intron > 3 0 83 72 0.000 0.000 136 1 0.750 0.000 84 80 8 90 TTTAAAGAACACAATTTTATATAATTTTGAAATCATGTATGTTTAAATTAGAAAACCAAAAATCATGAACATTCTAAGAGAAAAATTTCCCAAATAGTAAAAAAAAAAATAAAAATAAACTTAACCCATTGATCAAAGAAGTTGTCACAAG CTX 30.35 LQ 0 other ,,,,, NM_007269,NM_007269,NM_007269,NM_007269,NM_007269,NM_007269 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001163788,NM_001163790,NM_001244896,NM_001244897,NM_001244898,NM_005156 ,,,,, ,,,,, ,,,,, 35,128,4,35,137,119 1575,1668,1374,1644,1677,1659 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001163788,NM_001163790,NM_001244896,NM_001244897,NM_001244898,NM_005156 ,,,,, ,,,,, MV4_11_RNAseq_1 NA chr2 138584529 - intergenic NA chr2 138476986 - intergenic ? 7 7 93 89 0.000 0.000 290 310 0.780 0.540 93 93 8 12 AAAGCTCACAAGCAATGGCCCTTCTCAAAGGAATTAATGAATAGGAACAGTAAGGAATGACTAAGAGGGTCTTCTTGTGGAGACAAATGATTGAGATGTACCAGTGCTATTTACTCAGAGAGAAAAGGCCATGTGAAGATACAGTGAGAAGGCGGCCATATGCAAGCCAAGGAGAGGAGCC DEL 30.00 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr8 130560480 - intergenic LINC00977 chr8 130229652 - 3utr > 5 5 307 77 0.000 0.000 154 146 0.090 0.170 307 307 194 39 CTCGGATGTCACTTCAACTCTGAGCCTTAGAACTTGTCAACTGCAAAGTGGGGCACTTCACCGAGCTACATCATTGAGCTACTTCACTGAGCTACTTCATTGAATTGGGAAAATTAAAGGAGCAAATATGGGAGAAGGATTTGGCCCATAGTAAACACTATGACTGTCCGTCTTCTGCCATCTTTCAGTAGACCCAGTGGAATTATATGAAGGTTGATAGGCACTTAAACCAAGAATATATGAACATCTATTCTGTGCAAGATGTGTGCATTGAACTCAGTCCAGGACTGAAGGGGACAGGAGGAAGGATAAGTCAATTGAGCTTCACTTCTCTAATTGAAATCACCGTGCTGATGGAGTCTGTCTGTGGAAATGAAAGGTGG DEL 30.00 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 FNTA chr8 42940928 + 5utr BCL2L13 chr22 18187757 + intron > 3 0 131 81 0.680 0.740 115 1 1.000 0.000 134 137 12 153 ACAGTTTGGTTAAGTAAGCAGGGAATACAGTCGTTCCATCCGAGCTGGTCTGCACACTCACATTATCTTGCTATCACTGTAACCAACTAATGCCAAAAGAACGGTTTTGTAATAAAATTATAGCTGTATCTAAAAACAAAAAAAAAAAAAAGTATAGGAGAAACTGAAGAATGTACACTTTTTTAGAGGGCACATTTTGCTGTAAATCTGGAAATTTG CTX 29.90 LQ 0 other ,,,,,,,,, NM_002027,NM_002027,NM_002027,NM_002027,NM_002027,NM_002027,NM_002027,NM_002027,NM_002027,NM_002027 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, NM_001270726,NM_001270727,NM_001270728,NM_001270729,NM_001270730,NM_001270731,NM_001270732,NM_001270734,NM_001270735,NM_015367 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, 672,528,265,114,114,114,373,386,229,600 1530,1386,279,972,972,972,387,516,243,1458 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001270726,NM_001270727,NM_001270728,NM_001270729,NM_001270730,NM_001270731,NM_001270732,NM_001270734,NM_001270735,NM_015367;geneb_utr_codons=5 ,,,,,,,,, ,,,,,,,,, MV4_11_RNAseq_1 NA chrX 36698022 + intergenic NA chrX 36811638 + intergenic ? 8 8 148 35 0.000 0.000 126 594 0.210 0.220 148 148 37 35 CTTATAACAATAAATATTTATTTATTTAGCACATGAAAAAAACAGACATGGGTTGGCATAGGCTCTCTGCTATCAGTTGAACCAGAGATTCAGGCTGCTTTCATCTTGTAGTTCCACCATCTCAACACGGGCTCTCCATGTTTGATGTATGCATCAGACACTGCTTAAGGTATTTGTGATCC DEL 29.70 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 FTL chr19 49470082 + 3utr NA chr5 165809624 - intergenic > 0 10 133 161 0.660 0.750 0 85 0.010 0.350 139 152 14257 334 TGGGCTGGGCGAGTATCTATTCGAAAGGCTCACTCCCACGCACGACTAAGATCCTTCTGAGCCCAGCGACGTCTGAAGGGCCCCTTGCAAAGTAAGAGGGCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTGCTCTTCCGATCTGTTGCTTTTTGGTGATTAGTCAAAGAGACCAAATCCCATATCCTCGTCCGACTCCTCCGACTCTTCCTTGGCTTCAACCTTAGCTGGGGCTGCAGCAGCAGCAGGAGCAGCTGTGGTGGCAGCAGCCACAGGGGCAGCAGCCACAAAGGCAGATGGATCAG CTX 28.90 LQ 0 other NM_000146 geneB_no_transcripts MV4_11_RNAseq_1 FNTA chr8 42940928 + 5utr TOMM20 chr1 235275038 - 3utr > 3 5 131 79 0.680 0.750 115 16 1.000 0.000 134 140 12 2258 ACAGTTTGGTTAAGTAAGCAGGGAATACAGTCGTTCCATCCGAGCTGGTCTGCACACTCACATTATCTTGCTATCACTGTAACCAACTAATGCCAAAAGAACGGTTTTGTAATAAAATTATAGCTGTATCTAAAAACAAAAAAAAAAAAAAGTATAGGAGAAACTGAAGAATGTACACTTTTTTAGAGGGCACATTTTGCTGTAAATCTGGAAATTTG CTX 28.75 LQ 0 other NM_002027 NM_014765 438 geneB_no_inframe_contig_found geneB_transcripts=NM_014765;geneb_utr_codons=13 MV4_11_RNAseq_1 WAC-AS1 chr10 28812516 + 3utr GDI2 chr10 5807742 - 3utr ? 4 11 136 127 0.750 0.000 14 174 0.050 0.140 138 138 143 5005 ACAAAAAGTAATTTCAAAGAGTTAAGATTTCTTCAGCAAAATAGATGATTCACATCTTCAAGTCCTTTTTGAAATCAGTTAATATTATTCTTTCCCCATTTCCATCTGAATGACTGCAGCAATAGTTTTTTGTTTTTTTTTTTTTGTGAAGTTAAACAAACATTGGGATACCGACACAGACAACTTGAGACAGTTTTTTTAATCTTTTAATCAGTGTAGCTATGTTCTTCTGCTGGTCAACAGCTGGATCCATACAGGTTGTGTGGCCTCTGTTC ITX 28.75 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 G6PD chrX 153763469 + coding PI4KA chr22 21073034 - coding ? 3 0 155 85 0.000 0.660 164 1 0.020 0.000 156 154 207 98 TGGACAGCCGGTCAGAGCTCTGCAGGTCCCTCCCGAAGGGCTTCTCCACGATGATGCGGTTCCAGCCTATCTGGCTCATGCAGGACTCGTGAATGTTCTTGGTGACGGCCTCGTAGACGGTCGGGGGCAAGGCCAGGTAGAAGAGGCGGTTGGCCAGCGGGAGTTTGATTTCTTTAACAAGATCACCAACGTGTCGGCTATCATCAAGCCCTACCCTAAAGGCGACGAGAGAAAGAAG CTX 27.88 LQ 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 BCAS4 chr20 49456913 - intron CLN6 chr15 68500331 - 3utr > 0 10 147 64 0.830 0.360 0 162 0.000 0.080 160 188 15 342 CCGATCTAAGAGGTTGGATCAAGTTTAAATGACTGTGCTGCCCCTTTCACATCAAAGAACTACTGACAACGAAGGCCGCGCCTGCCTTTCCCATCTGTCTATTTATCTGGCTGGCAGGGAAGGAAAGAACTTGCATGTTGGTGAAGGAAGAAGTGGGGTGTGCCTCGTGTGCGTGGATTCGTGTGTGGGTGTGTGTCTTGTATATGTGTGCGCAGAGTGCATCATTTTCAGACTCTACTATTTCCGTCAAGT CTX 27.54 LQ 1 other ,, NM_001010974,NM_017843,NM_198799 ,, ,, ,, ,, ,, ,, NM_017882,NM_017882,NM_017882 ,, ,, ,, ,, 936,936,936 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_017882;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 PPP1R12B chr1 202440924 - intron PITX1 chr5 134364263 - 3utr > 0 25 273 136 0.910 0.000 0 299 0.400 0.090 274 271 10 1172 AGGAAACACAAGAAGAAACGCCTGGTGCAGAGCCCCAATTCCTACTTCATGGATGTGAAATGCCCAGGATGCTATAAAATCACCACGGTCTTTAGCCATGCACAAACGGTAGTTTTGTGTGTTGGCTGCTCCACTGTCCTCTGCCAGCCTACAGGAGGAAAAGCAAGGCTTACAGAAGGATGTTCCTTCAGGAGGAAGCAGCACTAAAAGCACTCTGAGTCAAGATGAGTGGGAAACCATCTCAATAAACACATTTTGGATAAAAAAAAAAAAAAAAAAAAAAAAAGCAAAAAGACGTCGGAGAAAAGTGCCGCGAAAAAAAGGATGAGTTGCAATTTCTCTCGGGATGGGGCGGGGGGTGGGTGTGTGTTCCCCCGGGGCCCGGAGGCCCCCTCCGCGGGGGGCAC CTX 26.91 LQ 0 other ,, NM_002481,NM_032103,NM_032104 ,, ,, ,, ,, ,, ,, NM_002653,NM_002653,NM_002653 ,, ,, ,, ,, 945,945,945 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_002653;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 AZU1 chr19 832013 + 3utr ATP6V1G1 chr9 117360335 + 3utr > 0 19 185 329 0.000 0.020 0 26 0.060 0.020 185 193 134 2892 CTTCCGAGACTGGATCGATGGTGTTCTCAACAACCCGGGACCGGGGCCAGCCTAGGGGGGCCTGTGACCTCCCATGGAGCCCAGCCCCGCCCTCCACACCTCCGGCGCTCCGCACCCACCTCCCACGGCCCCGCCCCTGCCCCCGCTCCGGCCAGAGGGGCCCTGGCTGTAATAAAGAAGCCGATTCTAGTTTAAAAAAAAAAAAAAACCACATAACAATTCTTTGAAGAAAGGAAGGGATTAAATAATTTTTTTCCCTAACACTTTCTTGAAGGTCAGGGGCTTTATCTATGAAAAAGTAGTAAATAGTTCTTTGTAACCTGTGTGAAGCAGCAGCCAGCCTTAAAGTAGTCCATTCTTGCTAATGGTTAGAACAGTGAATACTAGTGGAATTGTTTGGGCTGCTTTTAGTTTCTCTTAATCAAAATTACTAGATGATAGAATTCAAGAACTTGTTACATGTATTACTTGGTGTATCGATAATCATTTAAAAGTAAAGACTCTGTCATGCATTTTTCCCCAAN CTX 26.00 LQ 0 other NM_001700 NM_004888 357 geneB_no_inframe_contig_found geneB_transcripts=NM_004888;geneb_utr_codons=13 MV4_11_RNAseq_1 FNTA chr8 42940928 + 5utr GDPD4 chr11 77025753 + intron > 3 0 135 78 0.670 0.750 100 1 1.000 0.000 139 140 12 2 ACAGTTTGGTTAAGTAAGCAGGGAATACAGTCGTTCCATCCGAGCTGGTCTGCACACTCACATTATCTTGCTATCACTGTAACCAACTAATGCCAAAAGAACGGTTTTGTAATAAAATTATAGCTGTATCTAAAAACAAAAAAAAAAAAAAGTATAGGAGAAACTGAAGAATGTACACTTTTTTAGAGGGCACATTTTGCTGTAAATCTGGAAATTTG CTX 25.00 LQ 0 other NM_002027 geneB_no_transcripts MV4_11_RNAseq_1 NA chr13 82264577 + intergenic FBXW5 chr9 139835788 - coding > 0 4 146 141 0.870 0.000 0 192 0.000 0.040 153 151 183 372 TGGAGATGAAGATGAGGAAGGTGAGTCAGCTACGGGAAAGGGGGCAGCTGAAGATGATGAAGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACTAAAAAAAAAAAGGCCGCCGGGCTCTGCGTGCGCACCGCGCCTACACGCCCAACGACGAGTGCTTCTTCATCTTCCTGGACGTCAGCAGGGACTTCGTGGCCAGCGGGGCGGAGGACCGGCACGGCTACATCTGGGACCGCCACTACAACATCTGTCTG CTX 24.96 LQ 0 NLoss 0 NM_018998 458 tuple 1372 1701 geneA_no_transcript_IDs_found geneB_transcripts=NM_018998 MV4_11_RNAseq_1 HNRNPU chr1 245017232 + 3utr KDM5B chr1 202696720 - 3utr ? 4 2 122 129 0.520 0.000 26 104 0.000 0.040 144 144 3197 191 AGACGTGTGCTCTTCCGATCTCTTCTACATACACTCCATCTTCTCTATCTTAGTTCCAAGTTTTAGTTTTCAATCCCAATTATACCAATTCCATTGTTATTTTAAGAAAAAACCTTCCCAGTTATTGTCAGAAACTATGATTTAGCTTACCTTTTCCTATTCTGTTGCCAATTTTTGTTTTCCCCACATTCTATAGCCATAAACCTGAAGATGAGTAAAACTGGTGGGTCTTTAATAAAACAACAACAAAAACAGCAGTTTGTGATATAGCAG ITX 24.96 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr5 165809624 + intergenic RNF24 chr20 4005181 - intron > 7 0 161 122 0.750 0.660 72 0 0.350 0.000 162 175 334 2 CTGATCCATCTGCCTTTGTGGCTGCTGCCCCTGTGGCTGCTGCCACCACAGCTGCTCCTGCTGCTGCTGCAGCCCCAGCTAAGGTTGAAGCCAAGGAAGAGTCGGAGGAGTCGGACGAGGATATGGGATTTGGTCTCTTTGACTAATCACCAAAAAGCAACAGATCGGAAGAGCAAGCTGCCTATTGGCTGGAGGGAGAGGCTTAGGCAGAAGCCCTATTACTTTGCAAGGGGCCCTTCAGAAGTCGCTGGGCTCAGAAGGCTCTTAGTCGTGCTTGAGAGTGAGCCTTTCGAAGAGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTA CTX 24.48 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr9 120845436 + intergenic SYNCRIP chr6 86329135 - coding > 0 5 75 147 0.880 0.000 1 199 0.000 0.010 78 82 77 1199 CCCTTTGATTGATTTCATGTAATCTTTGATGTACTTCTTGTAGGCTTCTTTTGTGAAACTTGTTTCCTGAGGTTATGGCAAAGGTAAAAGTGCTGTTTGTACGCAACCTTGCCAATACTGTAACAGAAGAGATTTTAGAAAAGGCATTTAGTCAGTTTGGGAAACTGGAACGAGTGAAGAAGTTAAAAGATTATGCGTTCATTCATTTTGATGAGCGAGATGGTGCTGTTTGTACGCAACCTTGCCAATACTGTAACAGAAGAGATTTTAGAAAAGGCATTTAGTCAGTTTGGGAAACTGGAACGAG CTX 23.88 LQ 2 NLoss 3,3,3,3,3,3,3,3,3,3,3,3,3,3 ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, NM_001159673,NM_001159673,NM_001159674,NM_001159674,NM_001159675,NM_001159675,NM_001159676,NM_001159676,NM_001159677,NM_001159677,NM_001253771,NM_001253771,NM_006372,NM_006372 239,239,302,302,302,302,337,337,337,337,185,185,337,337 ,,,,,,,,,,,,, blat,tuple,blat,tuple,blat,tuple,blat,tuple,blat,tuple,blat,tuple,blat,tuple 715,715,904,904,904,904,1009,1009,1009,1009,553,553,1009,1009 1395,1395,1584,1584,1767,1767,1686,1686,1689,1689,1233,1233,1872,1872 ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, ;;;;;;;;;;;;; geneA_no_transcript_IDs_found;ERROR_geneB_multiple_matching_frames=NM_001159673;ERROR_geneB_multiple_matching_frames=NM_001159674;ERROR_geneB_multiple_matching_frames=NM_001159675;ERROR_geneB_multiple_matching_frames=NM_001159676;ERROR_geneB_multiple_matching_frames=NM_001159677;ERROR_geneB_multiple_matching_frames=NM_001253771;ERROR_geneB_multiple_matching_frames=NM_006372 geneB_transcripts=NM_001159673,NM_001159674,NM_001159675,NM_001159676,NM_001159677,NM_001253771,NM_006372 ,,,,,,,,,,,,, ,,,,,,,,,,,,, MV4_11_RNAseq_1 TFB1M chr6 155578995 - coding SUB1 chr5 32591672 + coding > 1 6 135 119 0.000 0.680 74 12 0.010 0.000 146 139 290 11049 CTTCCGATCTGCTCTCCATCTCACACTTTAAGAGCCTCTGTGATGTATACAGAAAAATGTGTGATGAAGACCCACAACTCTTTGCATATAATTTCAGAGAAGAACTCAAGCGAAGAAAAAGCAAAAATGAAGAAAAAGAAGAGGAACAAGCAAGTTGCTCCAGAAAAACCTGTAAAGAAACAAAAGACAGGTGAGACTTCGAGAGCCCTGTCATCTTCTAAACAGAGCAGCAGCAGCAGAGATGATAACATGTTTCAGATTGGGAAATAAGAGAGAAAAGAGATC CTX 23.68 LQ 0 Fusion NM_016020 1016 NM_006713 76 384 geneB_blat_issues=too_many_mismatches;geneB_anchor_fail_but_found_blat_hit=NM_006713 geneB_transcripts=NM_006713 MV4_11_RNAseq_1 MCTP1 chr5 94051073 - intron NA chr8 62116115 - intergenic > 2 1 157 225 0.000 0.920 84 16 0.060 0.250 158 146 77 3 GTTAGAACCTAATACAGCATATACTACCGTATAAAATATATGACTAGACTATTATTTTTAAGAAGGTGGTCAGGCTTAGTTTGTATATGATCTAAGCAGTATCCACATAGTGGATTCCAGGTTTTGGTGGTGGTGTTTTTTTTTTTTTTTTTTTTTTACTTTATTAAAATACTGAGTTTTATTTCACATGTATATTTTTGTCTCCCCACCATTTCCATGTCTGACCACCGCTACTACTATGTCCTATCATAACATTCCATACATACTTAAAACCAAGCAAAGGGTGGAGTTCCATCTTTAAAAACTAAACGGCATTTTGGACAACACATTCTTGGCAATAGAACCTGGACAACATTTATCAAACACGGTAGGG CTX 22.72 LQ 0 other ,, NM_001002796,NM_001297777,NM_024717 ,, ,, ,, 1948,1690,2611 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 LIMD2 chr17 61775657 + 3utr TUBA1B chr12 49521870 - coding > 2 1 151 76 0.000 0.740 87 15 0.010 0.000 159 151 439 26685 CCGATCTGGTAGATGGGGAGACGTGGGGGCCACACAGTCTCCGGTGGCAGTGAGGGAGCTTGGGACCCTGAGGGGGGCATGCTGACTCCTTGCTGGAGAAAAGGCACCTAGATAGGGGAGCTGGGCTTGGGGGCCTCCCAGGGGGTCCTGGGGTGAGGGGATGGAGGAAGGCGAGTTTTCAGAGGCCCGTGAAGATATGGCTGCCCTTGAGAAGGATTATGAGGAG CTX 22.62 LQ 0 NLoss 0,3 NM_030576, , 5, , , , , NM_006082,NM_006082 409,409 4, blat,blat 1227,1227 1356,1356 50, , RSGRWGDVGATQSPVAVRELGTLRGAC*LLAGEKAPR*GSWAWGPPRGSWGEGMEEGEFSEAREDMAALEKDYEE, LIMD2:NM_030576[1,5]-TUBA1B:NM_006082[4,4]; geneB_transcripts=NM_006082 , 1, MV4_11_RNAseq_1 NA chrX 36698022 + intergenic NA chrX 36921062 + intergenic ? 0 15 98 207 0.000 0.000 0 448 0.000 0.440 98 98 37 33 GGTTGGCATAGGCTCTCTGCTATCAGTTGAACCAGAGATTCAGGCTGCTTTCATCTTGTAGTTCCACCATCTCAACACGGGCTCTCCATGTTTGATGCTTCCGTCCATGGGTGTCAGTGCAAATTCTCTGGGTTCACTTCTCCATAGATTTTTTTGTTATTTTCAAAAGCTTGTCTTGCTTCTTTGAATGTGCAGACGACTTCTGTGTACTCGCCCTCAATCTTGGCTAGCATTTTAATACTGAATTGGCTTTTTTCCTGTGAAGAAAACTCCTGGACGAGTTTCTGCTTGAGCACCAGCGCGGN DEL 22.40 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 ROMO1 chr20 34288899 + 3utr LRRFIP1 chr2 238674081 + 3utr > 1 2 60 407 0.000 0.000 22 124 0.270 0.030 60 63 119 574 AACTACATCTGTCCCTTCCCATCAATCCCAGCCCATGTACTAATAAAAGAAAGTCTTTGACTAAAAAAAAAAAAAAAAAAAAAAAAGTTTTTGAACCTTAAAATACTTTGTTTGAATTTCTAATCATCATTCAAAAGAGCAGTAAAAAATGGTTACTTGTTCTTGTACAAGCTACTAATTAGACTATAGTAGGATATTTTAAAGAGCTGAATCACTTTTGGTATTTTGGTATAAATATTTTCATTTGTTATGTCCCAGTATATTCTTACTGGAAAATTCTTGTTTTGATCTGCCTGAAGAAAATATCTGTTTTCTATATAAAAAAATTTTTTAAAATAATTGTAAAGTTAGATTTAAAATTGTAAAATATAAAATCACAAAGGAATGTACCTTATGAATGTTGTTGACATTTTATGAAATTATGTGGATTCATATTACTGTTACAAGATAGAATTGAATGCAAAAAGACC CTX 22.07 LQ 2 other ,,,, NM_080748,NM_080748,NM_080748,NM_080748,NM_080748 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_001137550,NM_001137551,NM_001137552,NM_001137553,NM_004735 ,,,, ,,,, ,,,, 1460,722,,, 1923,1185,2427,2259,2355 ,,,, ,,,, ,,,, ;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001137550,NM_001137551,NM_001137552,NM_001137553,NM_004735;geneb_utr_codons=13 ,,,, ,,,, MV4_11_RNAseq_1 TMEM165 chr4 56292342 + 3utr C5orf34 chr5 43496351 - intron > 2 4 128 128 0.000 0.930 102 14 0.130 0.090 127 135 37 160 AGGACACCCAATATAAAAACAGTCAATATTTGACAATGTGGAATTACCAAATTAAAAGAGAATACTATGAATGTATTCATATTTTTTCTATATTGAATAAACAATGTAACATAGATAACAATATAAATGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGAGACTTTATCAAAAACATGATTACAGGGACATCTCAGGCGTCCTGTGGTGTCCTAA CTX 21.14 LQ 0 other NM_018475 NM_198566 geneB_CDS_mapping_exception=NM_198566:-2;geneB_no_inframe_contig_found geneB_transcripts=NM_198566 MV4_11_RNAseq_1 SIX2 chr2 45223878 + intergenic NT5M chr17 17286669 + intergenic ? 2 46 112 72 0.520 0.680 87 70 1.000 0.250 153 166 6 796 GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTCAATAATCTGGAGAATCTTGTCTTTGGCAAAGGATTCCAAGCAAAGATCTTCCCTGAGATTCTCCTGTGCCTCCTGTTGGCTCTCTTTGCATCTGGCCTCATCCACCGAGTCTGTGTCACCTCGCCGACTGATTCCAAGTCCCCAGGAGGGCTTTATTTTTTCTTTTCAACATCCTGTTCTGCGGCTTCCTTGGCTCTTTTTGACTGCCGACTGATTCCAAGTCCCCAGGAGGGCTTTATTTTTTCTTTTCAACATCCTTTTCTGCGGCTTCCTT CTX 19.91 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 HIPK3 chr11 33378558 + 3utr NA chr21 21363008 - intergenic > 1 3 70 75 0.000 0.040 7 152 0.010 1.000 70 76 1006 5 ATTTTGGTGAGTGTCAAAATAAGAATTTATGGTGTATTACTGTCGATTCACTTTGAATTAAAATATATATTGCAAAAAAAAAAAAAAAAATCAAGACTGGGAGAAAATATTTGCAAACTACATATCCATTAAAGGCCTTGTATTTAAAAAA CTX 19.20 LQ 1 other ,,, NM_001048200,NM_001278162,NM_001278163,NM_005734 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_transcripts ,,, ,,, MV4_11_RNAseq_1 TARP chr7 38297564 - 5utr UBE2Q2P2 chr15 82664463 + intron > 1 9 156 123 0.490 0.800 94 12 0.010 0.000 156 162 1184 28702 ATTAAACCTCACACCCTAGAACAACAACATGTCGTAGTAATTCTGACTAAAATTGCTGGAAATTTATAGATGAATTTAGGGTGTATTGGCCTCTTTATGATAGAAGCTTTTTATTCATCAATGTATGTTTCTCCATTTATTTAGGTTTTATTTTATTTAAGTGTCATCTGGCATCTTCTTTCTGTAGCCAGGTAACTCTTAGATCTCATTCATCAGCCTGCTGAACAGTTCCTTTTTCAGACACATAGATACCATCTAACAATTTCCTGATCTCCTTGTCTTTAAATTCTTTCGTTGAAGGACTC CTX 18.80 LQ 0 other NM_001164465 geneB_CDS_mapping_exception=NM_001164465:-2;geneB_no_inframe_contig_found geneB_transcripts=NM_001164465;geneB_transcript_strand_disagree=NM_001164465 MV4_11_RNAseq_1 BCAS4 chr20 49457117 - intron PYCARD chr16 31214040 - 5utr > 10 1 144 41 0.830 0.000 58 109 0.200 0.070 156 168 118 1330 CTTCCGATCTAGATCGAGAAATTCGATAAGTCGAAACTGAAGAAGACAGAGACGCAAGAGAAAAATCCACTGCCTTCCAAAGAAACGATTGAACAGGAGAAGCAAGCAGGCGAATCGTAATGAGGCGTGCGCCGCCAATATGCACTGTACATTCCAGAACGGAAGAGCCCGGGGATCCTGGAGCCATGGGGCGCGCGCGCGACGCCATC CTX 18.53 LQ 1 other ,,,,, NM_001010974,NM_001010974,NM_017843,NM_017843,NM_198799,NM_198799 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_013258,NM_145182,NM_013258,NM_145182,NM_013258,NM_145182 ,,,,, ,,,,, ,,,,, ,,,,, 588,531,588,531,588,531 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_013258,NM_145182;geneb_utr_codons=10 ,,,,, ,,,,, MV4_11_RNAseq_1 PRKACB chr1 84610231 + coding RPF1 chr1 84955316 + coding > 6 6 71 84 0.000 0.000 166 134 0.050 0.020 71 71 64 554 GATCAGAAAACAGCTCTGGAAAATGACAGCCTTCATTTCTCTGAACATACTGCCTTATGGGACAGATCAAGTCGCTTATGATGAAGCTACAGATGAATTTGCTTCTTACTTCAACAAACAGACTTCTCCCAAGATTCTCATCACAACATCAGAT DEL 18.41 LQ 0 Fusion 0,0,0,0,3 NM_001300916,NM_002731,NM_182948,NM_207578, ,,,, 1,1,1,1, ,,,, 187,,187,, ,,,, ,,,, NM_025065,NM_025065,NM_025065,NM_025065,NM_025065 123,123,123,123,123 4,4,4,4, tuple,tuple,tuple,tuple,tuple 367,367,367,367,367 1050,1050,1050,1050,1050 23,23,23,23, ,,,, IRKQLWKMTAFISLNILPYGTDQVAYDEATDEFASYFNKQTSPKILITTSD,IRKQLWKMTAFISLNILPYGTDQVAYDEATDEFASYFNKQTSPKILITTSD,IRKQLWKMTAFISLNILPYGTDQVAYDEATDEFASYFNKQTSPKILITTSD,IRKQLWKMTAFISLNILPYGTDQVAYDEATDEFASYFNKQTSPKILITTSD, PRKACB:NM_001300916[1,1]-RPF1:NM_025065[4,9];PRKACB:NM_002731[1,1]-RPF1:NM_025065[4,9];PRKACB:NM_182948[1,1]-RPF1:NM_025065[4,9];PRKACB:NM_207578[1,1]-RPF1:NM_025065[4,9]; geneB_transcripts=NM_025065 ,,,, 1,1,1,1, MV4_11_RNAseq_1 RAN chr12 131361599 - 3utr H2AFY chr5 134670619 - 3utr ? 9 0 374 77 0.020 0.000 36 0 0.140 0.000 376 363 427 7679 TGGCTGGTTAGAAACTGGTTCTGAATACAGCGTAACATACACAGCAATTCAGATCTTAAGAAACTCAACTGTTGCCAGTTAATACAGTAAGTAGAACTTTATTCAGCTTCACCCTTATTTCATTTTTCCATATATTTAAGTGATCCTTTCTATACCTTTTAAGGTAAGCAATCATCTCAAGATTATCAGACATCTAAAGAAAACTTTGGTAAACTGGACTATAGTAATCGTATGAGAAAAAAATAGCTCAAGATTCCTAACTGCTACAAGAATAGTGTTGATGGGATCAAACTCCTAATTATCCTAATAGACCTAATTCATTTTTAAATGTGGAAAATATGCAAGATAAATTAAATGCTTAGTTAAAAAAAAAAAAAAAGTTTCTCCTACTGGGAGGTGGGACCCCTTTCATTTTCAGTTTTGCTCATCTAGGGAAAATAAGGC CTX 18.00 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 C6orf211 chr6 151791236 + 3utr NA chr13 82264548 + intergenic > 6 0 144 78 0.000 0.890 162 1 1.000 0.000 145 140 11 348 TTTATATTCTTACACATTTTATTGGTCATTGTCACAGATAGTAAATACTAAAAATTTCAGGTCAGTTTGTTTTGAAACTGAAATTGGAAATAAATCTGGAAATGTTTTGTTGCACTAAAATAATAAAATGAATTGTACTGAAAAGTTAAACTAAAAAAAAAAAGGCCGCCGTGACCTATTCACCCTCCACTTCCCGTCTCAGAATCTAAACGTGGTCAC CTX 17.82 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 AKAP6 chr14 32954166 + intron JMJD1C chr10 65006985 - intron > 0 3 74 139 0.800 0.000 1 137 0.030 0.090 75 63 1 30 GTGATTTTCATATTGAATTGCAAATTCGAAGAAGCAGCTTCAAACCTGCCGGGGCTTCTCCCGCCTTTTTTTCCTCAGTCTAGCTAAATATTTATTGATTTTATCTATCTTTTCAAAATCCAGCTTTTCATTTTTTTAAAATTTTCTTCTGTTTTTTGTTTTTTTGTTTTTGTTTTTTTTTTTTTGTCTCAGTTTATTTCCG CTX 17.62 LQ 2 other , NM_004274,NM_004274 , , , 325,325 , , NM_001282948,NM_032776 , , , ,447 7077,7623 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001282948,NM_032776;geneb_utr_codons=13 , , MV4_11_RNAseq_1 PMS2P5 chr7 74294285 + intron PPP1CB chr2 29024299 + 3utr > 0 3 233 265 0.800 0.000 0 88 0.000 0.050 233 220 209 616 ATGCAACATCTAAAAGGAAGACAGGTGGAGCTTTTATTTATTTTTTATTTTATTTATTTTTTGAGACGCAGTCTCGCTGCATTACCCAACCTGGAGTGCAGTGGCACAATCACAGCTCACTGTAGCCTCAACCTCCTGGGTTCAAACAATCCTCCCACCTCAGCCTCTCAAGTAGCTGGGACTACAGGCTTACACCACCAAGCTTGGCTAATTTTTTTTTTTTTTTTTTTTTTAAAGACTAAATGTGAAAAAATAATCACTACTTAAGCTAATTAATATTGGTCATTAAATTTAAAGGATGGAAATTTATCATGTTTAAAAATTATTCAAGCACTCTTAAAACCACTTAAACAGCCTCCAGTCATAAAAATGTGTTCTTTACAAATATTTGCTTGGCAACACGACTTGAAATAAATAAAACTTTGTTTCTTAGGAGAAAATGATTCTGTAATTCCAGTGTCACTAATTTATATTGTTCTTTCCCC CTX 17.60 LQ 0 other , , , , , , , , NM_002709,NM_206876 , , , , 984,984 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_002709,NM_206876;geneb_utr_codons=13 , , MV4_11_RNAseq_1 NSUN5 chr7 72696568 + intergenic PPP1CB chr2 29024299 + 3utr > 0 3 200 265 0.800 0.000 0 86 0.040 0.050 210 198 190 616 TTTTTTTTTTTTTTTTTATTTTTTATTTTATTTATTTTTTGAGACGCAGTCTCGCTGCATTACCCAACCTGGAGTGCAGTGGCACAATCACAGCTCACTGTAGCCTCAACCTCCTGGGTTCAAACAATCCTCCCACCTCAGCCTCTCAAGTAGCTGGGACTACAGGCTTACACCACCAAGCTTGGCTAATTTTTTTTTTTTTTTTTTTTTTAAAGACTAAATGTGAAAAAATAATCACTACTTAAGCTAATTAATATTGGTCATTAAATTTAAAGGATGGAAATTTATCATGTTTAAAAATTATTCAAGCACTCTTAAAACCACTTAAACAGCCTCCAGTCATAAAAATGTGTTCTTTACAAATATTTGCTTGGCAACACGACTTGAAATAAATAAAACTTTGTTTCTTAGGAGAAAATGATTCTGTAATTCCAGTGTCACTAATTTATATTGTTCTTTCCCC CTX 17.20 LQ 0 other 0,0,0,0,0,0,0,0 NM_001168347,NM_001168347,NM_148956,NM_148956,NM_018044,NM_018044,NM_001168348,NM_001168348 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, NM_002709,NM_206876,NM_002709,NM_206876,NM_002709,NM_206876,NM_002709,NM_206876 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, 984,984,984,984,984,984,984,984 ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_002709,NM_206876;geneb_utr_codons=13 ,,,,,,, ,,,,,,, MV4_11_RNAseq_1 NA chr20 12539131 - intergenic HSD17B12 chr11 43877440 + 3utr > 0 35 109 444 0.990 0.000 1 1618 0.010 0.820 113 99 0 174 CGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTCAGTTTAAATGTATGTAAATATCGAAGCTATATGGTATGATTTATAAAGATAAATGGGCCAAAGTGTACATTGAGACTGGCAGCCATCTATGGTACCACTGAAACCCTGACCCAGAAAAGTGGCTTGCTTGGACACCCAGCTGCCTTTGTTTCTGCATTAAACCAATATTGATCACACATATGACACAGGCTAGTCCTATAAAAGTAATGACTTCATAGAAATGGCATTATAATTTTTAAGTTGATACTCTACAGGTAGCTATTGATATAATTAGTTTTAATAAAACATGCTGCAACCATGGTATACAACAAAAATACATTTCTTTGGTGATTGAAATTAAGGCCGTATTTACAATGACTTAATATAAGACTGACTTTTATCCTGCTTCATAACTTGTATGGAGAACTCACCAAGAAAGAATTCAATACTGTGAAATATGCA CTX 17.18 LQ 0 other NM_016142 939 geneB_no_inframe_contig_found geneB_transcripts=NM_016142;geneb_utr_codons=13 MV4_11_RNAseq_1 ABCD4 chr14 74760780 - intron CHTF8 chr16 69152515 - 3utr > 0 4 78 126 0.920 0.550 1 206 0.000 0.010 78 79 57 422 CTTGAATCCGGGAGGCAGAGGTTGCAGTAAGGCAAGATCCTGCCATTGCACTCCAGCCTGGGTGACAGAGCAAGACTCAGAAGCCTGCTGTGCTTTCGTCCCACAGCTTTCTGCCCATTGTTTCTTACTAGTTTCTTGAATTGTTCTTGTGGACTTTTCCTCAGGGATACATTGGCCTGCAGGTCCCAGTTCACATGTAGTCCCC CTX 16.48 LQ 0 other ,, NM_005050,NM_005050,NM_005050 ,, ,, ,, 720,720,720 ,, ,, NM_001039690,NM_001040146,NM_138612 ,, ,, ,, ,, 366,366, ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001039690,NM_001040146,NM_138612;geneb_utr_codons=13;geneB_transcript_strand_disagree=NM_138612 ,, ,, MV4_11_RNAseq_1 ATP5L chr11 118277783 + coding HMGB2 chr4 174255484 - 5utr > 0 4 73 152 0.750 0.000 0 178 0.000 0.180 84 82 10296 1220 CGCAGGTCGCCTGGTTCCTCCCACCCCTGCTGAGATCCCTAGAGCTATTCAGAGCCTGAAAAAAAATAGTCAATAGTGCTCAGAGGGAAGCGTCTCCGTTGGGTCCGGCCGCTCTGCGGGACTCTGAGGAAAAGCTCGCACCAGGTGGACGCGGATCTGTCAACATGGGTAAAGGAGACCCCAACAAGCCGCGGGGCAAAATGTCCTCGTACGCCTTCTTCGTGCAGACCTGCCAGATCG CTX 16.37 LQ 0 CLoss 0,0,0,3,0,3 NM_006476,NM_006476,NM_006476,,, ,56,,,, 2,2,2,,, ,tuple,,,, 184,184,184,,, ,20,,,, ,63,,,, NM_001130688,NM_001130688,NM_002129,NM_001130688,NM_001130688,NM_002129 -35,-35,-27,-35,-35,-27 1,1,1,,, blat,tuple,tuple,blat,tuple,tuple ,,,,, 630,630,630,630,630,630 54,30,29,,, ,91,,,, QVAWFLPPLLRSLELFRA*KKIVNSAQREASPLGPAALRDSEEKLAPGGRGSVNMGKGDPNKPRGKMSSYAFFVQTCQI,AGRLVPPTPAEIPRAIQSLKKNSQ*CSEGSVSVGSGRSAGL*GKARTRWTRICQHG*RRPQQAAGQNVLVRLLRADLPD,QVAWFLPPLLRSLELFRA*KKIVNSAQREASPLGPAALRDSEEKLAPGGRGSVNMGKGDPNKPRGKMSSYAFFVQTCQI,,, ATP5L:NM_006476[1,2]-HMGB2:NM_001130688[1,5];ATP5L:NM_006476[1,2]-HMGB2:NM_001130688[1,5];ATP5L:NM_006476[1,2]-HMGB2:NM_002129[1,5];;; ERROR_geneB_multiple_matching_frames=NM_001130688 geneB_transcripts=NM_001130688,NM_002129;geneb_utr_codons=13;not_inframe_due_to_intermediate_stop_codon ,NSQ*CSEGS,,,, 2,1,2,,, MV4_11_RNAseq_1 SNHG21 chr15 83425537 + 5utr TOMM20 chr1 235274931 + 3utr ? 1 4 277 145 0.000 0.660 96 12 0.060 0.000 278 288 206 1434 CATTCATCGCGCTTACATTTCTCCACCTCATTTGAAGAACGAGCTTCGTAGCCCACGGAGCTGAGGTATATGAGCTCCCTGAAAGCACAAAGCAGTTATTTCCATCTTCAGATCATTCAGAGATTATGAAGGCACAAACCCTGCCTTCAATTTGCTTATAGTCAAGTGGAGCAGACACAAGTCAATGATTGCAGTATAGCCACTGAAGTAATCTAAAAGAGGTGGGGAGGCCACAGCTTATGTGAATGACTTTCTCAGGAGTTATAAAGTGATACAGACTTACCCAGTGCTCAGTTTTCACAAACACAGTCAAGTCTATCAAATTTCCAGATTTACAGCAAAATGTGCCCTCTAAAAAAGTGTACATTCTTCAGTTTCTCCTATACTTTTTTTTTTTTGCCTATCTTTCAAAACTGAGCACTGGGTATTTTT CTX 16.32 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 PFKP chr10 3144150 - intron HSD17B12 chr11 43877440 + 3utr > 0 35 107 444 0.990 0.000 1 1618 0.000 0.820 107 99 188 174 CGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTCAGTTTAAATGTATGTAAATATCGAAGCTATATGGTATGATTTATAAAGATAAATGGGCCAAAGTGTACATTGAGACTGGCAGCCATCTATGGTACCACTGAAACCCTGACCCAGAAAAGTGGCTTGCTTGGACACCCAGCTGCCTTTGTTTCTGCATTAAACCAATATTGATCACACATATGACACAGGCTAGTCCTATAAAAGTAATGACTTCATAGAAATGGCATTATAATTTTTAAGTTGATACTCTACAGGTAGCTATTGATATAATTAGTTTTAATAAAACATGCTGCAACCATGGTATACAACAAAAATACATTTCTTTGGTGATTGAAATTAAGGCCGTATTTACAATGACTTAATATAAGACTGACTTTTATCCTGCTTCATAACTTGTATGGAGAACTCACCAAGAAAGAATTCAATACTGTGAAATATGCA CTX 16.18 LQ 0 other , NM_001242339,NM_002627 , , , , , , NM_016142,NM_016142 , , , , 939,939 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_016142;geneb_utr_codons=13 , , MV4_11_RNAseq_1 ANKRD17 chr4 74020464 - intron HSD17B12 chr11 43877440 + 3utr > 0 35 108 444 0.990 0.000 1 1618 0.000 0.820 113 99 51 174 CGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTCAGTTTAAATGTATGTAAATATCGAAGCTATATGGTATGATTTATAAAGATAAATGGGCCAAAGTGTACATTGAGACTGGCAGCCATCTATGGTACCACTGAAACCCTGACCCAGAAAAGTGGCTTGCTTGGACACCCAGCTGCCTTTGTTTCTGCATTAAACCAATATTGATCACACATATGACACAGGCTAGTCCTATAAAAGTAATGACTTCATAGAAATGGCATTATAATTTTTAAGTTGATACTCTACAGGTAGCTATTGATATAATTAGTTTTAATAAAACATGCTGCAACCATGGTATACAACAAAAATACATTTCTTTGGTGATTGAAATTAAGGCCGTATTTACAATGACTTAATATAAGACTGACTTTTATCCTGCTTCATAACTTGTATGGAGAACTCACCAAGAAAGAATTCAATACTGTGAAATATGCA CTX 16.18 LQ 0 other ,, NM_001286771,NM_032217,NM_198889 ,, ,, ,, 662,1001,1001 ,, ,, NM_016142,NM_016142,NM_016142 ,, ,, ,, ,, 939,939,939 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_016142;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 LRRFIP2 chr3 37176658 + intron ANKRD28 chr3 15838167 - intron ? 0 3 77 145 0.810 0.020 1 167 0.000 0.260 80 80 50 54 CTCAGAAGTATGCCATGTGATGCTACCTTAAAGTCAGAATAACCTGCATTATAGCTGGAATAAACTTTAAATTACTTTTAAAAAAAAAAAAAAAACCCAGCTGTGCTGTTCAGAGAATGTTTGTAAGTGTTGTACAGAAGAGGAGGAAAAACTACTTGTGCTCTTCCAACTGTGACTTTTATCACATAGCTTGGAATTTAGTGTTTTAAAAGATCGAATGAGGCG ITX 15.86 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 C12orf79,BTG1 chr12 92537720 + 3utr EIF5AL1 chr10 81273170 + 3utr ? 1 3 143 135 0.000 0.670 33 20 0.120 0.060 144 139 223 36 CTGGGAGAAACTGAAACCACCCTAGGACTTCCCTCCCTAGCAAATAAAGTGATCATTTACTTGGACTCACAGGCTATTAAAATTAATCATTGAAAGGTACTGTCCAAACTATGGCACTGTCACTTAAAATTTTTTTTTTTTTTTTTTTTTTTAAATTCAATCTGGAATCAGAAAGCGGTGGATTCTGGCAAATGGTCCTTGTGCCCTCCCCACTCATCCCTGGTCTGGTCCCCTGTTGCCCATAGCCCTTTACCCTGACCACCCCCCCAACAGACTG CTX 15.45 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr16 72698791 - intergenic NA chr16 72557309 - intergenic ? 7 7 82 142 0.000 0.000 136 164 0.470 0.500 82 82 14 13 CTCGTATTTGAATTTGTGGCGCTTGGTGTCCGCGAGTTGCCGAATGAAGCTGAGCGTCTCAGTGGAACCAGGGATCTCAGGGACTGAAGCCTTAGGCTATGGCAGAAGTTGGGCGCCTGAAGTACACGTGGAAATATGCCAACTGAACATTGGACTACCACGTCAAGGGTCTCCTACCCCTGGGCCATGGATCAATACCAGTCTGTGACCTGTTAGGAACCGG DEL 15.00 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 ZDHHC14 chr6 157786370 + intron SLITRK1 chr13 84479342 - intron > 0 15 70 295 0.670 0.990 1 552 0.000 0.330 71 71 0 45 GTACACTTTGGCCCATTTATCTTTATAAATCATACCATATAGCTTCGATATTTACATACATTTAAACTGAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAT CTX 14.95 LQ 1 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr7 10493041 - intergenic GPBP1L1 chr1 46093374 - 3utr > 0 3 75 169 0.910 0.000 1 166 0.000 0.010 75 83 393 472 GCCAATTTTAAATAGTTTTATTTAAGACATTGCATTTTCCACTTACAATACAGTGTTTATAAAGTGCAATGTTATGGTGGAGGTGTAAAATATTTGGATATAGGAAATGTTGTGTTATTCTTGCAGCCTTGATATTCAGGGTGGATTGTAAAATATAAATTTTTGTGAGATTTCAAAGATTAAGATTATTTTGATAACATTATTTACAGATTTAAAAGATGTGGTTATCACAAGTCTCGAGGGGGAAACTAC CTX 14.94 LQ 2 other NM_021639 1425 geneB_no_inframe_contig_found geneB_transcripts=NM_021639;geneb_utr_codons=13 MV4_11_RNAseq_1 STEAP1B chr7 22551680 + intron ITGB1BP1 chr2 9558811 - coding > 0 5 128 209 0.900 0.000 0 149 0.060 0.050 160 164 8 275 GACTGGAGTTCAGACGTGTGCTCTTCCGATCTGGTGGACTTGCCCGAATCTACGTGTCCAATGACGACAATGTTGATATGAGTCTTTTCCTTTCCCATTTTGGCTTTTAGGGGTAGTTTTCACGACACCTGTGTTCTGGCGGCAAACCCGTTGCGAAAAAAACGACACAGTAGTAGCAGTTCCCAAAGTAGCGAAATCAGTACTAAGAGCAAGTCTGTGGATTCTAGCCTTGGGGGTCTTTCACGATCCAGCACTGTGGCCAGCCTCGACACAGATTCCACCAAAAGCTCAGGACAAAGCAACAATAACTCAGATACCTGTGCAGAATTTCCAATAAAATACGTTGGCGCCCTTCACAAACTGAACCTCTCCG CTX 14.90 LQ 0 NLoss 0,0 , , , , , , , NM_004763,NM_022334 6,6 , tuple,tuple 16,16 603,453 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_004763,NM_022334 , , MV4_11_RNAseq_1 RALY chr20 32664888 + coding EPHA5 chr4 66439464 + intron > 6 0 435 99 0.010 0.870 107 0 0.030 0.000 436 431 1759 271 CTAAGCCTGACAGACCCAAGGGGCTAAAGAGAGCAGCATCTGCCATATACAGTGGCTACATCTTTGACTATGATTACTACCGGGACGACTTCTACGACAGGCTCTTCGACTACCGGGGCCGTCTGTCGCCCGTGCCAGTGCCCAGGGCGGTCCCTGTGAAGCGACCCCGGGTCACAGTCCCTTTGGTCCGGCGTGTCAAAACTAACGTACCTGTCAAGCTCTTTGCCCGCTCCACAGCTGTCACCACCAGCTCAGCCAAGATCAAGTTAAAGAGCAGTGAGCTGCAGGCCATCAAGACGGAGCTGACACAGATCAAGTCCAATATCGATGCCCTGCTGAGCCGCTTGGAGCAGATCGCTGCGGAGCAAAAGGCCAATCCAGATGGCAAGAAGAAGGGTGATGGAGGTGGCGCCAGCGGCGGCGGCGGCGGTGGTGGTGGCAGGAACGGCGGTACCCGGGTGGTTAAACTTCGCAAAATGCCTAGATATTATCCTACTGAAGATGTGCCTCGAAAGCTGTTGAGCCACGGCA CTX 13.91 LQ 0 CLoss ,,,,,,,,, NM_007367,NM_007367,NM_007367,NM_007367,NM_007367,NM_016732,NM_016732,NM_016732,NM_016732,NM_016732 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, 665,665,665,665,665,713,713,713,713,713 ,,,,,,,,, ,,,,,,,,, NM_001281765,NM_001281766,NM_001281767,NM_004439,NM_182472,NM_001281765,NM_001281766,NM_001281767,NM_004439,NM_182472 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001281765,NM_001281766,NM_001281767,NM_004439,NM_182472;geneB_transcript_strand_disagree=NM_001281765;geneB_transcript_strand_disagree=NM_001281766;geneB_transcript_strand_disagree=NM_001281767;geneB_transcript_strand_disagree=NM_004439;geneB_transcript_strand_disagree=NM_182472 ,,,,,,,,, ,,,,,,,,, MV4_11_RNAseq_1 HNRNPD chr4 83274982 - 3utr ZBTB7A chr19 4047698 - 3utr > 6 0 132 70 0.490 0.000 168 0 0.070 0.000 133 134 267 41 TCAGAATCAATTTGTGTTTTATGCCCTTTCCCCCAGTATTGTAGAGCAAGTCTTGTGTTAAAAGCCCAGTGTGACAGTGTCATGATGTAGTAGTGTCTTACTGGTTTTTTAATAAATCCTTTTGTATAAAAAAAAAAAAAATCACCCACCACCCCCCCAAAAACACAAAAAAAGAAAATCTATCTATATACAGATATCTATAT CTX 13.79 LQ 0 other ,,, NM_001003810,NM_002138,NM_031369,NM_031370 ,,, ,,, ,,, ,,, ,,, ,,, NM_015898,NM_015898,NM_015898,NM_015898 ,,, ,,, ,,, ,,, 1755,1755,1755,1755 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_015898;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 PDCD5 chr19 33078331 + 3utr FAM120A chr9 96327957 + 3utr > 2 3 395 52 0.490 0.000 62 26 0.600 0.010 396 401 15 1311 GCAGAAATGAGAAACAGTATCTTAGCCCAAGTTCTGGATCAGTCGGCCCGGGCCAGGTTAAGTAACTTAGCACTTGTAAAGCCTGAAAAAACTAAAGCAGTAGAGAATTACCTTATACAGATGGCAAGATATGGACAACTAAGTGAGAAGGTATCAGAACAAGGTTTAATAGAAATCCTTAAAAAAGTAAGCCAACAAACAGAAAAGACAACAACAGTGAAATTCAACAGAAGAAAAGTAATGGACTCTGATGAAGATGACGATTATTGAACTACAAGTGCTCACAGACTAGAACTTAACGGAACAAGTCTAGGACAGAAGTTAAGATCTGATTATTTACTTTGTTTATTGTCTATATGCCTTTTAAAAAAATAAACTTGTTATGCAAAATAAAAAAAAAAAAAAAAACCCTTTGATCTTAAAAAAAAAAAAACCACCCCCCCCTTCTGTAG CTX 13.26 LQ 0 other , NM_004708,NM_004708 , , , , , , NM_001286722,NM_014612 , , , , 3354,3357 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001286722,NM_014612;geneb_utr_codons=13 , , MV4_11_RNAseq_1 CCDC64 chr12 120397291 + intron NT5M chr17 17286886 + intergenic > 0 7 76 235 0.880 0.670 1 107 0.000 0.010 80 91 2 814 GACTTCTAAAAGGAACTATGTCTGGAAGGCTGTGGTCCAAGGCCATTTTTGCTGGCTATAAGCGGGGTCTAAGGAACCAACCGGGGTGGCCAGTTTCAGTTCTTCAGCAGAACTGTCTCCCTTCTTGGGGGCCGAGGGCTTCCTGGGGAAGAGGATGAGTTTGGAGCGGTACTCCTTCAGCCGCTGCACGTTGGCCTGCAGGGACTCCGTGGACTTGTTCCGCCTCCTCGGATCCACAGAAATGCCGATGGTCCGGGCCACCTTCTTGTGAATGCCGTCCACCCTGAGCTCCTCCAGGCTGAAGCCGCGGCCGGCGCGCACCTTCG CTX 12.84 LQ 0 other 0 NM_020201 geneB_no_transcripts MV4_11_RNAseq_1 SYNCRIP chr6 86329137 + coding TPT1,SNORA31 chr13 45914197 - coding ? 5 0 147 78 0.000 0.880 199 0 0.010 0.000 226 230 1199 141113 CTCGTTCCAGTTTCCCAAACTGACTAAATGCCTTTTCTAAAATCTCTTCTGTTACAGTATTGGCAAGGTTGCGTACAAACAGCACCATCTCGCTCATCAAAATGAATGAACGCATAATCTTTTAACTTCTTCACTCGTTCCAGTTTCCCAAACTGACTAAATGCCTTTTCTAAAATCTCTTCTGTTACAGTATTGGCAAGGTTGCGTACAAACAGCACTTTTACCTTTGCCATAACCTGCAGGAAACAAGTTTCACAAAAGAAGCCTACAAGAAGTACATCAAAGATTACATGAAATCAATCAAAGGG CTX 11.94 LQ 1 Fusion unhandled orientation ? MV4_11_RNAseq_1 NA chr11 39502274 + intergenic NA chr11 39692220 + intergenic ? 5 6 31 144 0.000 0.000 238 68 0.290 0.320 31 31 16 18 GAGGCATTCCAGAAGTTTTGTTTTGTTTTCTTGACAATCTTTTGGTGAGGTACCTTGGGGATGGATCCTCCAACTTCAAACCATCAGATGCCTGCAGCTCCAGCTGAGATCTGACGCCAACCTCATGAAAATCCTAGAATCAGAACTGTCAAACCAAACTGCTCCTGAATTCCTA DEL 11.90 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 EPS15L1 chr19 16524256 - intron TTC17 chr11 43472732 + coding > 0 3 75 239 0.890 0.070 1 108 0.000 0.020 78 86 106 126 GTCTTGACGAGGTGGTCAGTGAACTCCTGATAGGGAGACTTGGTGAATACAGTCTCCTTCCAGAGGTCGGAGAGTCAGTTAACAGAGGTATTACAAAATCTCGGCCAAGACCAATATCCACAACAGTCGCTTGAACAGATTGGCACCCGAATTGCCAAAGTTTTGGAAAAGAACCAGACGTCCTGGGTCCTCTCCAGCATGGCAGCCCTCTACTGGAGGGTGAAAGGCCAAGGAAAGAAGGCAATCGACTGCCTCCGCCAGGCTCTGCACTATGCGCCACACCAGATGAAGGATGTGCCCCTGATTAGCCTGGCCAACATCTTGC CTX 11.88 LQ 0 NLoss 0,0,0,0,3 NM_001258374,NM_001258375,NM_001258376,NM_021235, ,,,, 13,13,13,13, ,,,, 1266,1266,1266,1266, ,,,, ,,,, NM_018259,NM_018259,NM_018259,NM_018259,NM_018259 983,983,983,983,983 21,21,21,21, blat,blat,blat,blat,blat 2947,2947,2947,2947,2947 3426,3426,3426,3426,3426 23,23,23,23, ,,,, VLTRWSVNS**GDLVNTVSFQRSESQLTEVLQNLGQDQYPQQSLEQIGTRIAKVLEKNQTSWVLSSMAALYWRVKGQGKKAIDCLRQALHYAPHQMKDVPLISLANIL,VLTRWSVNS**GDLVNTVSFQRSESQLTEVLQNLGQDQYPQQSLEQIGTRIAKVLEKNQTSWVLSSMAALYWRVKGQGKKAIDCLRQALHYAPHQMKDVPLISLANIL,VLTRWSVNS**GDLVNTVSFQRSESQLTEVLQNLGQDQYPQQSLEQIGTRIAKVLEKNQTSWVLSSMAALYWRVKGQGKKAIDCLRQALHYAPHQMKDVPLISLANIL,VLTRWSVNS**GDLVNTVSFQRSESQLTEVLQNLGQDQYPQQSLEQIGTRIAKVLEKNQTSWVLSSMAALYWRVKGQGKKAIDCLRQALHYAPHQMKDVPLISLANIL, EPS15L1:NM_001258374[1,13]-TTC17:NM_018259[21,24];EPS15L1:NM_001258375[1,13]-TTC17:NM_018259[21,24];EPS15L1:NM_001258376[1,13]-TTC17:NM_018259[21,24];EPS15L1:NM_021235[1,13]-TTC17:NM_018259[21,24]; geneB_transcripts=NM_018259 ,,,, 0,0,0,0, MV4_11_RNAseq_1 GOLGA6L10 chr15 82664904 + intron C6orf120 chr6 170103149 + 3utr > 0 4 113 139 0.930 0.000 0 163 0.010 0.080 152 153 28197 153 TTGACTGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGGGGAAGTGAGCATACACAGACCTCATCTTGTAACGGAAGCCCAGTGTAACACCCTTGATCATGTTCTGTACATGACTACAAATAGTCCGAACGGTAGCCAGTTCCTTTCTGAGGGATATAAAACCCTCCATCTGTGAAGCTGATTGCAGTTTGCTGTGAACCTTGCTACTTGTACTTGGTTGAAGTTCTAGGTACCTTTAGTCAAGGGATGGAAAAATAAAGCCATACGCAGTTTTGTTACCTCAGTTACCN CTX 11.41 LQ 0 other NM_001164465 NM_001029863 576 geneB_no_inframe_contig_found geneB_transcripts=NM_001029863;geneb_utr_codons=13 MV4_11_RNAseq_1 RFXANK chr19 19307855 + coding NA chr14 77435043 - intergenic > 3 0 171 72 0.000 0.760 190 1 0.020 0.010 172 183 994 0 GGCTCAGACACTGTGGTCCTCAGTCTCTTTCCCTGCACCCCTGAGCCTGTGAATCCTGAACCGGATGCCAGTGTTTCCTCTCCACAGGCAGGCAGCTCCCTGAAGCACTCCACCACTCTCACCAACCGGCAGCGAGGGAACGAGGTGTCAGCTCTGCCGGCCACCCTGGACTCCCTGTCCATCTCGGAGACAGAGGCCATGGCGCGGGCGAGTGTAGGGCTGGCGCTGCCGGACGCGGTGCTAGTCGCCGGATGAAGTGAG CTX 11.17 LQ 0 CLoss ,,, NM_001278727,NM_001278728,NM_003721,NM_134440 ,,, ,,, ,,, 271,268,271,268 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_transcripts ,,, ,,, MV4_11_RNAseq_1 NBPF11,NBPF8,NBPF14,NBPF9,NBPF25P chr1 148176990 - intron ZRANB2 chr1 71530135 - 3utr > 2 1 127 97 0.860 0.070 120 6 0.030 0.000 152 152 197 1268 CCCTACGCGACGCTCTTCCGATCTGGGAGAACTGGTGAGTCTTTTCAAGAGGAGGAAGTCCCTCAAAAGGGGCTGTGTTTCGCAAACGGCGCCCCAAAAGGGCTGAAATACTTCGATCTGGAAGAAAAAGACTCAGGCACTGAGGGAAGTGGGATATATTTTCCTTTCTGACACATAATTTGGGGCAAAAAAGAAAGTCTTAAGAGTTTATCTTTTGTCTGCTGATACGGTTGCTTGATAAAGCCATCTCACATTGTTGACCAATG DEL 11.16 LQ 0 other , NM_001037501,NM_001037501 , , , , , , NM_005455,NM_203350 , , , , 963,993 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_005455,NM_203350;geneb_utr_codons=13 , , MV4_11_RNAseq_1 LINC01138 chr1 143745213 - intron ZRANB2 chr1 71530135 - 3utr > 2 1 127 97 0.860 0.070 120 6 0.080 0.000 152 152 74 1268 CCCTACGCGACGCTCTTCCGATCTGGGAGAACTGGTGAGTCTTTTCAAGAGGAGGAAGTCCCTCAAAAGGGGCTGTGTTTCGCAAACGGCGCCCCAAAAGGGCTGAAATACTTCGATCTGGAAGAAAAAGACTCAGGCACTGAGGGAAGTGGGATATATTTTCCTTTCTGACACATAATTTGGGGCAAAAAAGAAAGTCTTAAGAGTTTATCTTTTGTCTGCTGATACGGTTGCTTGATAAAGCCATCTCACATTGTTGACCAATG DEL 11.16 LQ 0 other , , , , , , , , NM_005455,NM_203350 , , , , 963,993 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_005455,NM_203350;geneb_utr_codons=13 , , MV4_11_RNAseq_1 NBPF11,NBPF8,NBPF14,NBPF9,NBPF25P chr1 147932742 - intron ZRANB2 chr1 71530135 - 3utr > 2 1 127 97 0.860 0.070 120 6 0.060 0.000 152 152 113 1268 CCCTACGCGACGCTCTTCCGATCTGGGAGAACTGGTGAGTCTTTTCAAGAGGAGGAAGTCCCTCAAAAGGGGCTGTGTTTCGCAAACGGCGCCCCAAAAGGGCTGAAATACTTCGATCTGGAAGAAAAAGACTCAGGCACTGAGGGAAGTGGGATATATTTTCCTTTCTGACACATAATTTGGGGCAAAAAAGAAAGTCTTAAGAGTTTATCTTTTGTCTGCTGATACGGTTGCTTGATAAAGCCATCTCACATTGTTGACCAATG DEL 11.16 LQ 0 other , NM_001037501,NM_001037501 , , , , , , NM_005455,NM_203350 , , , , 963,993 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_005455,NM_203350;geneb_utr_codons=13 , , MV4_11_RNAseq_1 NBPF20,NBPF9,NBPF8,NBPF25P,NBPF10,NBPF12 chr1 144521766 - intron ZRANB2 chr1 71530135 - 3utr > 2 1 127 97 0.860 0.070 120 6 0.070 0.000 152 152 280 1268 CCCTACGCGACGCTCTTCCGATCTGGGAGAACTGGTGAGTCTTTTCAAGAGGAGGAAGTCCCTCAAAAGGGGCTGTGTTTCGCAAACGGCGCCCCAAAAGGGCTGAAATACTTCGATCTGGAAGAAAAAGACTCAGGCACTGAGGGAAGTGGGATATATTTTCCTTTCTGACACATAATTTGGGGCAAAAAAGAAAGTCTTAAGAGTTTATCTTTTGTCTGCTGATACGGTTGCTTGATAAAGCCATCTCACATTGTTGACCAATG DEL 11.16 LQ 0 other , NM_001278267,NM_001278267 , , , , , , NM_005455,NM_203350 , , , , 963,993 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_005455,NM_203350;geneb_utr_codons=13 , , MV4_11_RNAseq_1 EMBP1 chr1 121313603 + 5utr CRLS1 chr20 5976926 + intron > 0 3 71 69 0.520 0.000 1 166 0.000 0.010 77 83 1 31 CTGAAAGGGTGCAATACAGCTTTCTTGAAATGTGTATTGAACGGATGAATGTATAAATAAAAATTAAATTTTGTAAAAAAAAAAAAAAAAAAAAAAATGGAGAAAGTAGATAGTAGTATAAATATAGTGAAGTCTTTAAAAGCTAGGAGTTA CTX 10.78 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 PPA2 chr4 106406753 - intron SLC27A5 chr19 59003891 - intergenic > 0 4 147 143 0.940 0.000 0 178 0.000 0.270 155 144 29 124 CCGATCTCCTGGATGGTTCAGGATAATCACCTGAGCAGTGAAGCCAGCTGCTTCCATTGGTGGGTCATTTTTGCTGTCACCAGCAACGTTGCCACGACGAACATCCTTGACAGACACATTCTTGACATTGAAGCCCACATTGTCCCCAGGAAGAATTCTTGAAGTATCGGTGGATGCCCTCATGGGAGGACCAGTGACTCTCACGAAAAGCAGCCTTTGTTGTCCAAGTGAATAAATAATGCCTTTCATGTAAGCATGTGAGAAATACAGGCAGATGCTGTAGCGAT CTX 10.68 LQ 0 other 0 NM_012254 geneB_no_transcripts MV4_11_RNAseq_1 CLTC chr17 57768073 + coding ETV1 chr7 13911467 + intergenic > 5 0 254 76 0.010 0.910 105 1 0.020 0.010 255 262 733 0 TGAAGAACTCCTGCAGTGGTTTTTGCAGGAAGAAAAAAGAGAGTGCTTTGGAGCTTGTCTGTTTACCTGTTACGATCTTTTAAGGCCAGATGTCGTCCTAGAAACTGCATGGAGGCACAATATCATGGATTTTGCCATGCCCTATTTCATCCAGGTCATGAAGGAGTACTTGACAAAGGTGGATAAATTAGATGCTTCAGAATCACTGAGAAAAGAAGAAGAACAAGCTACAGAGACACAACCCATTGTTTATGGTCAGCCCGGGAGCGGCCAAAATGAAGTTTAATCCCTTTGTGACTTCCGACCGAAGCAAGAATCGCAAAAGGCATTTCAATGCACC CTX 10.44 LQ 3 CLoss 0,0,0,0,0,0,0,0,0,0,0,0,0,0 NM_001288653,NM_001288653,NM_001288653,NM_001288653,NM_001288653,NM_001288653,NM_001288653,NM_004859,NM_004859,NM_004859,NM_004859,NM_004859,NM_004859,NM_004859 ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, 4915,4915,4915,4915,4915,4915,4915,4903,4903,4903,4903,4903,4903,4903 ,,,,,,,,,,,,, ,,,,,,,,,,,,, NM_001163149,NM_001163148,NM_004956,NM_001163152,NM_001163151,NM_001163147,NM_001163150,NM_001163149,NM_001163148,NM_004956,NM_001163152,NM_001163151,NM_001163147,NM_001163150 ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, ;;;;;;;;;;;;; geneB_no_transcripts ,,,,,,,,,,,,, ,,,,,,,,,,,,, MV4_11_RNAseq_1 LOC339862 chr3 18058204 + coding SATB1 chr3 18383739 + intergenic > 10 3 144 65 0.000 0.000 145 102 0.010 0.040 144 144 498 288 AGAAGACAGTCACAGTAGTCCAGATAAGAGATGCATATGTTATCAATCGCCATGTGAAGAAGATGCTTGCTTCCCCTTTGCCTTCTGCCATGATTGTGAGTTTCGCGAGGCCTCCACAGCCATGCTTCCTGTACTGCAGAACTAAATTGACAAGCTGAATCTAAAATTCATAATGTAAGTACCCAGAATCACTGAAACAAGTTAGAAG DEL 10.30 LQ 0 CLoss 0,0,0 NM_001257177,NM_001257177,NM_001257177 ,, ,, ,, 223,223,223 ,, ,, NM_002971,NM_001195470,NM_001131010 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 RMI1 chr9 86618971 + 3utr TMEM167B chr1 109598053 - intron > 13 0 405 183 0.000 0.980 504 1 1.000 0.000 406 393 73 0 TTTTTATTTTGCTGATTATAATATTTGGTATATTTAAGGTAATCTAGTTAACTAGATGCTATTTCATAGATTATATTGAATGATTTAAAACTTTATTTTCAAGGATAGTTTATTTTAAATGGCATATTGAAAACATCATTATTAAGATCCAGTAGGTAGGACATTTATTGGATTAAAATGAAGCATTTATCTATGTCTTTAGGTGTCATTGTTCCCTTTCTGAATTAGCTGTACATATAAGCCTTCCTTTGGTTTTAAGTACTGATTTTTTTTTAAAAAAAAGAGGGACTGTTTACCATTCTTCCACTGTGCTGTTATAAAGTTGTATTTGAAAGGTAATGTTGTTTTTATTAATCTTTTGTCTTAAAATAATTTAAAGTGCTTTGAATTTTAAAACATTAAACAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCCTCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAG CTX 10.08 LQ 0 other NM_024945 geneB_no_transcripts MV4_11_RNAseq_1 DENND5B chr12 31549476 - intron GPBP1L1 chr1 46093374 - 3utr > 0 3 74 169 0.910 0.000 1 166 0.020 0.010 75 83 0 472 GCCAATTTTAAATAGTTTTATTTAAGACATTGCATTTTCCACTTACAATACAGTGTTTATAAAGTGCAATGTTATGGTGGAGGTGTAAAATATTTGGATATAGGAAATGTTGTGTTATTCTTGCAGCCTTGATATTCAGGGTGGATTGTAAAATATAAATTTTTGTGAGATTTCAAAGATTAAGATTATTTTGATAACATTATTTACAGATTTAAAAGATGTGGTTATCACAAGTCTCGAGGGGGAAACTAC CTX 10.06 LQ 3 other NM_144973 3256 NM_021639 1425 geneB_no_inframe_contig_found geneB_transcripts=NM_021639;geneb_utr_codons=13 MV4_11_RNAseq_1 NA chrX 36698022 + intergenic NA chrX 36982319 + intergenic ? 0 5 97 155 0.000 0.000 0 194 0.000 0.190 97 97 37 26 GTTGGCATAGGCTCTCTGCTATCAGTTGAACCAGAGATTCAGGCTGCTTTCATCTTGTAGTTCCACCATCTCAACACGGGCTCTCCATGTTTGATGTTTTTTGTTATTTTCAAAAGCTTGTCTTGCTTCTTTGAATGTGCAGACGACTTCTGTGTACTCGCCCTCAATCTTGGCTAGCATTTTAATACTGAATTGGCTTTTTTCCTGTGAAGAAAACTCCTGGACGAGTTTCTGCTTGAGCACCAGCGCGGN DEL 9.70 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 PPRC1 chr10 103867222 + intron PITX1 chr5 134364330 - 3utr > 2 6 111 41 0.350 0.000 80 14 0.180 0.010 112 111 37 1056 CATGCTTTCCTCAACTGCAGTCACCCCAGAGGAAAGGGGGAGAGATGGTGAAATGTCTCCTTGGTCTGAAGCTCTCACACCATATAAAATGGTATGCACACCTCCCTCCTCCCACTTCCCACTCCGGGTTGGTTTTGTGTTTGCTTTTCCG CTX 9.10 LQ 0 other NM_002653 945 geneB_no_inframe_contig_found geneB_transcripts=NM_002653;geneb_utr_codons=13 MV4_11_RNAseq_1 SLC27A5 chr19 59003891 + intergenic C5orf34 chr5 43495655 - intron > 4 0 142 91 0.020 0.950 182 1 0.270 0.000 143 134 124 63 ATCGCTACAGCATCTGCCTGTATTTCTCACATGCTTACATGAAAGGCATTATTTATTCACTTGGACAACAAAGGCTGCTTTTCGTGAGAGTCACTGGTCCTCCCATGAGGGCATCCACCGATACTTCAAGAATTCTTCCTGGGGCCAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACC CTX 9.10 LQ 0 other 0 NM_012254 NM_198566 geneB_CDS_mapping_exception=NM_198566:-2;geneB_no_inframe_contig_found geneB_transcripts=NM_198566 MV4_11_RNAseq_1 LINC00158 chr21 26734769 + intergenic NFIC chr19 3465146 + 3utr > 0 4 129 136 0.940 0.000 0 149 0.000 0.060 148 146 23 75 CGACGCTCTTCCGATCTGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGAGAAGAACGTGGAGAAGAAAATTGACAAATACACAGAGGTCCTCAAGACCCACGGACTCCTGGTCTGAGCCCAATAAAGACTGTTAATTCCTTTAAAAAAAAAAAAAAAAAAAAAAAGATACAAGAAAAACCTTTAAAAAAATTCCATGTTTCCTAATTTGCACGAAATTTTCTACCACAAGATGTGCCTTGCCTTCCGAGAATAAGTATTACCTTTAAACAATAT CTX 8.94 LQ 0 other ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_001245002,NM_001245004,NM_001245005,NM_005597,NM_205843 ,,,, ,,,, ,,,, ,,,, 1527,1320,1293,1287,1500 ,,,, ,,,, ,,,, ;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001245002,NM_001245004,NM_001245005,NM_005597,NM_205843;geneb_utr_codons=13 ,,,, ,,,, MV4_11_RNAseq_1 NA chr3 175694693 - intergenic EIF4G3 chr1 21153001 - intron > 0 3 97 161 0.960 0.000 1 176 0.010 0.100 104 89 0 122 GGCTTTTGGTCTCCCTGGGAGTGGGTGGAGGCAGCCAGGGCTTACCTGTACACTGACTTGAGACCAGTTGAATAAAAGTGCACACCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGACTCACATTCTGGCTGGCACAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACTTGAGGTCAGGAGTTGGAGACCAGTCTGGCCAACATGGCAAAATCCCATCTCTAC CTX 8.04 LQ 0 other ,, ,, ,, ,, ,, ,, ,, ,, NM_001198801,NM_001198802,NM_003760 ,, ,, ,, 4209,4119,4101 4866,4776,4758 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001198801,NM_001198802,NM_003760 ,, ,, MV4_11_RNAseq_1 BZRAP1 chr17 56409559 - intron EIF4A3 chr17 78120924 - 5utr > 0 6 69 123 0.000 0.100 1 160 0.000 0.110 69 93 140 437 CTGGAGAGTAAGGCGGGGATGGCAGAGGGTACGCAGAGGCTGAGAAGTGGGACCAGTGTCTCAAGGGGCACAGCGAGGTCGGCAGCGGCAGCGAGGTCGGCAGCGGCACAGCGAGGTCGGCAGCGGCACAGCGAGGTCGGCAGCGGCACAGCGAGGTCGGCAGCGGCGGCGAGGTCGGCAGCGGCACAGCGAGGTCGGGAGCGGCAGCGAGGTCGG INS 7.97 LQ 2 other 3,0,0 ,, ,, ,, ,, ,, ,, ,, NM_014740,NM_014740,NM_014740 -54,-54,-54 ,, tuple,tuple,tuple ,, 1236,1236,1236 ,, ,, ,, ;; geneA_no_transcript_IDs_found;ERROR_geneB_multiple_matching_frames=NM_014740 geneB_transcripts=NM_014740;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 DNAJC12 chr10 69547531 + intergenic CHTF8 chr16 69152515 - 3utr > 0 4 74 126 0.940 0.550 1 206 0.010 0.010 78 79 0 422 CTTGAATCCGGGAGGCAGAGGTTGCAGTAAGGCAAGATCCTGCCATTGCACTCCAGCCTGGGTGACAGAGCAAGACTCAGAAGCCTGCTGTGCTTTCGTCCCACAGCTTTCTGCCCATTGTTTCTTACTAGTTTCTTGAATTGTTCTTGTGGACTTTTCCTCAGGGATACATTGGCCTGCAGGTCCCAGTTCACATGTAGTCCCC CTX 7.95 LQ 0 other 0,0,0 NM_021800,NM_021800,NM_021800 ,, ,, ,, ,, ,, ,, NM_001039690,NM_001040146,NM_138612 ,, ,, ,, ,, 366,366, ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001039690,NM_001040146,NM_138612;geneb_utr_codons=13;geneB_transcript_strand_disagree=NM_138612 ,, ,, MV4_11_RNAseq_1 DSG2 chr18 29113976 - intron CHTF8 chr16 69152515 - 3utr > 0 4 74 126 0.940 0.550 1 206 0.020 0.010 80 79 0 422 CTTGAATCCGGGAGGCAGAGGTTGCAGTAAGGCAAGATCCTGCCATTGCACTCCAGCCTGGGTGACAGAGCAAGACTCAGAAGCCTGCTGTGCTTTCGTCCCACAGCTTTCTGCCCATTGTTTCTTACTAGTTTCTTGAATTGTTCTTGTGGACTTTTCCTCAGGGATACATTGGCCTGCAGGTCCCAGTTCACATGTAGTCCCC CTX 7.95 LQ 0 other ,, NM_001943,NM_001943,NM_001943 ,, ,, ,, ,, ,, ,, NM_001039690,NM_001040146,NM_138612 ,, ,, ,, ,, 366,366, ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001039690,NM_001040146,NM_138612;geneb_utr_codons=13;geneB_transcript_strand_disagree=NM_138612 ,, ,, MV4_11_RNAseq_1 IL6R chr1 154350142 - intron CRK chr17 1325475 - 3utr > 0 5 85 376 0.910 0.020 1 88 0.000 0.150 89 75 1 105 CTTAAGCTGTTCTTGCATAGGCTCTTAAGCAGCATGGAAAAATGGTTGATGGAAATTAAACATCAGTTCAGTCTCAAAAAAAAAAAAAGGAAAAAAAAAAGAAAAAAAAATGTTGAACCAATTGTGAATTACTTATGTATTATTCATTTCTCATGGGGAGAGTAATGCTGTTGAAGAACATTACATTGTAAACTGCCTTCATTTTTGGCTCTTTGTTTATGTTCAGGTTTAGTTTACAAACCCATTTAAGTATGGAATGATTTATATGGGGTCAGGTGCTCCACAAAATAGACCTATGAGACCAAAAATGACCTAGGCTATTTAGACGACAGCATGAAACTTCCACGTTAGTTCTCAGTCTATAAAGGCACTTACCGGTCTCTGGTGTGGTATGACCAATAGAAACACCTTATAGTTTGCTTTGGACCTCATTTTGGAAAAATAATCTGCC CTX 7.92 LQ 1 other , , , , , , , , NM_005206,NM_016823 , , , , 615,915 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_005206,NM_016823;geneb_utr_codons=13 , , MV4_11_RNAseq_1 FBXO34 chr14 55707157 - intron TAX1BP1 chr7 27868484 + 3utr > 0 5 72 223 0.670 0.000 1 105 0.000 0.050 74 73 0 719 GTTTTCCTTTATTGAGTACCAAGCCATGTAATGGTAACTTGGACTTTAATAAAAGGGAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACACCTAAAATAGACCACTGAGGAGACCATAGAGCGGATGCTTTCATGCACCCTTTACTGCACTTTCTGACCAGGAGCTACTTTGAGTTTGGTGTTACTAGGATCAGGGTCAGTCTTTGGCTTATCAATAAATTTTAATCTCTGTTAATCTTACCTGCTTTAAAAAAAAGTTCTTGTGTGTTCGTATCTTTATTTATTCCCTAG CTX 7.73 LQ 2 other ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, NM_001079864,NM_001206901,NM_001206902,NM_006024 ,,, ,,, ,,, ,,, 2244,2244,1773,2370 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001079864,NM_001206901,NM_001206902,NM_006024;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 HSPA8 chr11 122928280 + 3utr GPBP1L1 chr1 46093374 - 3utr ? 0 3 75 169 0.910 0.000 0 166 0.000 0.010 75 83 10963 472 GCCAATTTTAAATAGTTTTATTTAAGACATTGCATTTTCCACTTACAATACAGTGTTTATAAAGTGCAATGTTATGGTGGAGGTGTAAAATATTTGGATATAGGAAATGTTGTGTTATTCTTGCAGCCTTGATATTCAGGGTGGATTGTAAAATATAAATTTTTGTGAGATTTCAAAGATTAAGATTATTTTGATAACATTATTTACAGATTTAAAAGATGTGGTTATCACAAGTCTCGAGGGGGAAACTAC CTX 7.47 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 NA chrX 99410805 - intergenic CRK chr17 1325475 - 3utr > 0 5 77 376 0.930 0.020 1 88 0.010 0.150 84 75 0 105 CTTAAGCTGTTCTTGCATAGGCTCTTAAGCAGCATGGAAAAATGGTTGATGGAAATTAAACATCAGTTCAGTCTCAAAAAAAAAAAAAGGAAAAAAAAAAGAAAAAAAAATGTTGAACCAATTGTGAATTACTTATGTATTATTCATTTCTCATGGGGAGAGTAATGCTGTTGAAGAACATTACATTGTAAACTGCCTTCATTTTTGGCTCTTTGTTTATGTTCAGGTTTAGTTTACAAACCCATTTAAGTATGGAATGATTTATATGGGGTCAGGTGCTCCACAAAATAGACCTATGAGACCAAAAATGACCTAGGCTATTTAGACGACAGCATGAAACTTCCACGTTAGTTCTCAGTCTATAAAGGCACTTACCGGTCTCTGGTGTGGTATGACCAATAGAAACACCTTATAGTTTGCTTTGGACCTCATTTTGGAAAAATAATCTGCC CTX 7.14 LQ 0 other , , , , , , , , NM_005206,NM_016823 , , , , 615,915 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_005206,NM_016823;geneb_utr_codons=13 , , MV4_11_RNAseq_1 ERCC2 chr19 45860890 - coding PSMB4 chr1 151374338 - 3utr > 0 5 69 277 0.000 0.010 1 138 0.000 0.140 75 82 185 1591 GCCAAAGGCTTCACCATCATCATCGAGCCCTTTGACGACAGAACCCCGACCATTGCCAACCCCATCCTGCTCTTCCGATCGGGCAACTTCAGTTCTGGATAATGCATCTGTATTTCATTCAAAGCCACTGATCATGTGGGCAATATCCCAGTTGGTCTCTGTAGACAATGGTCCCTCTATTTCAACACCTTTTTCGGTGACAGTGGCGATTTGAAACCGGTTGTAAGAACGGGCATCTCGGTAGTACAGCACTCGCATGCAGCGTTCTACTAAGTCGCGGGCCTCGGTCTGGCTTAGCACTGGCTGCTTCTCCAGAACTTCTCGCAGCAGAGGCTGAGCCAAGTATGCACCATAACCAG CTX 6.87 LQ 0 CLoss NM_000400 1305 NM_002796 geneB_no_inframe_contig_found geneB_transcripts=NM_002796;geneB_transcript_strand_disagree=NM_002796;geneb_utr_codons=13 MV4_11_RNAseq_1 NA chr1 164890804 - intergenic NT5M chr17 17286886 + intergenic > 0 7 74 235 0.900 0.670 1 107 0.010 0.010 80 91 0 814 GACTTCTAAAAGGAACTATGTCTGGAAGGCTGTGGTCCAAGGCCATTTTTGCTGGCTATAAGCGGGGTCTAAGGAACCAACCGGGGTGGCCAGTTTCAGTTCTTCAGCAGAACTGTCTCCCTTCTTGGGGGCCGAGGGCTTCCTGGGGAAGAGGATGAGTTTGGAGCGGTACTCCTTCAGCCGCTGCACGTTGGCCTGCAGGGACTCCGTGGACTTGTTCCGCCTCCTCGGATCCACAGAAATGCCGATGGTCCGGGCCACCTTCTTGTGAATGCCGTCCACCCTGAGCTCCTCCAGGCTGAAGCCGCGGCCGGCGCGCACCTTCG CTX 6.82 LQ 0 other 0 NM_020201 geneB_no_transcripts MV4_11_RNAseq_1 NKX2-2 chr20 21468216 - intergenic LGR6 chr1 202222926 + intron > 0 3 71 114 0.670 0.990 1 152 0.000 1.000 76 78 9 6 GAAATATGGAATTATTTCTGACACATGAAGCCCACTAAACTATGCTTTCTTATAATGCATATTTCTTCTCAGTTTATTTTTTATTTTATTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTC CTX 6.79 LQ 0 other 0,0,0 NM_002509,NM_002509,NM_002509 ,, ,, ,, ,, ,, ,, NM_001017403,NM_001017404,NM_021636 ,, ,, ,, 428,299,272 2904,2487,2748 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001017403,NM_001017404,NM_021636 ,, ,, MV4_11_RNAseq_1 XRCC5 chr2 217071004 + 3utr SEC62 chr3 169700644 + coding > 3 0 83 69 0.000 0.000 136 0 0.220 0.000 84 83 18 821 CAGTCACCTCTTCTTCAGCACCCTCATAAGTCGTCACTAATACACAGTTTTGTACATGTAACATTAAAGGCATAAATGACTCAGACAAAAAAAGAAAAAGAGAAAAAAAAAGATGGTGAAAAGGAAGAATCCAAAAAGGAGGAAACTCCAG CTX 6.77 LQ 0 NLoss 0,3 NM_021141, , 21, , , , , NM_003262,NM_003262 134,134 4, blat,blat 401,401 1200,1200 27, , QSPLLQHPHKSSLIHSFVHVTLKA*MTQTKKEKEKKKDGEKEESKKEETP, XRCC5:NM_021141[1,21]-SEC62:NM_003262[4,8]; geneB_transcripts=NM_003262 , 0, MV4_11_RNAseq_1 SAMM50 chr22 44352969 + intron NT5M chr17 17286886 + intergenic > 0 7 74 235 0.900 0.670 1 107 0.000 0.010 80 91 491 814 GACTTCTAAAAGGAACTATGTCTGGAAGGCTGTGGTCCAAGGCCATTTTTGCTGGCTATAAGCGGGGTCTAAGGAACCAACCGGGGTGGCCAGTTTCAGTTCTTCAGCAGAACTGTCTCCCTTCTTGGGGGCCGAGGGCTTCCTGGGGAAGAGGATGAGTTTGGAGCGGTACTCCTTCAGCCGCTGCACGTTGGCCTGCAGGGACTCCGTGGACTTGTTCCGCCTCCTCGGATCCACAGAAATGCCGATGGTCCGGGCCACCTTCTTGTGAATGCCGTCCACCCTGAGCTCCTCCAGGCTGAAGCCGCGGCCGGCGCGCACCTTCG CTX 6.49 LQ 0 other 0 NM_015380 21 NM_020201 geneB_no_transcripts MV4_11_RNAseq_1 UBE2S chr19 55919127 + 5utr PHLDB3 chr19 43979690 - coding > 8 0 136 69 0.510 0.000 127 1 0.060 0.000 156 156 971 51 TTTCCCTACACGACGCTCTCCCCTTCCTGCGTTCTTCGGTCCGCCGGCCGGGGCGGGGGGCCCAACTGCTGCCGCTGCGGCCCTGGAGAGGCCCCGGCGGCCCCGCTCCGCTCCCCGCTGCCTCCGACGTCCGCCGCGCACAGCGTAGACCAACCCGCCGCCCACCTTCTGCGTCAAAACCTACGAACGCCTTTTCTACATGGTGGCTCCGAGCCCCGAA ITX 6.32 LQ 0 NLoss NM_014501 NM_198850 1795 1923 geneB_blat_issues=too_many_mismatches;geneB_anchor_fail_but_found_blat_hit=NM_198850 geneB_transcripts=NM_198850 MV4_11_RNAseq_1 LYZ chr12 69747291 + 3utr GOSR1 chr17 28818656 + intron > 5 3 57 95 0.000 0.850 42 112 0.060 0.050 57 56 21334 139 CTAAAACCTTGGTTATCAAATACATCTCCAGTACATTCCGTTCTTTTTTTTTTTGAGACAGAGCAAGACTCTGTCTAAAAAAAAAAAGAAAGGAAAAGACCAATGTGGTCCTGTAGGAGTTTAGAATCTAGGTGCTAGAGGAAAGTATATG CTX 6.31 LQ 1 other ,, NM_000239,NM_000239,NM_000239 ,, ,, ,, ,, ,, ,, NM_001007024,NM_001007025,NM_004871 ,, ,, ,, 246,435,441 558,747,753 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001007024,NM_001007025,NM_004871 ,, ,, MV4_11_RNAseq_1 RMI1 chr9 86618971 + 3utr C12orf75 chr12 105773517 + intergenic > 13 0 405 182 0.000 0.990 504 1 1.000 0.010 406 401 73 0 TTTTTATTTTGCTGATTATAATATTTGGTATATTTAAGGTAATCTAGTTAACTAGATGCTATTTCATAGATTATATTGAATGATTTAAAACTTTATTTTCAAGGATAGTTTATTTTAAATGGCATATTGAAAACATCATTATTAAGATCCAGTAGGTAGGACATTTATTGGATTAAAATGAAGCATTTATCTATGTCTTTAGGTGTCATTGTTCCCTTTCTGAATTAGCTGTACATATAAGCCTTCCTTTGGTTTTAAGTACTGATTTTTTTTTAAAAAAAAGAGGGACTGTTTACCATTCTTCCACTGTGCTGTTATAAAGTTGTATTTGAAAGGTAATGTTGTTTTTATTAATCTTTTGTCTTAAAATAATTTAAAGTGCTTTGAATTTTAAAACATTAAACAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCCTCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAG CTX 6.04 LQ 0 other 0 NM_024945 NM_001145199 geneB_no_transcripts MV4_11_RNAseq_1 C12orf79,BTG1 chr12 92537720 + 3utr EIF5A chr17 7215429 + 3utr ? 1 2 143 43 0.000 0.660 33 12 0.120 0.040 144 134 223 4821 CTGGGAGAAACTGAAACCACCCTAGGACTTCCCTCCCTAGCAAATAAAGTGATCATTTACTTGGACTCACAGGCTATTAAAATTAATCATTGAAAGGTACTGTCCAAACTATGGCACTGTCACTTAAAATTTTTTTTTTTTTTTTTTTTTTTAAATTCAATCTGGAATCAGAAAGCG CTX 6.00 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 NPTN chr15 73853191 + 3utr MRS2 chr6 24425344 + 3utr ? 3 0 161 70 0.440 0.000 138 1 0.030 0.000 162 163 356 170 ATCACTAGATGGCAGCAGTGCATTTTAGAGCTTTGCCAATTTAACAGCTGCATTAAGTAAAAAATGGCGCATGCATGATCTGATCCTCAGAGGACCTTTTCACTTCTATTTAAATATTTTAACAAAGGAAAAAAAAAAGCAACATTCACAGCACATCAAGCATTACGAATCTCTTAGGATTTTTAAGATTGTATTTGATAATACTTATATTTCACAGGGCACACTTTTGGC CTX 5.66 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 SPEN chr1 16154865 + intron STAG3L1,STAG3L3 chr7 72474255 - 3utr > 0 4 71 143 0.650 0.760 1 118 0.000 0.020 74 85 22 348 GTGTCGCACTGCAAACGCGGCAATGGTCTCATCAAGGTGAACGGGCGGCCCCTGGAGATGATGGAGCCGCATGCCGATGTACCAGACAAGAAGACAAGAAAATGATTTGAGGACAGCTTCAATCGCGGTGTGAAGAAGAAAGCAGCAAAACGACCACTGAAAACAACGCCGGTGGCAAAATATCCAAAGAAAGGGTCCCAAGCGGTACATCATCATAGCCGGAAACAG CTX 5.59 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr10 122114355 + intergenic UBA52 chr19 18682671 + 5utr > 0 5 167 148 0.960 0.490 0 134 0.000 0.310 167 160 5471 428 CTTTATTTTTTTTTTTAACACCTATTATGCCATGAATTCATAGGGAATAGGTTCCAGCAGCTCAGGCTCCTTCCCATTGGTTCTCACAAAGTGTGCTTCTCTGGGTGGAGCAGGCTGGCGCTTTAGTTGAACCCAGGTACCTTTCTCTTTGGCTTCTTTCTTTTTCTTCAGCGAGGCGGCCGAGCTGACGCAAACATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACC CTX 5.36 LQ 0 other 3,3 , , , , , , , NM_001033930,NM_003333 -18,-11 , blat,tuple , 387,387 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_001033930,NM_003333;geneb_utr_codons=13;geneb_utr_codons=12 , , MV4_11_RNAseq_1 TIAL1 chr10 121336963 - coding PTDSS1 chr8 97346651 + 3utr > 3 0 99 69 0.230 0.000 107 1 0.010 0.000 144 167 889 1166 ATTGTTGACTGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGTCTGGGTTAACAGATCAGCTTATGAGACAGACATTCTCACCATTTGGACAAATTATGGAAATAAGAGTTTTCCCAGAAAAGGGCTATTCATTTGTCAGATTTTCAACCCATGAAAGTGCAGGTCCCATGTGAGGTGCTGGTGAGTATTACCTTTCATCTGTGCCATGCTCTAGAACCTTGACCTTGATAG CTX 5.33 LQ 0 CLoss ,,, NM_001033925,NM_001033925,NM_003252,NM_003252 ,,, ,,, ,,, 788,788,737,737 ,,, ,,, NM_001290225,NM_014754,NM_001290225,NM_014754 ,,, ,,, ,,, ,,, 984,1422,984,1422 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001290225,NM_014754;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 RMI1 chr9 86618971 + 3utr NBPF20,NBPF9,NBPF8,NBPF25P,NBPF10,NBPF12 chr1 145186062 - intron > 13 2 405 178 0.000 0.990 504 115 1.000 0.000 405 406 73 43 TTTTTATTTTGCTGATTATAATATTTGGTATATTTAAGGTAATCTAGTTAACTAGATGCTATTTCATAGATTATATTGAATGATTTAAAACTTTATTTTCAAGGATAGTTTATTTTAAATGGCATATTGAAAACATCATTATTAAGATCCAGTAGGTAGGACATTTATTGGATTAAAATGAAGCATTTATCTATGTCTTTAGGTGTCATTGTTCCCTTTCTGAATTAGCTGTACATATAAGCCTTCCTTTGGTTTTAAGTACTGATTTTTTTTTAAAAAAAAGAGGGACTGTTTACCATTCTTCCACTGTGCTGTTATAAAGTTGTATTTGAAAGGTAATGTTGTTTTTATTAATCTTTTGTCTTAAAATAATTTAAAGTGCTTTGAATTTTAAAACATTAAACAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCCTCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAG CTX 5.04 LQ 0 other , NM_024945,NM_024945 , , , , , , NM_001277444,NM_001278267 , , , , , , , , ; geneB_CDS_mapping_exception=NM_001277444:-2;geneB_CDS_mapping_exception=NM_001277444:-5;geneB_breakpoint_not_mapped_to_CDS=NM_001277444;geneB_CDS_mapping_exception=NM_001278267:-4;geneB_breakpoint_not_mapped_to_CDS=NM_001278267 geneB_transcripts=NM_001277444,NM_001278267 , , MV4_11_RNAseq_1 LOC643339 chr12 93477185 - intron POLR3E chr16 22321510 - intron ? 0 4 157 144 0.920 0.000 0 123 0.010 0.040 158 158 10474 149 GATCTAGAAACATGGAATGCCAGACGCTGGGGATGCTGGTACAAGTTGTGGGACTGCATGCTACTGTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCCGATCACCTCTGAGACCCACCTTGCTCATAAACAAAATGCCCATCTCCATTATAATGTTATGGGACCACCGTTGAGTATGTGGTCGGTCGCTGACTGAGACGTAATCACACAGCGCGTAGCTGCGAGTGAAGAAGCATGTGGCTTCTTTCACTTAGCACAATGTTCTCAAGGCTCATCTGCGTGGTAG CTX 4.92 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 EIF4G3 chr1 21153001 + intron MIR1281 chr22 41469568 + intron ? 3 0 161 100 0.000 0.950 176 1 0.100 0.010 162 149 122 0 GTAGAGATGGGATTTTGCCATGTTGGCCAGACTGGTCTCCAACTCCTGACCTCAAGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCAGCCAGAATGTGAGTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGTGTGCACTTTTATTCAACTGGTCTCAAGTCAGTGTACAGGTAAGCCCTGGCTGCCTCCACCCACTCCCAGGGAGACCAAAAGCC CTX 4.90 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 SPEN chr1 16154865 + intron STAG3L1 chr7 74990642 + 5utr > 0 3 71 143 0.650 0.750 1 102 0.000 0.080 74 85 22 119 GTGTCGCACTGCAAACGCGGCAATGGTCTCATCAAGGTGAACGGGCGGCCCCTGGAGATGATGGAGCCGCATGCCGATGTACCAGACAAGAAGACAAGAAAATGATTTGAGGACAGCTGCAATCGCGGTGTGAAGAAGAAAGCAGCAAAACGACCACTGAAAACAACGCCGGTGGCAAAATATCCAAAGAAAGGGTCCCAAGCGGTACATCGTCATAGCCGAAAACAG CTX 4.83 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 GOLGA6L10 chr15 83041445 + intron C6orf120 chr6 170103149 + 3utr > 0 4 73 139 0.920 0.000 0 163 0.000 0.080 73 74 28732 153 GCCCAGTGTAACACCCTTGATCATGTTCTGTACATGACTACAAATAGTCCGAACGGTAGCCAGTTCCTTTCTGAGGGATATAAAACCCTCCATCTGTGAAGCTGATTGCAGTTTGCTGTGAACCTTGCTACTTGTACTTGGTTGAAGTTCTAGGTACCTTTAGTCAAGGGATGGAAAAATAAAGCCATACGCAGTTTTGTTACCTCAGTTACCN CTX 4.80 LQ 0 other NM_001291420 NM_001029863 576 geneB_no_inframe_contig_found geneB_transcripts=NM_001029863;geneb_utr_codons=13 MV4_11_RNAseq_1 PITPNC1 chr17 65410227 + intron TAX1BP1 chr7 27868484 + 3utr > 0 5 71 223 0.670 0.000 1 105 0.000 0.050 76 73 95 719 GTTTTCCTTTATTGAGTACCAAGCCATGTAATGGTAACTTGGACTTTAATAAAAGGGAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACACCTAAAATAGACCACTGAGGAGACCATAGAGCGGATGCTTTCATGCACCCTTTACTGCACTTTCTGACCAGGAGCTACTTTGAGTTTGGTGTTACTAGGATCAGGGTCAGTCTTTGGCTTATCAATAAATTTTAATCTCTGTTAATCTTACCTGCTTTAAAAAAAAGTTCTTGTGTGTTCGTATCTTTATTTATTCCCTAG CTX 4.69 LQ 2 other ,,,,,,, NM_012417,NM_012417,NM_012417,NM_012417,NM_181671,NM_181671,NM_181671,NM_181671 ,,,,,,, ,,,,,,, ,,,,,,, 48,48,48,48,48,48,48,48 ,,,,,,, ,,,,,,, NM_001079864,NM_001206901,NM_001206902,NM_006024,NM_001079864,NM_001206901,NM_001206902,NM_006024 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, 2244,2244,1773,2370,2244,2244,1773,2370 ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001079864,NM_001206901,NM_001206902,NM_006024;geneb_utr_codons=13 ,,,,,,, ,,,,,,, MV4_11_RNAseq_1 PDZRN4 chr12 41757506 + intron CEP97 chr3 101485784 + 3utr > 0 4 69 137 0.510 0.000 1 149 0.010 0.210 72 64 0 43 TCTGCTAGTGTGGAGATAAATCATATTATGGCCAAGGGTCATGATGGCAGGAGTAATCAGAGGTGTTCTTGTTTTTTAAAGAGATGGAGGCTGGCTCTGTTGGTGCGGTGCCATGATCATAGTTCACTATAACCTCGAACTCCTGGCTCAAGTGATCTCCCACTTCAGCCTCCCGAGTATCTGGGATTATAAGCAAGAGCC CTX 4.63 LQ 0 other NM_001164595 844 NM_024548 2598 geneB_no_inframe_contig_found geneB_transcripts=NM_024548;geneb_utr_codons=13 MV4_11_RNAseq_1 KLF1 chr19 13005739 + intron SLC35E1 chr19 16663169 - 3utr > 0 3 72 314 0.800 0.040 1 100 0.000 0.090 85 75 340 137 CTACTTCTAAGTCTGAATCCAGTCAGAAATAAGATTTTTTGAGTAACAAATAAATAAGATCAGACTCCATCTCAAAAAAAAAAAACAAAACAAAACCAAGTTCCCACTGGTGATGCCTGTCTGACACGTTTTGGTATTTAGTAGGAAATGAAGTGTTTCGAAGCTTCGAGAGAAGCTTCAAAATTGTCACAATTGCTGAAAACAGAATGAATCGTGAACATTATCTCAATATTTTGTATAATAGACAAGACCACAGTGTTTTGGTTCCCTGACCTGTTTTTGTGTTTATGTTAGGATCTGAATCATGTTCTGGGTAAGGGGACGAGGAGCGAACACTGCACTAAGATTTGGTTTGCCAAATCAGATTCTTTGGTCAAGAGTCAGTTTGGA ITX 4.46 LQ 0 other , NM_000159,NM_013976 , , , 506,506 , , NM_024881,NM_024881 , , , , 1233,1233 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_024881;geneb_utr_codons=13 , , MV4_11_RNAseq_1 DVL3 chr3 183867789 - intron FAM73A chr1 78341966 + 3utr > 0 3 71 153 0.740 0.000 1 126 0.000 0.560 72 64 61 11 CAGCACACCATAGCAGGCCCTCCGCACAGCAAGCCCTCCTAGGAGTTTGTAACGCAGAGACTCTGCCTGGGCGACAGCAAGACCCTATCTCAGAAGTGAATAAATAAAACAAATACAGCATTTAAATGAATTGACATTGAGAAATTTACAATTTACAAATTTATATTAACTGTAGTTTCCAAAATATGTTACTGTTGGTCCTGTAAGTTACAAAGAG CTX 4.43 LQ 0 other , , , , , , , , NM_001270384,NM_198549 , , , , 1902,1899 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001270384,NM_198549;geneb_utr_codons=13 , , MV4_11_RNAseq_1 TBCK chr4 107074997 + intron FOXJ3 chr1 42650369 - intron ? 3 0 190 71 0.000 0.490 122 1 0.310 0.000 191 182 51 140 CTGAAACAAGAGTGTTGAAGTCTCCAGGTTTTATTGTATGGGTTCCATCTCTCTCTTTAGTGCTAATAAGTTGGGTACTCCAGTACTGAATTCATATATGTTTACACTGCTTATATATCCTCTTGCTGAACTGACCCATTTACCATTATATAATGACTTTCTTCGTCTCTTCTTAGAGTTTTTTTTTTCCATAGCATGTTACATACTATTTAATTTACTTTGTTTGCCCCTACCCAACATGCCCAAGAATAC CTX 4.21 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 FLVCR2 chr14 76062582 + intron NA chr13 55014983 - intergenic > 0 28 68 132 0.530 0.920 1 296 0.000 0.070 74 66 11 509 TGAACTTTCTAGTGCGGATAGTTACGGTGTCGTTCATGATGGCGATCTATCTTCAGACAGCCAAGGAGGAAAAGAGGAAAGAGAAAGCCAAGATCCACTACCGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGAGAAGAACGTGGAGAAGAAAATTGACAAATACACAGAGGTCCTCAAGACCCACGGACA CTX 4.20 LQ 0 other NM_017791 669 geneB_no_transcripts MV4_11_RNAseq_1 NA chr21 10492893 - intergenic JMJD1C chr10 65006985 - intron > 0 3 71 139 0.830 0.000 1 137 0.010 0.090 71 63 0 30 GTGATTTTCATATTGAATTGCAAATTCGAAGAAGCAGCTTCAAACCTGCCGGGGCTTCTCCCGCCTTTTTTTCCTCAGTCTAGCTAAATATTTATTGATTTTATCTATCTTTTCAAAATCCAGCTTTTCATTTTTTTAAAATTTTCTTCTGTTTTTTGTTTTTTTGTTTTTGTTTTTTTTTTTTTGTCTCAGTTTATTTCCG CTX 4.15 LQ 2 other , , , , , , , , NM_001282948,NM_032776 , , , ,447 7077,7623 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001282948,NM_032776;geneb_utr_codons=13 , , MV4_11_RNAseq_1 KCTD14,NDUFC2-KCTD14,NDUFC2 chr11 77784151 + coding C9orf114 chr9 131591128 - coding ? 3 1 56 159 0.000 0.330 12 55 0.010 0.040 56 55 3715 272 GTCCCTCACAGCATACAGGTAGTCTTCACGTTTTACAAGATAATATCCAGCAAAAAAAAAAAATGGAAGGATCTCAAGCTGATGAAAAAACTGGAGCGGCAGCGGGCACAGGAGGAACAGGCAAAGCGCCTGGAAGAGGAGGAGGCAGCGGCAGAGAAGGAGGACCGCGGGCGGCCCTACACACTGAGCGTAGCCCTGCCGGGCTCCATCCTGG CTX 4.02 LQ 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 EIF4G3 chr1 21153001 + intron LOC102724224 chr2 177490930 + intron ? 3 0 161 97 0.000 0.960 176 1 0.100 0.030 162 148 122 0 GTAGAGATGGGATTTTGCCATGTTGGCCAGACTGGTCTCCAACTCCTGACCTCAAGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCAGCCAGAATGTGAGTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGTGTGCACTTTTATTCAACTGGTCTCAAGTCAGTGTACAGGTAAGCCCTGGCTGCCTCCACCCACTCCCAGGGAGACCAAAAGCC CTX 4.02 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 BASP1 chr5 17267929 - intron SATB1 chr3 18390239 - 3utr > 0 6 68 263 0.000 0.000 1 132 0.000 0.030 70 58 48 1114 CAATGTGAAGCTTGCTGAAAATTAGAAATAAAAAAAATTTTAAAAAGAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAGAGTTTGTTACTCTATTGTATGTTACAAAAGAACTATAGACTGTGGAATGCAGTTTAAAGATGACATATGCCAACAAATGCCTTGTATTATATGGCACTGCCGTAATTCAAATTTGTTTTTATTTTGGAAATAAAAGTTCACTGTACTTTTTTTTCATTCTCATTGTTACATGATTTTTTAAAAAAAGGAAAAGAAAATGTGAAACACAATTTAGTCCTCATTATTTATTTGTAGATCCTGC CTX 3.99 LQ 0 other ,,,,, NM_001271606,NM_001271606,NM_001271606,NM_006317,NM_006317,NM_006317 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001131010,NM_001195470,NM_002971,NM_001131010,NM_001195470,NM_002971 ,,,,, ,,,,, ,,,,, ,,,,, 2292,2388,2292,2292,2388,2292 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001131010,NM_001195470,NM_002971;geneb_utr_codons=13 ,,,,, ,,,,, MV4_11_RNAseq_1 PPP1R12B chr1 202440924 - intron SERBP1 chr1 67875024 - 3utr > 1 4 273 234 0.890 0.050 37 40 0.400 0.080 274 274 10 244 AGGAAACACAAGAAGAAACGCCTGGTGCAGAGCCCCAATTCCTACTTCATGGATGTGAAATGCCCAGGATGCTATAAAATCACCACGGTCTTTAGCCATGCACAAACGGTAGTTTTGTGTGTTGGCTGCTCCACTGTCCTCTGCCAGCCTACAGGAGGAAAAGCAAGGCTTACAGAAGGATGTTCCTTCAGGAGGAAGCAGCACTAAAAGCACTCTGAGTCAAGATGAGTGGGAAACCATCTCAATAAACACATTTTGGATAAAAAAAAAAAAACCCACAGAAAAATGTAGGCAGCCCAGCATAAGATACCGCCTTTCACAGAAATGTTTGCTGACCCCGGAACTGTCACTCTCGGGTTACAAGAGTTTGTTTCTTTGAAACAGTCTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCAGGTCACTGCAGCCTCCACCTCCCGGGTTCAAGCAATTCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGCACCAC DEL 3.96 LQ 0 other ,,,,,,,,,,, NM_002481,NM_002481,NM_002481,NM_002481,NM_032103,NM_032103,NM_032103,NM_032103,NM_032104,NM_032104,NM_032104,NM_032104 ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001018067,NM_001018068,NM_001018069,NM_015640,NM_001018067,NM_001018068,NM_001018069,NM_015640,NM_001018067,NM_001018068,NM_001018069,NM_015640 ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, 1227,1209,1182,1164,1227,1209,1182,1164,1227,1209,1182,1164 ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001018067,NM_001018068,NM_001018069,NM_015640;geneb_utr_codons=13 ,,,,,,,,,,, ,,,,,,,,,,, MV4_11_RNAseq_1 CNPY2,PAN2 chr12 56704742 - coding KDM4C chr9 6835377 + intron > 3 0 299 73 0.000 0.890 97 1 0.010 0.000 300 308 1029 23 GCCTTATGCCCGCTCAGAGGCCCACCTCACAGAGCTGCTGGAGGAGATATGTGACCGGATGAAGGAGTATGGGGAACAGATTGATCCTTCCACCCATCGCAAGAACTACGTACGTGTAGTGGGCCGGAATGGAGAATCCAGTGAACTGGACCTACAAGGCATCCGAATCGACTCAGATATTAGCGGCACCCTCAAGTTTGCGTGTGAGAGCATTGTGGAGGAATACGAGGATGAACTCATTGAATTCTTTTCCCGAGAGGCTGACAATGTTAAAGACAAACTTTGCAGTAAGCGAACAGATCTTTGATGCCGACAGGATGCAGAAGGAGATCACTGCCCTGGCACCCAGCACAATGAAGATCAAGATCATTGCTCCTCCTGAGCG CTX 3.93 LQ 0 CLoss ,,, NM_014255,NM_014255,NM_014255,NM_014255 ,,, ,,, ,,, 505,505,505,505 ,,, ,,, NM_001146694,NM_001146695,NM_001146696,NM_015061 ,,, ,,, ,,, 436,436,502,436 3144,2442,2508,3171 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001146694,NM_001146695,NM_001146696,NM_015061 ,,, ,,, MV4_11_RNAseq_1 NA chr5 99387621 - intergenic MON1B,SYCE1L chr16 77234644 + intron > 0 3 69 142 0.680 0.000 1 174 0.010 0.250 76 83 0 53 AGAAATCGCTGTCGCCTTGATCCAAGCCTACGTTTTCACACTTCTAGTAAGCCTCTACCTGCACGACAACACATAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAACAAAAAGAAAAAAATCTCCCAAGGCAGTCATGCATTTGTATGCCACTAGCATTTTTTTGTTATAGAAATATTCAAAGTGTACCAACGTAGAGAAAATAGCTTTAAACAAAGCCCATGTG CTX 3.77 LQ 0 other NM_001129979 61 729 geneB_no_inframe_contig_found geneB_transcripts=NM_001129979 MV4_11_RNAseq_1 ACSL1 chr4 185681510 - coding NA chr11 38085072 - intergenic > 3 0 91 79 0.000 0.990 207 1 0.030 0.010 92 86 343 0 GGAGAATACATAGCCCCTGAAAAGATTGAAAATATCTACATGCGAAGTGAGCCTGTTGCTCAGGTGTTTGTCCACGGAGAAAGCCTGCAGGGACATGGATGAAGCTGGAAACCATCATTCTCAGCAAACTATCACAAGGACAAAAAAACAAACACTGCATGTTGT CTX 3.07 LQ 1 CLoss ,,,, NM_001286708,NM_001286710,NM_001286711,NM_001286712,NM_001995 ,,,, ,,,, ,,,, 1782,1782,1680,1269,1782 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ;;;; geneB_no_transcripts ,,,, ,,,, MV4_11_RNAseq_1 ACSL1 chr4 185681510 - coding NA chr13 83936837 - intergenic > 3 0 91 79 0.000 0.990 207 1 0.030 0.010 92 86 343 0 GGAGAATACATAGCCCCTGAAAAGATTGAAAATATCTACATGCGAAGTGAGCCTGTTGCTCAGGTGTTTGTCCACGGAGAAAGCCTGCAGGGACATGGATGAAGCTGGAAACCATCATTCTCAGCAAACTATCACAAGGACAAAAAAACAAACACTGCATGTTGT CTX 3.07 LQ 1 CLoss ,,,, NM_001286708,NM_001286710,NM_001286711,NM_001286712,NM_001995 ,,,, ,,,, ,,,, 1782,1782,1680,1269,1782 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ;;;; geneB_no_transcripts ,,,, ,,,, MV4_11_RNAseq_1 CCND2 chr12 4414154 + 3utr CCND2 chr12 4414155 + 3utr > 2 9 147 152 0.000 0.000 82 218 0.060 0.040 147 147 227 237 CTGCTGGCCAACTCTTACATCCCCAGCAAATCATCGGGCCATTGGATTTTTTCCATTATGTTCATCACCCTTATATCATGTACCTCAGATCTCTCTCTCTCTCCTCTCTCTCAGTTATATAGTTTCTTGTCTTGGACTTTTTTTTTCTTTTCTTTTTCTTTTTTTTTTGCTTTAAAACAAGTGTGATGCCATATCAAGTCCATGTTATTCTCTCACAGTGTACTCTATAAGAGGTGTGGGTGTCTGTTTGGTCAGGATGTTAGAAAGTGCTGATAAGTAGCATGATCAGTGTATGCGAG Internal_dup 3.00 LQ 2 ITD NM_001759 NM_001759 870 geneB_no_inframe_contig_found geneB_transcripts=NM_001759;geneb_utr_codons=13 MV4_11_RNAseq_1 URI1 chr19 30447707 + intron C6orf120 chr6 170103149 + 3utr > 0 4 72 139 0.920 0.000 1 163 0.000 0.080 73 74 159 153 NCCCAGTGTAACACCCTTGATCATGTTCTGTACATGACTACAAATAGTCCGAACGGTAGCCAGTTCCTTTCTGAGGGATATAAAACCCTCCATCTGTGAAGCTGATTGCAGTTTGCTGTGAACCTTGCTACTTGTACTTGGTTGAAGTTCTAGGTACCTTTAGTCAAGGGATGGAAAAATAAAGCCATACGCAGTTTTGTTACCTCAGTTACCN CTX 2.91 LQ 0 other , NM_001252641,NM_003796 , , , 64,117 , , NM_001029863,NM_001029863 , , , , 576,576 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001029863;geneb_utr_codons=13 , , MV4_11_RNAseq_1 DENND6B chr22 50798486 - intron ERP29 chr12 112460347 + coding > 4 0 132 68 0.790 0.480 179 0 0.090 0.000 133 138 114 4082 CCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGATGGAGGTTGCAGTGAGCCGACATTGTGCCATTGCATTCCAGCCTCCATGACAGAGCAAGAGTCCATCTCAAAAAAAAAAAAAAAAAAGGGCTGATTGAGAAGAACAAGATGAGTGACGGGAAGAAGGAGGAGCTCCAGAAGAGCTTAAACATCCTG CTX 2.81 LQ 0 NLoss 0,0,0,0,3 NM_001242898,NM_001242899,NM_001242900,NM_014678, ,,,, 1,1,1,1, ,,,, ,,,, ,,,, ,,,, NM_006817,NM_006817,NM_006817,NM_006817,NM_006817 226,226,226,226,226 3,3,3,3, blat,blat,blat,blat,blat 677,677,677,677,677 786,786,786,786,786 46,46,46,46, ,,,, PATWEAEAGESLEPRRWRLQ*ADIVPLHSSLHDRARVHLKKKKKKGLIEKNKMSDGKKEELQKSLNIL,PATWEAEAGESLEPRRWRLQ*ADIVPLHSSLHDRARVHLKKKKKKGLIEKNKMSDGKKEELQKSLNIL,PATWEAEAGESLEPRRWRLQ*ADIVPLHSSLHDRARVHLKKKKKKGLIEKNKMSDGKKEELQKSLNIL,PATWEAEAGESLEPRRWRLQ*ADIVPLHSSLHDRARVHLKKKKKKGLIEKNKMSDGKKEELQKSLNIL, PPP6R2:NM_001242898[1,1]-ERP29:NM_006817[3,3];PPP6R2:NM_001242899[1,1]-ERP29:NM_006817[3,3];PPP6R2:NM_001242900[1,1]-ERP29:NM_006817[3,3];PPP6R2:NM_014678[1,1]-ERP29:NM_006817[3,3]; geneB_no_inframe_contig_found geneB_transcripts=NM_001034025,NM_006817;geneb_utr_codons=13 ,,,, 1,1,1,1, MV4_11_RNAseq_1 NA chr5 76841961 - intergenic TTC17 chr11 43472730 + coding > 0 3 73 239 0.960 0.070 1 108 0.010 0.020 77 86 0 126 GTCTTGACGAGGTGGTCAGTGAACTCCTGATAGGGAGACTTGGTGAATACAGTCTCCTTCCAGAGGTCGGAGAGTCAGTTAACAGAGGTATTACAAAATCTCGGCCAAGACCAATATCCACAACAGTCGCTTGAACAGATTGGCACCCGAATTGCCAAAGTTTTGGAAAAGAACCAGACGTCCTGGGTCCTCTCCAGCATGGCAGCCCTCTACTGGAGGGTGAAAGGCCAAGGAAAGAAGGCAATCGACTGCCTCCGCCAGGCTCTGCACTATGCGCCACACCAGATGAAGGATGTGCCCCTGATTAGCCTGGCCAACATCTTGC CTX 2.52 LQ 0 NLoss 3 NM_018259 983 blat 2947 3426 geneA_no_transcript_IDs_found geneB_transcripts=NM_018259 MV4_11_RNAseq_1 CSTA chr3 122060482 + 3utr LOC101929694 chr3 112415425 + intergenic > 3 0 316 72 0.030 0.660 19 1 0.100 0.010 317 325 2583 0 CCAGGAGATTGTTGATAAGGTTAAACCACAGCTTGAAGAAAAAACAAATGAGACTTACGGAAAATTGGAAGCTGTGCAGTATAAAACTCAAGTTGTTGCTGGAACAAATTACTACATTAAGGTACGAGCAGGTGATAATAAATATATGCACTTGAAAGTATTCAAAAGTCTTCCCGGACAAAATGAGGACTTGGTACTTACTGGATACCAGGTTGACAAAAACAAGGATGACGAGCTGACGGGCTTTTAGCAGCATGTACCCAAAGTGTTCTGATTCCTTCAACTGGCTACTGAGTCATGATCCTTGCTGATAAATATAACCACCAATTATGACTTTGGAGCGTTGGGTGATAGGGCACAAAGGTTCAATTTCAAAGCATTATTTACTACAGTGTTG INS 2.41 LQ 0 other NM_005213 geneB_no_transcripts MV4_11_RNAseq_1 NBPF20,NBPF9,NBPF8,NBPF25P,NBPF10,NBPF12 chr1 145136472 + intron GPATCH1 chr19 33617552 + coding > 7 0 303 68 0.520 0.000 78 1 0.070 0.000 304 316 191 170 GTCAGGATTCTTACATCAATTATCTCAAATGAGACCATGCAAAGCAATTCAGTGTATACAACAATCATTTTTCCCCTTCAGTTCTGCTGCTTTATACAACAGTGTGATTGACAGAAAATTGGATGGCATGTGCCTGGTCAGAAAATGTCATCTGTTTACAAAATAACATCATGCAGCACAGTTTCTACTTTGTCTGCAAGTCAATTCACAAAAACTACTTATTTTCTGTTTTTTATTTGGGAGGCACATGGAACTGAAAAATTTAGCTGCCCAATTTTATTCAACTACCCCACCAAAAAAAAAAAAAAAAATCACAAAGTAGTAGCTCCGAGAGTTCCGACAGCAGCGACAGCCAGAGTGACGAGGAAACCGCAGACGTGTCG CTX 2.36 LQ 0 NLoss , NM_001277444,NM_001278267 , , , , , , NM_018025,NM_018025 , , , 2678,2678 2796,2796 , , , ; geneB_blat_issues=too_many_mismatches;geneB_anchor_fail_but_found_blat_hit=NM_018025 geneB_transcripts=NM_018025 , , MV4_11_RNAseq_1 PLEKHA7 chr11 16996174 - intron YPEL1 chr22 22104394 - intron > 3 0 92 67 0.870 0.000 127 1 1.000 0.000 93 85 18 1 AAGAGAAAGGGCCAAGTTATCCAGTTTTAAGTGTCATTTTTTATTATGAAGACAATAAAATCTTGAGTTTATGTTCACTTCAAAAAAAAAAAAAAGAAAAAGGAAAAAAAAATCTCAGCTTGGTTCCACAAGCCCTGTAGTCCCATCTACT CTX 2.33 LQ 0 other NM_175058 221 geneB_no_transcripts MV4_11_RNAseq_1 ACSL1 chr4 185681510 - coding STXBP5L chr3 121064173 - intron > 3 0 91 79 0.000 0.990 207 1 0.030 0.000 92 86 343 0 GGAGAATACATAGCCCCTGAAAAGATTGAAAATATCTACATGCGAAGTGAGCCTGTTGCTCAGGTGTTTGTCCACGGAGAAAGCCTGCAGGGACATGGATGAAGCTGGAAACCATCATTCTCAGCAAACTATCACAAGGACAAAAAAACAAACACTGCATGTTGT CTX 2.07 LQ 1 CLoss ,,,, NM_001286708,NM_001286710,NM_001286711,NM_001286712,NM_001995 ,,,, ,,,, ,,,, 1782,1782,1680,1269,1782 ,,,, ,,,, NM_014980,NM_014980,NM_014980,NM_014980,NM_014980 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_014980;geneB_transcript_strand_disagree=NM_014980 ,,,, ,,,, MV4_11_RNAseq_1 LINC00910 chr17 41428845 - intergenic IGHV chr16 32254564 + 5utr > 6 0 78 68 0.000 0.870 266 1 0.710 0.010 132 142 17 0 CTCTTTGTTCTATTACCATAATGATCTCTGTTCTATTATGATTACCTTGGGGGAAACCAGGCCACACAGAGTTAGGAGCTGAAGGGCCACAGTGAGAGGTGACCAGAAGACGAGAGTGTGAGCCCTCATTCACGCCCAGAGAAGGGCCGCTGGAGGGCTCCTTGGCCTAGCGGTAATGCCAGTGCCTGGGAAGGCCCTGGTTACTTAGCAGGCC CTX 2.04 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 LINC00910 chr17 41428845 - intergenic IGHV chr16 32697507 - 5utr > 6 0 78 68 0.000 0.870 266 1 0.710 0.010 132 142 17 0 CTCTTTGTTCTATTACCATAATGATCTCTGTTCTATTATGATTACCTTGGGGGAAACCAGGCCACACAGAGTTAGGAGCTGAAGGGCCACAGTGAGAGGTGACCAGAAGACGAGAGTGTGAGCCCTCATTCACGCCCAGAGAAGGGCCGCTGGAGGGCTCCTTGGCCTAGCGGTAATGCCAGTGCCTGGGAAGGCCCTGGTTACTTAGCAGGCC CTX 2.04 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 LINC00910 chr17 41428845 - intergenic IGHV chr16 33195530 + 5utr > 6 0 78 68 0.000 0.870 266 1 0.710 0.010 132 142 17 0 CTCTTTGTTCTATTACCATAATGATCTCTGTTCTATTATGATTACCTTGGGGGAAACCAGGCCACACAGAGTTAGGAGCTGAAGGGCCACAGTGAGAGGTGACCAGAAGACGAGAGTGTGAGCCCTCATTCACGCCCAGAGAAGGGCCGCTGGAGGGCTCCTTGGCCTAGCGGTAATGCCAGTGCCTGGGAAGGCCCTGGTTACTTAGCAGGCC CTX 2.04 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr10 54148811 - intergenic GTF2F1,MIR6885,MIR6790 chr19 6379766 - 3utr > 0 6 68 113 0.830 0.000 1 188 0.010 0.060 72 58 0 215 GTCAATGTGGATGAGAACTAATCGCTGATCGTCAGATCAAATAAAGTTATAAAATTACAAAAAAAAAAAAAAGTAGCCAGGCATGGTGGCGGGAGCCTGTTGTCCCAGCTGTTCCGTAGGCTGAGGCACGAGATTCACTTGAACCTGGGAGGTGGAGGTTGCTGTGAGCTGN CTX 1.97 LQ 0 other NM_002096 1554 geneB_no_inframe_contig_found geneB_transcripts=NM_002096;geneb_utr_codons=13 MV4_11_RNAseq_1 LINC01500 chr14 59261801 + intron GTF2F1,MIR6885,MIR6790 chr19 6379766 - 3utr > 0 6 68 113 0.830 0.000 1 188 0.010 0.060 70 58 0 215 GTCAATGTGGATGAGAACTAATCGCTGATCGTCAGATCAAATAAAGTTATAAAATTACAAAAAAAAAAAAAAGTAGCCAGGCATGGTGGCGGGAGCCTGTTGTCCCAGCTGTTCCGTAGGCTGAGGCACGAGATTCACTTGAACCTGGGAGGTGGAGGTTGCTGTGAGCTGN CTX 1.97 LQ 0 other NM_002096 1554 geneB_no_inframe_contig_found geneB_transcripts=NM_002096;geneb_utr_codons=13 MV4_11_RNAseq_1 LOC101928254 chr7 124940503 - intron GTF2F1,MIR6885,MIR6790 chr19 6379766 - 3utr > 0 6 68 113 0.830 0.000 1 188 0.010 0.060 72 58 0 215 GTCAATGTGGATGAGAACTAATCGCTGATCGTCAGATCAAATAAAGTTATAAAATTACAAAAAAAAAAAAAAGTAGCCAGGCATGGTGGCGGGAGCCTGTTGTCCCAGCTGTTCCGTAGGCTGAGGCACGAGATTCACTTGAACCTGGGAGGTGGAGGTTGCTGTGAGCTGN CTX 1.97 LQ 0 other NM_002096 1554 geneB_no_inframe_contig_found geneB_transcripts=NM_002096;geneb_utr_codons=13 MV4_11_RNAseq_1 FAM19A2 chr12 62415782 + intron FAM73A chr1 78341966 + 3utr > 0 3 68 153 0.750 0.000 1 126 0.010 0.560 72 64 3 11 CAGCACACCATAGCAGGCCCTCCGCACAGCAAGCCCTCCTAGGAGTTTGTAACGCAGAGACTCTGCCTGGGCGACAGCAAGACCCTATCTCAGAAGTGAATAAATAAAACAAATACAGCATTTAAATGAATTGACATTGAGAAATTTACAATTTACAAATTTATATTAACTGTAGTTTCCAAAATATGTTACTGTTGGTCCTGTAAGTTACAAAGAG CTX 1.95 LQ 0 other , NM_178539,NM_178539 , , , , , , NM_001270384,NM_198549 , , , , 1902,1899 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001270384,NM_198549;geneb_utr_codons=13 , , MV4_11_RNAseq_1 NA chr3 174095533 - intergenic PLAGL2 chr20 30781809 - 3utr > 0 3 69 146 0.750 0.530 1 99 0.010 0.190 71 80 0 48 CCCCGTACTCGTGGCCAGCAGTTCCTCTTTGCCTTATATTTGTGGTACGCCCGGCCAGCCTTCAAGATGGCCTTGCCCACACCTCCTGTCTTTTCTCCTTGCCTTCCCCACTCCTGTGTCCTCCCATCTATCCTGTCTTTCCTTTCCTCCTCTCAGTGTCCTCAGCACCCACAAGGAATTTTCCTATCACTGTGAACTTTGCTGGTACAGAGGAATAATATCTGCC CTX 1.70 LQ 0 other NM_002657 1491 geneB_no_inframe_contig_found geneB_transcripts=NM_002657;geneb_utr_codons=13 MV4_11_RNAseq_1 MYADM chr19 54377956 - 3utr FBL chr19 40325450 - coding > 3 0 299 76 0.000 0.840 94 0 0.030 0.000 300 304 171 11418 ATAAGAAAGCCGACAGGCAACCCAGAAAAGAGTTGAGAAAAAAGAAGAGTGGAAAAAGAGAAACAGGCTGGGTGCGGCAGCTCACACCGGTCCTCCCAGCTACTTGGGAGGATGGGGCAGGAGAATCGCTGGAACCCAGGAGGCGGGGGTTGCAGTGAGTCGAGATCGCACCACTGCGCTCCAGCCTGGGCCACAGAGTGAGAATCCGTCTTAAAAAAAAAAAAAAAAAAAAGAAAGAAAAGAAAAAGAGAAACAGCTCAGGGGTGAAAACAGGATGTGGGCAACAAAACAACACAGGAAGGAAACTGCATTGACTCCACAGCCTCAGCCGAGGCCGTGTTTGCCTCCGAAGTGAAAAAGATGCAACAGGAGAACATGAG DEL 1.50 LQ 0 NLoss 0,0,0,0,0,0,0,0,0,0,0,0,0 NM_001020818,NM_001020819,NM_001020820,NM_001020821,NM_001290188,NM_001290189,NM_001290190,NM_001290191,NM_001290192,NM_001290193,NM_001290194,NM_138373, ,,,,,,,,,,,, 2,3,3,3,3,3,3,3,3,3,2,3, ,,,,,,,,,,,, ,,,,,,,,,,,, ,,,,,,,,,,,, ,,,,,,,,,,,, NM_001436,NM_001436,NM_001436,NM_001436,NM_001436,NM_001436,NM_001436,NM_001436,NM_001436,NM_001436,NM_001436,NM_001436,NM_001436 267,267,267,267,267,267,267,267,267,267,267,267,267 8,8,8,8,8,8,8,8,8,8,8,8, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 799,799,799,799,799,799,799,799,799,799,799,799,799 966,966,966,966,966,966,966,966,966,966,966,966,966 101,101,101,101,101,101,101,101,101,101,101,101, ,,,,,,,,,,,, IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM, MYADM:NM_001020818[1,2]-FBL:NM_001436[8,9];MYADM:NM_001020819[1,3]-FBL:NM_001436[8,9];MYADM:NM_001020820[1,3]-FBL:NM_001436[8,9];MYADM:NM_001020821[1,3]-FBL:NM_001436[8,9];MYADM:NM_001290188[1,3]-FBL:NM_001436[8,9];MYADM:NM_001290189[1,3]-FBL:NM_001436[8,9];MYADM:NM_001290190[1,3]-FBL:NM_001436[8,9];MYADM:NM_001290191[1,3]-FBL:NM_001436[8,9];MYADM:NM_001290192[1,3]-FBL:NM_001436[8,9];MYADM:NM_001290193[1,3]-FBL:NM_001436[8,9];MYADM:NM_001290194[1,2]-FBL:NM_001436[8,9];MYADM:NM_138373[1,3]-FBL:NM_001436[8,9]; geneB_transcripts=NM_001436 ,,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,0,0,0, MV4_11_RNAseq_1 LOC101929162 chr12 108113861 - intron PIGK chr1 77595394 - intron ? 0 83 64 152 0.480 0.940 1 1323 0.000 0.240 69 58 0 422 CCGCTGAATTTACTCCCGTGCCATAAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCCTTTTAATTACATTTATTTTAATGCTGAATTTACTCCCGTGCCATAAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTTCTGGGCAACCTCCTCTTCTGGTTTAGGAACAATCTGTTCCTTTTCCGTAAGGATCATCT CTX 1.41 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 STMN2 chr8 80483505 + intron HUWE1 chrX 53563628 - coding > 0 3 68 154 0.870 0.090 1 114 0.110 0.040 70 88 0 141 ATGCTTTCTTCTCCTCCATGGTCTGGAAGCGGCCATGGCCAAACTTGAAGGTGGTGTCAATGAACTTAAGTAATGAAGAATCGATTGTATATAGTATTTGAAGGAGAAGAAGGGCAGGATGCTGGCGGGCTCCTGCGGGAGTGGTATATGATCATCTCTCGAGAGATGTTTAACCCTATGTATGCCTTGTTCCGTACCTCACCTGGTGATCGAGTCACCTACACCATCAATCCATCTTCCCA CTX 1.36 LQ 0 NLoss 3 NM_031407 4046 tuple 12138 13125 geneA_no_transcript_IDs_found geneB_transcripts=NM_031407 MV4_11_RNAseq_1 NA chr5 49909886 - intergenic NA chr5 49790542 - intergenic ? 6 11 140 35 0.000 0.000 124 26 0.040 0.340 140 140 160 31 TTATAAGACTCTTTTTTTCCAGAGATGGGAATCTTGCTATGTTGTCCACTCTGGAGTGCAGTGGCTATTCACAGGCTTGATCATTGCATACTACAGTCTTGAACTCCTGGACTCAAGTCTCCCAGTGGCTGGGACTACAGCTAGATGATGATATTCTGATATATGAGATGCAAG DEL 1.30 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 NUDT4,NUDT4P2,NUDT4P1 chr12 93795703 - 3utr GPATCH1 chr19 33617552 + coding > 5 0 307 68 0.520 0.000 43 1 0.040 0.000 308 316 381 170 GTCAGGATTCTTACATCAATTATCTCAAATGAGACCATGCAAAGCAATTCAGTGTATACAACAATCATTTTTCCCCTTCAGTTCTGCTGCTTTATACAACAGTGTGATTGACAGAAAATTGGATGGCATGTGCCTGGTCAGAAAATGTCATCTGTTTACAAAATAACATCATGCAGCACAGTTTCTACTTTGTCTGCAAGTCAATTCACAAAAACTACTTATTTTCTGTTTTTTATTTGGGAGGCACATGGAACTGAAAAATTTAGCTGCCCAATTTTATTCAACTACCCCACCAAAAAAAAAAAAAAAAATCACAAAGTAGTAGCTCCGAGAGTTCCGACAGCAGCGACAGCCAGAGTGACGAGGAAACCGCAGACGTGTCG CTX 1.30 LQ 0 NLoss ,,,, NM_001301022,NM_001301023,NM_001301024,NM_019094,NM_199040 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_018025,NM_018025,NM_018025,NM_018025,NM_018025 ,,,, ,,,, ,,,, 2678,2678,2678,2678,2678 2796,2796,2796,2796,2796 ,,,, ,,,, ,,,, ;;;; geneB_blat_issues=too_many_mismatches;geneB_anchor_fail_but_found_blat_hit=NM_018025 geneB_transcripts=NM_018025 ,,,, ,,,, MV4_11_RNAseq_1 C5orf46 chr5 147302386 - intron JAK1 chr1 65305457 - coding > 0 3 65 160 0.680 0.050 1 126 0.020 0.060 69 64 3 71 GGCTTCTGCTTCTCTTCCCGTGAACCCTTCTCTTTCCGTGGTGTGTCCTTTTTAGGTTGGGTCTCTGCAGGTATGACCCCGAAGGGGACAATACAGGGGAGCAGGTGGCTGTTAAATCTCTGAAGCCTGAGAGTGGAGGTAACCACATAGCTGATCTGAAAAAGGAAATCGAGATCTTAAGGAACCTCTATCATGAGAACATTGTGAAGTACAAAGGAATCTGC CTX 1.22 LQ 0 NLoss 0 NM_002227 891 tuple 2671 3465 geneA_no_transcript_IDs_found geneB_transcripts=NM_002227 MV4_11_RNAseq_1 ZDHHC14 chr6 157786362 - intron LGR6 chr1 202222926 + intron ? 0 3 69 114 0.680 0.990 1 152 0.000 1.000 76 78 0 6 GAAATATGGAATTATTTCTGACACATGAAGCCCACTAAACTATGCTTTCTTATAATGCATATTTCTTCTCAGTTTATTTTTTATTTTATTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTC CTX 1.21 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 CSTA chr3 122060482 + 3utr MAT2A chr2 85771225 - 3utr ? 3 0 316 73 0.030 0.660 19 1 0.100 0.000 317 325 2583 1867 CCAGGAGATTGTTGATAAGGTTAAACCACAGCTTGAAGAAAAAACAAATGAGACTTACGGAAAATTGGAAGCTGTGCAGTATAAAACTCAAGTTGTTGCTGGAACAAATTACTACATTAAGGTACGAGCAGGTGATAATAAATATATGCACTTGAAAGTATTCAAAAGTCTTCCCGGACAAAATGAGGACTTGGTACTTACTGGATACCAGGTTGACAAAAACAAGGATGACGAGCTGACGGGCTTTTAGCAGCATGTACCCAAAGTGTTCTGATTCCTTCAACTGGCTACTGAGTCATGATCCTTGCTGATAAATATAACCACCAATTATGACTTTGGAGCGTTGGGTGATAGGGCACAAAGGTTCAATTTCAAAGCATTATTTACTACAGTGTTG CTX 1.19 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 TBC1D20 chr20 461768 - intron LARP1 chr5 154194460 + 3utr > 0 8 66 379 0.000 0.020 1 101 0.000 0.100 66 75 47 168 CTAAACCATAACTGTGCTGGGAAGAAGTTGTGCCATGAAGGTCTTTAATTTTTTTTAATAAAAACAAAAGACCAAAAAAAAAAAAAAAAATCAGAAAACCCCCACCTAATCCACAGAAAGTAATGTCTTTCCCCTCCCCTTGGAATTTTTGTTTTGTTTTTGGAAATAATATTTTTTTAAAAGTTGCCTTATTGTGGAGCGGGAATCTGAAATACCCAAATGCCTGTTTTCCTCGGTGGAGTCAACCCGAAGAGCTCCCACCTTCTCTGGATGTGCCTGGGCTTGGACTGGCTAGAATCTTTCTCTGGACTGTTGCATGTACAGTGCCTCCATCCTGGAGGCAAGAGAGTTGGGAGTGGCTCGAATCAGAGCCGTGCCCAAGATATACCTGCTGTTGCATCGTTTGAAGCTGACGTCCTGTGTCTGTACACTGCTGCCACTGTTGTGTCCTCGCG CTX 1.12 LQ 0 other NM_015315 3060 geneB_no_inframe_contig_found geneB_transcripts=NM_015315;geneb_utr_codons=13 MV4_11_RNAseq_1 HSD17B8 chr6 33174227 + coding KIF13A chr6 17952855 - intron > 3 0 76 59 -0.090 0.940 155 1 0.020 0.340 145 183 188 0 GCAGAGTCCAGGGTCCTTGAGGCAGTTACATGAAAAGACCTCCAGTGACTTCCACTGAGGACCCTGAGGATGTGGCAGATGTGGTCGCATTCTTGGCATCTGAAGATAGTGGATACATCACAGGGACCTCAGTGGAAGTCACTGGAGGTCTTTTCATGTAACTGCCTCAAGGACCCTGGACTCTGTCACCCAGACTGGAGTGCAGTGAGTGGTGCGATCATAGCTTACTGCAGCCTGAAACTCCTG ITX 1.09 LQ 0 CLoss ,,,, NM_014234,NM_014234,NM_014234,NM_014234,NM_014234 ,,,, ,,,, ,,,, 769,769,769,769,769 ,,,, ,,,, NM_001105566,NM_001105567,NM_001105568,NM_001243423,NM_022113 ,,,, ,,,, ,,,, 146,146,146,147,146 5313,5274,5250,213,5418 ,,,, ,,,, ,,,, ;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001105566,NM_001105567,NM_001105568,NM_001243423,NM_022113 ,,,, ,,,, MV4_11_RNAseq_1 FAIM3 chr1 207081598 + intron NFIC chr19 3465146 + 3utr > 0 4 66 136 0.950 0.000 1 149 0.010 0.060 67 65 1 75 CAAATACACAGAGGTCCTCAAGACCCACGGACTCCTGGTCTGAGCCCAATAAAGACTGTTAATTCCTTTAAAAAAAAAAAAAAAAAAAAAAAGATACAAGAAAAACCTTTAAAAAAATTCCATGTTTCCTAATTTGCACGAAATTTTCTACCACAAGATGTGCCTTGCCTTCCGAGAATAAGTATTACCTTTAAACAATAT CTX 1.08 LQ 0 other ,,,,,,,,,,,,,, NM_001142473,NM_001142473,NM_001142473,NM_001142473,NM_001142473,NM_001193338,NM_001193338,NM_001193338,NM_001193338,NM_001193338,NM_005449,NM_005449,NM_005449,NM_005449,NM_005449 ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, NM_001245002,NM_001245004,NM_001245005,NM_005597,NM_205843,NM_001245002,NM_001245004,NM_001245005,NM_005597,NM_205843,NM_001245002,NM_001245004,NM_001245005,NM_005597,NM_205843 ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, 1527,1320,1293,1287,1500,1527,1320,1293,1287,1500,1527,1320,1293,1287,1500 ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ;;;;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001245002,NM_001245004,NM_001245005,NM_005597,NM_205843;geneb_utr_codons=13 ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, MV4_11_RNAseq_1 JAK1 chr1 65305457 + coding EEF1G,MIR3654,MIR6747 chr11 62334472 - coding ? 3 0 160 69 0.050 0.660 126 0 0.060 0.000 161 156 71 31719 GCAGATTCCTTTGTACTTCACAATGTTCTCATGATAGAGGTTCCTTAAGATCTCGATTTCCTTTTTCAGATCAGCTATGTGGTTACCTCCACTCTCAGGCTTCAGAGATTTAACAGCCACCTGCTCCCCTGTATTGTCCCCTTCGGGGTCATACCTGCAGAGACCCAACCTAAAAAGGACACACCACGGAAAGAGAAGGGTTCACGGGAAGAGAAGCAGAAGCC CTX 1.07 LQ 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 FAM172A,MIR2277 chr5 93018877 - intron HNRNPA1,HNRNPA1P10 chr12 54678087 + coding > 9 0 341 156 0.500 0.980 53 0 0.120 0.000 342 354 536 17718 ATTACGAAGGCAGTCCAATTAAAGTAACACTGGCAACTTTGAAAATGTCTGTACAGCCAACGGTTTCCCTTGGGGGCTTTGAAATAACACCACCAGTGGTCTTAAGGTTGAAGTGTGGTTCAGGGCCAGTGCATATTAGTGGACAGCACTTAGTAGCTGTGGAGGAAGATGCAGAGTCAGAAGATGAAGAGGAGGAGGATGTGAAACTCTTAAGTATATCTGGAAAGCGGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTTGCTGCTGATGAAGATGATGACGATGATGATGAAGAGGATGATGATGAAGATGATGACGATGATGATGAAGAGGATGTGGCAGAAGATTTTAATTAGGAAACAAAGCTTAGCAGGAGAGGAGAGCCAGAGAAGTGACAGGGAAGCTACAGGTTACAACAGATTTGTGAACTCAGCCAAGCACAGTGGTGGCAGGGCCTAGCTGCTACAAAGAAGACATGTTTTAGACAAATA CTX 1.06 LQ 0 NLoss 0,0,0,0,0,0,0,0 NM_001163417,NM_001163418,NM_032042,NM_001163417,NM_001163418,NM_032042,, ,,,,,,, 9,8,10,9,8,10,, ,,,,,,, 971,779,1109,971,779,1109,, ,,,,,,, ,,,,,,, NM_002136,NM_002136,NM_002136,NM_031157,NM_031157,NM_031157,NM_002136,NM_031157 318,318,318,370,370,370,318,370 9,9,9,10,10,10,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 953,953,953,1109,1109,1109,953,1109 963,963,963,1119,1119,1119,963,1119 119,119,119,119,119,119,, ,,,,,,, LRRQSN*SNTGNFENVCTANGFPWGL*NNTTSGLKVEVWFRASAY*WTALSSCGGRCRVRR*RGGGCETLKYIWKAVCPWRW*QGSTEKSKTCC**R**R***RG***R**R***RGCGRRF*LGNKA*QERRAREVTGKLQVTTDL*TQPSTVVAGPSCYKEDMF*TN,LRRQSN*SNTGNFENVCTANGFPWGL*NNTTSGLKVEVWFRASAY*WTALSSCGGRCRVRR*RGGGCETLKYIWKAVCPWRW*QGSTEKSKTCC**R**R***RG***R**R***RGCGRRF*LGNKA*QERRAREVTGKLQVTTDL*TQPSTVVAGPSCYKEDMF*TN,LRRQSN*SNTGNFENVCTANGFPWGL*NNTTSGLKVEVWFRASAY*WTALSSCGGRCRVRR*RGGGCETLKYIWKAVCPWRW*QGSTEKSKTCC**R**R***RG***R**R***RGCGRRF*LGNKA*QERRAREVTGKLQVTTDL*TQPSTVVAGPSCYKEDMF*TN,LRRQSN*SNTGNFENVCTANGFPWGL*NNTTSGLKVEVWFRASAY*WTALSSCGGRCRVRR*RGGGCETLKYIWKAVCPWRW*QGSTEKSKTCC**R**R***RG***R**R***RGCGRRF*LGNKA*QERRAREVTGKLQVTTDL*TQPSTVVAGPSCYKEDMF*TN,LRRQSN*SNTGNFENVCTANGFPWGL*NNTTSGLKVEVWFRASAY*WTALSSCGGRCRVRR*RGGGCETLKYIWKAVCPWRW*QGSTEKSKTCC**R**R***RG***R**R***RGCGRRF*LGNKA*QERRAREVTGKLQVTTDL*TQPSTVVAGPSCYKEDMF*TN,LRRQSN*SNTGNFENVCTANGFPWGL*NNTTSGLKVEVWFRASAY*WTALSSCGGRCRVRR*RGGGCETLKYIWKAVCPWRW*QGSTEKSKTCC**R**R***RG***R**R***RGCGRRF*LGNKA*QERRAREVTGKLQVTTDL*TQPSTVVAGPSCYKEDMF*TN,, FAM172A:NM_001163417[1,9]-HNRNPA1:NM_002136[9,10];FAM172A:NM_001163418[1,8]-HNRNPA1:NM_002136[9,10];FAM172A:NM_032042[1,10]-HNRNPA1:NM_002136[9,10];FAM172A:NM_001163417[1,9]-HNRNPA1:NM_031157[10,11];FAM172A:NM_001163418[1,8]-HNRNPA1:NM_031157[10,11];FAM172A:NM_032042[1,10]-HNRNPA1:NM_031157[10,11];; geneB_transcripts=NM_002136,NM_031157;geneb_utr_codons=6 ,,,,,,, 1,1,1,1,1,1,, MV4_11_RNAseq_1 ELOVL7 chr5 60057851 + intron CEP97 chr3 101485784 + 3utr > 0 4 56 137 0.720 0.000 1 149 0.010 0.210 60 64 0 43 TCTGCTAGTGTGGAGATAAATCATATTATGGCCAAGGGTCATGATGGCAGGAGTAATCAGAGGTGTTCTTGTTTTTTAAAGAGATGGAGGCTGGCTCTGTTGGTGCGGTGCCATGATCATAGTTCACTATAACCTCGAACTCCTGGCTCAAGTGATCTCCCACTTCAGCCTCCCGAGTATCTGGGATTATAAGCAAGAGCC CTX 1.00 LQ 0 other ,,, NM_001104558,NM_001297617,NM_001297618,NM_024930 ,,, ,,, ,,, ,,, ,,, ,,, NM_024548,NM_024548,NM_024548,NM_024548 ,,, ,,, ,,, ,,, 2598,2598,2598,2598 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_024548;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 CROCC chr1 17279278 - intron PSRC1 chr1 109822633 - 3utr > 0 4 55 137 0.550 0.000 1 139 0.010 0.030 57 57 0 191 TGATTTTTAGCTTAGGGGAGGGTCCGACAGCTGTGGAAGAGGGATTGGGGTTGGGATGGAGTAGAGACCATGGGAAATGGGGTGGATTAGGATTGAGCTGGAGAAGACTTAAACTCTCTGGGTTGAAAGAAGATTAGGGGAAAAGAGGTCACCTTCCAGCAGTGAAATGAACAAATAGAAGATGAGAAGTACAG INS 1.00 LQ 0 other ,, NM_014675,NM_014675,NM_014675 ,, ,, ,, ,, ,, ,, NM_001005290,NM_001032291,NM_032636 ,, ,, ,, ,, 933,1002,1002 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001005290,NM_001032291,NM_032636;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 ARHGEF15 chr17 8199740 - intron CDK6 chr7 92235963 - 3utr > 0 4 54 234 0.530 0.000 1 158 0.070 0.010 70 74 5 426 AATGATGTTAGCTGTGGCCACTGTGGATTTTTCGCAAGAACATTAATAAACTAAAAACTTCAAAAAAAAAAAAAAAAAAAAAAAAATCTAATTTGGAAATTTGACTTGTTAGTTTCTGTGTTTGAAATCATGGTTCTAGAAATGTAGAAATTGTGTATATCAGATACTCATCTAGGCTGTGTGAACCAGCCCAAGATGACCAACATCCCCACACCTCTACATCTCTGTCCCCTGTATCTCTTCCTTTCTACCACTAAAGTGTTCCCTGCTACCATCCTGGCTTGTCCACATGGTGCTCTCCATCTTCC CTX 1.00 LQ 2 other , , , , , , , , NM_001145306,NM_001259 , , , , 981,981 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001145306,NM_001259;geneb_utr_codons=13 , , MV4_11_RNAseq_1 POLR3E chr16 22321510 + intron NA chr1 243138577 - intergenic > 4 0 144 57 0.000 0.920 123 1 0.040 0.010 145 142 149 0 CTACCACGCAGATGAGCCTTGAGAACATTGTGCTAAGTGAAAGAAGCCACATGCTTCTTCACTCGCAGCTACGCGCTGTGTGATTACGTCTCAGTCAGCGACCGACCACATACTCAACGGTGGTCCCATAACATTATAATGGAGATGGGCATTTTGTTTATGAGCAAGGTGGGTCTCAGAGGTGATCGGCGATCAGAGGN CTX 1.00 LQ 0 other ,,,, NM_001258033,NM_001258034,NM_001258035,NM_001258036,NM_018119 ,,,, ,,,, ,,,, 364,256,256,364,364 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ;;;; geneB_no_transcripts ,,,, ,,,, MV4_11_RNAseq_1 PABPC1,MIR7705 chr8 101715147 - 3utr PABPC1P2 chr2 147347442 + 5utr > 119 0 479 50 0.000 0.870 1990 1 0.390 0.010 479 513 6332 0 AGTTAACAGTGCCACCGGTGTTCCAACTGTTTAAAATTGATCAGGGACCATGAAAAGAAACTTGTGCTTCACCGAAGAAAAATATCTAAACATCGAAAAACTTAAATATTATGGAAAAAAAACATTGCAAAATATAAAATAAATAAAAAAAGGAAAGGAAACTTTGAACCTTATGTACCGAGCAAATGCCAGGTCTAGCAAACATAATGCTAGTCCTAGATTACTTATTGATTTAAAAACAAAAAAACACAAAAAAATAGTAAAATATAAAAACAAATTAATGTTTTATAGACCCTGGGAAAAAGAATTTTCAGCAAAGTACAAAAATTTAAAGCATTCCTTTCTTTAATTTTGTAATTCTTTACTGTGGAATAGCTCAGAATGTCAGTTCTGTTTTAAGTAACAGAATTGATAACTGAGCAAGGAAACGTAATTTGGATTATAAAATTCTTGCTTTAATAAAAATTCCTTAAACAGTGAAAAAAAAAAACAAAAAAAAAATAGTAAAATATAAAAACAAATTAATGTTTTATAGACCCTGGGAAAAAGAATTTTCAGCAAAG CTX 1.00 LQ 0 other NM_002568 geneB_no_transcripts MV4_11_RNAseq_1 LOC102467655 chr5 67455639 + intron CPSF7 chr11 61170610 - 3utr > 0 3 55 144 0.800 0.000 1 104 0.010 0.040 59 52 0 131 GGCAGGCGGTGGGCTGGACACGGCTTCAAATACTGCCACATCTGCTTGTGATGGCACATTCCCTTGGGACAGAGGCTACAGGTTGGAGCTTTTTTTCCCCTGTCCCCCAACCCCATCCCCACCTCCACTTCAGAACATGGCACCCCACCCAACTGGCCAAGTGTTAAGTGATGTGCTTATTGAGAGCAACTCCGGGC CTX 1.00 LQ 0 other ,, ,, ,, ,, ,, ,, ,, ,, NM_001136040,NM_001142565,NM_024811 ,, ,, ,, ,, 1416,1389,1545 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001136040,NM_001142565,NM_024811;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 NA chr7 131347298 + intergenic CPSF7 chr11 61170610 - 3utr > 0 3 55 144 0.800 0.000 1 104 0.010 0.040 57 52 1 131 GGCAGGCGGTGGGCTGGACACGGCTTCAAATACTGCCACATCTGCTTGTGATGGCACATTCCCTTGGGACAGAGGCTACAGGTTGGAGCTTTTTTTCCCCTGTCCCCCAACCCCATCCCCACCTCCACTTCAGAACATGGCACCCCACCCAACTGGCCAAGTGTTAAGTGATGTGCTTATTGAGAGCAACTCCGGGC CTX 1.00 LQ 0 other ,, ,, ,, ,, ,, ,, ,, ,, NM_001136040,NM_001142565,NM_024811 ,, ,, ,, ,, 1416,1389,1545 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001136040,NM_001142565,NM_024811;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 NA chr8 55120413 - intergenic TSPAN11 chr12 31102325 + intron > 29 0 319 56 0.000 0.990 701 1 0.260 0.010 320 321 321 0 CTCAGTAATTAAATAACATTTTAATTAAATGTTTTAAAAAATCAAAATTAGGCCGGGCAAAGTGACTCATGCCTGTAATCCCAGCACTTTGGAAGGCCAAGGTGGGCAAATCACGAGGTCAAGAAATAGAGACCACCCTGGCGAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCGTGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATAGCTTGAACCTGGGAGGTTGCAGTGAGCCAAGATCATGCCACCACACTCCAGCTTGGTGACAAAGTGAGACTCCATAGTTCCACATGGCTGGGGAGGCCTCAGAATTATGGTGGGAGGCAAAAGGCACTTCTTG CTX 1.00 LQ 0 other NM_001080509 762 geneB_no_inframe_contig_found geneB_transcripts=NM_001080509;geneb_utr_codons=4 MV4_11_RNAseq_1 SSTR1 chr14 38649516 + intron NA chr8 55120413 + intergenic > 0 29 56 319 0.990 0.000 1 701 0.010 0.260 58 59 0 321 CAAGAAGTGCCTTTTGCCTCCCACCATAATTCTGAGGCCTCCCCAGCCATGTGGAACTATGGAGTCTCACTTTGTCACCAAGCTGGAGTGTGGTGGCATGATCTTGGCTCACTGCAACCTCCCAGGTTCAAGCTATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCACGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTCGCCAGGGTGGTCTCTATTTCTTGACCTCGTGATTTGCCCACCTTGGCCTTCCAAAGTGCTGGGATTACAGGCATGAGTCACTTTGCCCGGCCTAATTTTGATTTTTTAAAACATTTAATTAAAATGTTATTTAATTACTGAG CTX 1.00 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr8 55120413 - intergenic LINC00871 chr14 46902610 + intron > 29 0 319 56 0.000 0.990 701 1 0.260 0.010 320 321 321 0 CTCAGTAATTAAATAACATTTTAATTAAATGTTTTAAAAAATCAAAATTAGGCCGGGCAAAGTGACTCATGCCTGTAATCCCAGCACTTTGGAAGGCCAAGGTGGGCAAATCACGAGGTCAAGAAATAGAGACCACCCTGGCGAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCGTGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATAGCTTGAACCTGGGAGGTTGCAGTGAGCCAAGATCATGCCACCACACTCCAGCTTGGTGACAAAGTGAGACTCCATAGTTCCACATGGCTGGGGAGGCCTCAGAATTATGGTGGGAGGCAAAAGGCACTTCTTG CTX 1.00 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 HSP90B1,MIR3652 chr12 104341169 + coding NA chr6 164331830 - intergenic > 27 0 131 45 0.000 0.000 692 1 0.030 0.010 136 132 7856 0 AGAATGCTTCGCCTCAGTTTGAACATTGACCCTGATGCAAAGGTGGAAGAAGAGCCCGAAGAAGAACCTGAAGAGACAGCAGAAGACACAACAGAAGACACAGAGCAAGACGAAGATAGAAGAGCCCGAAGAAGAACCTGAAGAGACAGCAGAAGACACAACAGAAGACACAGAGCAAGACGAAG CTX 1.00 LQ 0 CLoss NM_003299 2343 geneB_no_transcripts MV4_11_RNAseq_1 NA chr1 230713452 - intergenic PDIA4 chr7 148718204 - coding > 0 6 55 337 0.970 0.000 1 116 0.010 0.020 57 56 0 600 GGAAGAAGAAGAAGAGGAAGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGATGATGATGAGGAAGAAGACGACTTGGAAGTTAAGGAAGAAAATGGAGTCTTGGTCCTAAATGATGCAAACTTTGATAATTTTGTGGCTGACAAAGACACAGTGCTGCTGGAGTTTTATGCTCCATGGTGTGGACATTGCAAGCAGTTTGCTCCGGAATATGAAAAAATTGCCAACATATTAAAGGATAAAGATCCTCCCATTCCTGTTGCCAAGATCGATGCAACCTCAGCGTCTGTGCTGGCCAGCAGGTTTGATGTGAGTGGCTACCCCACCATCAAGATCCTTAAGAAGGGGCAGGCTGTAGACTACGAGGGCTCCAGAACCCAGGAAGAAATTG CTX 1.00 LQ 0 NLoss 0 NM_004911 42 tuple 124 1938 geneA_no_transcript_IDs_found geneB_transcripts=NM_004911 MV4_11_RNAseq_1 CYP27C1 chr2 127967294 - intron SERINC2 chr1 31897558 + coding > 0 4 51 106 0.950 0.000 1 193 0.010 0.100 55 55 0 53 CAAAATCTGATATCCTGTCTTCCACTTGGTCAATTTGGCTATTGATACCTGTGTAGGATCCCCACCGTCCTGCAGGGCCACATCGACTGTGGCTCCCTGCTTGGCTACCGCGCTGTCTACCGCATGTGCTTCGCCACGGCGGCCTTCTTCTTCTTTTTCAC CTX 1.00 LQ 0 NLoss 3,3,3,3,3 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_001199037,NM_001199038,NM_001199039,NM_018565,NM_178865 81,86,22,81,77 ,,,, blat,blat,blat,blat,blat 242,257,65,242,230 1380,1395,1203,1380,1368 ,,,, ,,,, ,,,, ;;;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001199037,NM_001199038,NM_001199039,NM_018565,NM_178865 ,,,, ,,,, MV4_11_RNAseq_1 NA chr2 148172290 + intergenic SERINC2 chr1 31897558 + coding > 0 4 51 106 0.950 0.000 1 193 0.010 0.100 55 55 0 53 CAAAATCTGATATCCTGTCTTCCACTTGGTCAATTTGGCTATTGATACCTGTGTAGGATCCCCACCGTCCTGCAGGGCCACATCGACTGTGGCTCCCTGCTTGGCTACCGCGCTGTCTACCGCATGTGCTTCGCCACGGCGGCCTTCTTCTTCTTTTTCAC CTX 1.00 LQ 0 NLoss 3,3,3,3,3 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_001199037,NM_001199038,NM_001199039,NM_018565,NM_178865 81,86,22,81,77 ,,,, blat,blat,blat,blat,blat 242,257,65,242,230 1380,1395,1203,1380,1368 ,,,, ,,,, ,,,, ;;;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001199037,NM_001199038,NM_001199039,NM_018565,NM_178865 ,,,, ,,,, MV4_11_RNAseq_1 OLA1 chr2 174939741 - 3utr LOC100287072 chr17 20680213 + intergenic > 12 0 320 40 0.000 0.000 513 1 0.040 0.010 321 348 415 0 GTTGGGGAGATGGGAATCTTTGACAAACAAATTATTTTTATTTGTTTTAAAATTAAAATACTGTGTACCCCCCCCCCCCATGAAATGCAGGTTCACTAAATGTGAACAGCTTTGCTTTTCACGTGATTAAGACCCTACTCCAAATTGTAGAAGCTTTTCAGGAACCATATTACTCTCATGATACTTCATTAATCTCCATCATGTATGCCAAGCCTGACACATTTGACAGTGAGGACAATGTGGCTTGCTCCTTTTTGAATCTACAGATAATGCATGTTTTACAGTACTCCAGATGTCTACACTCAATAAAACATTTGACAATGTGGCTTGCTCCTTTTTGAATCTACAGATAATGCATGTTTTACAGTACTCCAGATGTCTACACTCA CTX 1.00 LQ 0 other , NM_001011708,NM_013341 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 LOC101928682 chr16 87304398 + intergenic LYRM2 chr6 90346792 - 3utr > 0 4 44 127 0.940 0.000 1 134 0.010 0.020 46 44 0 363 CGGGTGTAGTGGCTCATGCTTGTAATCCCAGTACTTTAGGAGGCCAGCAGTTCTTAAAAGAAGAAAAAAACCACTAACAAATGGCCAGTAGATGCTGGACACAATCATTAGGGAAGTGTAAATCAAAACTACTATGAGGTCGGGTGTAGTGGCTCATGCTTGTAATCCCAG CTX 1.00 LQ 0 other NM_020466 267 geneB_no_inframe_contig_found geneB_transcripts=NM_020466;geneb_utr_codons=13 MV4_11_RNAseq_1 HSP90B1,MIR3652 chr12 104341205 + coding TGFBR3 chr1 92109564 + intergenic > 24 0 393 35 0.000 0.000 554 1 0.030 0.010 394 419 8537 0 AAAGCACAAGCGTACCAAACGGGCAAGGACATCTCTACAAATTACTATGCGAGTCAGAAGAAAACATTTGAAATTAATCCCAGACACCCGCTGATCAGAGACATGCTTCGACGAATTAAGGAAGATGAAGATGATAAAACAGTTTTGGATCTTGCTGTGGTTTTGTTTGAAACAGCAACGCTTCGGTCAGGGTATCTTTTACCAGACACTAAAGCATATGGAGATAGAATAGAAAGAATGCTTCGCCTCAGTTTGAACATTGACCCTGATGCAAAGGTGGAAGAAGAGCCCGAAGAAGAACCTGAAGAGACAGCAGAAGACACAACAGAAGACACAGAGCAAGACGAAGATGAAGAAATGGATGTGGGAACAGATGAAGAAGAAGAAACAGCAGAAGACACAGAGCAAGACGAAGATGAAGAAATGGATGTGGGAACAGATGAAGAAGAAGAAAC CTX 1.00 LQ 0 CLoss 0,0,0 NM_003299,NM_003299,NM_003299 ,, ,, ,, 2379,2379,2379 ,, ,, NM_001195684,NM_001195683,NM_003243 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 GFI1 chr1 92949721 - intron NA chr13 82264032 + intergenic > 3 0 118 42 0.000 0.890 134 1 0.130 0.010 119 127 188 0 CCCAGATGCGAGTTTCTCCTGGGGCGGGGGTTGGTCGTCTGTTGTTCCCCTCACTTTCCTGTCCCTTTGCTCTCCCACCTCCTTTCTCTGGCCTCTGCTGTCCCCAATCCCTCTGCTGTCCCCAATCCCACTGGCTGCTCTGAAAAGCCATCTTTGCATTGTTCCTCAT CTX 1.00 LQ 0 other , NM_001127216,NM_005263 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 GFI1 chr1 92949721 - intron ST6GALNAC1 chr17 74648166 - intron > 3 0 118 42 0.000 0.890 134 1 0.130 0.130 119 127 188 0 CCCAGATGCGAGTTTCTCCTGGGGCGGGGGTTGGTCGTCTGTTGTTCCCCTCACTTTCCTGTCCCTTTGCTCTCCCACCTCCTTTCTCTGGCCTCTGCTGTCCCCAATCCCTCTGCTGTCCCCAATCCCACTGGCTGCTCTGAAAAGCCATCTTTGCATTGTTCCTCAT CTX 1.00 LQ 0 other , NM_001127216,NM_005263 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 DPT chr1 168699893 + intron LYRM2 chr6 90346792 - 3utr > 0 4 43 127 0.950 0.000 1 134 0.010 0.020 45 44 0 363 CGGGTGTAGTGGCTCATGCTTGTAATCCCAGTACTTTAGGAGGCCAGCAGTTCTTAAAAGAAGAAAAAAACCACTAACAAATGGCCAGTAGATGCTGGACACAATCATTAGGGAAGTGTAAATCAAAACTACTATGAGGTCGGGTGTAGTGGCTCATGCTTGTAATCCCAG CTX 1.00 LQ 0 other NM_020466 267 geneB_no_inframe_contig_found geneB_transcripts=NM_020466;geneb_utr_codons=13 MV4_11_RNAseq_1 NA chr10 11697162 + intergenic LYRM2 chr6 90346792 - 3utr > 0 4 43 127 0.950 0.000 1 134 0.010 0.020 45 44 0 363 CGGGTGTAGTGGCTCATGCTTGTAATCCCAGTACTTTAGGAGGCCAGCAGTTCTTAAAAGAAGAAAAAAACCACTAACAAATGGCCAGTAGATGCTGGACACAATCATTAGGGAAGTGTAAATCAAAACTACTATGAGGTCGGGTGTAGTGGCTCATGCTTGTAATCCCAG CTX 1.00 LQ 0 other NM_020466 267 geneB_no_inframe_contig_found geneB_transcripts=NM_020466;geneb_utr_codons=13 MV4_11_RNAseq_1 CCAR1 chr10 70551081 + 3utr OLFML2B chr1 161995617 - intron > 5 0 92 35 0.000 0.000 337 1 0.060 0.010 93 87 691 0 TCAAAAATCCAAGGAGAATGGTGCCAGTGTATGATAAAATCCATGTAGTGATGAGGAATGGTGTTAAATAATGTAATATATAAAAATCATGAAATCCACACTGTTCTCAAGAAGGATAATGTAAAGAATGAAGACAAAGATCAAAAATCCAAGGAGAATGGTGCC CTX 1.00 LQ 0 other ,, NM_001282959,NM_001282960,NM_018237 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 CCDC88A chr2 55561560 - coding NA chr3 104808722 + intergenic > 7 0 302 32 0.000 0.000 242 1 0.040 0.010 303 313 181 0 AGAGAATTCCCAACTTGATGAGGAAAACTTAGAACTGCGAAGGAATGTAGAATCTTTGAAGTGTGCAAGCATGAAAATGGCTCAGCTACAGCTAGAAAACAAAGAACTGGAAAGTGAAAAAGAGCAACTTAAGAAGGGTTTGGAGCTCCTGAAAGCATCTTTCAAGAAAACAGAACGCTTAGAAGTTAGCTACCAGGGTTTAGATATAGAAAATCAAAGACTGCAAAAAACTTTAGAGAACAGCAATAAAAAAATCCAGCAATTAGAGAGTGAACTACAAGACTTAGAGATGGAAAATCAAAGACTGCAAAAAAACTTTAGAGAACAGCAATAAAAAAATCCAGCAG CTX 1.00 LQ 1 CLoss ,, NM_001135597,NM_001254943,NM_018084 ,, ,, ,, 2397,2397,2397 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 IL1RAP chr3 190367863 + 3utr HMCN1 chr1 185705382 + intron > 3 0 373 34 0.000 0.480 140 1 0.320 0.090 374 361 174 0 CTTAGTGGCCTTGAGAGTTGCTTTTGGCATTAATATTCTAAGAGAATTAACTGTATTTCCTGTCACCTATTCACTAGTGCAGGAAATATACTTGCTCCAAATAAGTCAGTATGAGAAGTCACTGTCAATGAAAGTTGTTTTGTTTGTTTTCAGTAATATTTTGCTGTTTTTAAGACTTGGAAAACTAAGTGCAGAGTTTACAGAGTGGTAAATATCTATGTTACATGTAGATTATACATATATATACACACGTGTATATGAGATATATATCTTATATCTCCACAAACACAAATTATATATATACATATCCACACACATACATTACATATATCTGTGTATATAAATCCACATGCACATGAAATATATATACATATCCACACACATACATTACATATATCTGTGTATATAAATCCACATGCACATTACATATCCAC CTX 1.00 LQ 0 other ,,, NM_001167928,NM_001167929,NM_001167931,NM_002182 ,,, ,,, ,,, ,,1345, ,,, ,,, NM_031935,NM_031935,NM_031935,NM_031935 ,,, ,,, ,,, 268,268,268,268 16908,16908,16908,16908 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_031935 ,,, ,,, MV4_11_RNAseq_1 CHMP3,RNF103-CHMP3,RNF103 chr2 86730971 - 3utr NA chr13 59513459 + intergenic > 4 0 141 37 0.000 0.910 134 1 0.100 0.010 148 146 323 0 CACTGTTACTACGCCTAGTCCCCAATGTTTACTTTTCTGGTCCTGTCCCTTTTCCCACCCTCCACCCTCAGGTAGGCCCCAGTATGTTATTCCTTTGTGTCCATGTTATTTCACTCCCACTTGTGAGAACATGGAATATTTGGTTTCCTGTCCCTTTTCCCACCCTCCACCCTCAGGTAGGCCC CTX 1.00 LQ 0 other ,,, NM_001005753,NM_001193517,NM_001198954,NM_016079 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_transcripts ,,, ,,, MV4_11_RNAseq_1 DNAH12 chr3 57410371 - intron JPX chrX 73218601 + intron > 0 4 39 162 0.970 0.000 1 66 0.030 0.020 41 33 0 116 TCCTGCCTCAGCCCCCCGAGTAGCTGAGATTACAGGTACTGGCTCCTGTATCACCCAGCTCTGGAGTTGAAAGAGCTCTTCATTCCTGAGTCTCCTGTACCACTGAGAATAGAAATACAAAAAAAATTCTAAAACTTGTATGGAACTACAAAAGACATTAAATAATCAAAGTAATCTTGAGCAACAAGGACACAG CTX 1.00 LQ 0 other NM_001291661 geneB_no_transcripts MV4_11_RNAseq_1 PPP4R2 chr3 73118216 - intergenic LOC101927967 chr2 77976653 - intron > 3 0 92 31 0.000 0.480 181 1 0.040 0.010 93 94 255 0 TTGGCAAAGTAATCTAGGCTCCAAGTTGAAATAAAAGAAAATCCTGAAGAGTGTACTGATTTTTAAAATGTGAAATAGTAAGATGTATTCTAATTTATATTTTATTGCATTATGAAAATAATACATTTGGCAAAGTAATCTAGGCTCCAAGTTGAA CTX 1.00 LQ 0 other 0 NM_174907 geneB_no_transcripts MV4_11_RNAseq_1 NDUFA11 chr19 5894688 - 3utr PARD3 chr10 35079914 - intron > 20 0 479 28 0.000 0.000 342 1 0.570 0.010 480 468 102 3 GTTTTTCGTCAGTACTGGGATATCCCCGATGGCACCGATTGCCACCGCAAAGCCTACAGCACCACCAGTATTGCCAGCGTCGCTGGCCTGACCGCCGCTGCCTACAGAGTCACACTCAATCCTCCGGGCACCTTCCTTGAAGGAGTGGCTAAGGTTGGACAATACACGTTCACTGCAGCTGCTGTCGGGGCCGTGTTTGGCCTCACCACCTGCATCAGCGCCCATGTCCGCGAGAAGCCCGACGACCCCCTGAACTACTTCCTCGGTGGCTGCGCCGGAGGCCTGACTCTGGGAGCACGCACGCACAACTACGGGATTGGCGCCGCCGCCTGCGTGTACTTTGGCATAGCGGCCTCCCTGGTCAAGATGGGCCGGCTGGAGGGCTGGGAGGTGTTTGCAAAACCCAAGGTGTGAGCCCTGTGCCTGCCGGGACCTCCAGCCTGCAGAATGCGTCCAGAAATAAATTCTGTGTCTGTGTGTGAGCCCTGTGCCTGCCGGGACCTCCAGCCTGCAGAATGCGCC CTX 1.00 LQ 0 other ,,,,,,,,,,,,,,,,,,,,, NM_001193375,NM_001193375,NM_001193375,NM_001193375,NM_001193375,NM_001193375,NM_001193375,NM_001193375,NM_001193375,NM_001193375,NM_001193375,NM_175614,NM_175614,NM_175614,NM_175614,NM_175614,NM_175614,NM_175614,NM_175614,NM_175614,NM_175614,NM_175614 ,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,, 314,314,314,314,314,314,314,314,314,314,314,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,, NM_001184785,NM_001184786,NM_001184787,NM_001184788,NM_001184789,NM_001184790,NM_001184791,NM_001184792,NM_001184793,NM_001184794,NM_019619,NM_001184785,NM_001184786,NM_001184787,NM_001184788,NM_001184789,NM_001184790,NM_001184791,NM_001184792,NM_001184793,NM_001184794,NM_019619 ,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,, 120,120,120,120,120,120,120,120,120,120,120,120,120,120,120,120,120,120,120,120,120,120 4062,4023,3960,3933,3822,3801,3735,3096,3003,2967,4071,4062,4023,3960,3933,3822,3801,3735,3096,3003,2967,4071 ,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,, ;;;;;;;;;;;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001184785,NM_001184786,NM_001184787,NM_001184788,NM_001184789,NM_001184790,NM_001184791,NM_001184792,NM_001184793,NM_001184794,NM_019619 ,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,, MV4_11_RNAseq_1 DHRS7C chr17 9706650 - intron MUC19 chr12 40962803 + coding > 0 4 38 147 0.980 0.000 1 58 0.050 0.360 38 35 1 53 AGCACTGTGGGAGGCCAAGGCGGGCGGATCACCTGAGGAAGACAGAATCTATGATTCAAAAAAATGTTGCTATACATGTAAGAATAATTGCAGATCTTCCCTTGTAAATGTGACTGTTATCTACAGTGGTTGCAAGAAAAGAGTTCAGATGGCAAAATGCACAGGGGAATGTGAAAAGACTG CTX 1.00 LQ 0 NLoss NM_173600 geneB_CDS_mapping_exception=NM_173600:-4;geneB_breakpoint_not_mapped_to_CDS=NM_173600 geneB_transcripts=NM_173600 MV4_11_RNAseq_1 LYRM2 chr6 90346550 - 3utr SLC5A1 chr22 32461228 - intron > 3 0 367 38 0.000 0.990 87 1 0.170 0.010 368 360 220 0 CAAAGCCCAGTCTTACTATTTATATGTACAGTATTTGGTGATAGAGAGCAAAGGAAAAACACATCAGAACAGTTGCCTTAACACTGAAAAACATACCCTGCATTTTGAAAATGTTTATGGATGTCTCAGCAGTTCTTAAAAGAAGAAAAAAACCACTAACAAATGGCCAGTAGATGCTGGACACAATCATTAGGGAAGTGTAAATCAAAACTACTATGAGGTCGGGTGTAGTGGCTCATGCTTGTAATCCCAGTACTTTAGGAGGCTGTGGTAGGTGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCTCATCTCTACTAAAAATACAAAAATTAGCTTGGTGTAGTGGCTCATGCTTGTAATCCCAGTACTTTAGGAG CTX 1.00 LQ 0 other , NM_020466,NM_020466 , , , , , , NM_000343,NM_001256314 , , , , , , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_000343,NM_001256314;geneB_transcript_strand_disagree=NM_000343;geneB_transcript_strand_disagree=NM_001256314;geneb_utr_codons=13 , , MV4_11_RNAseq_1 TFG chr3 100467808 + 3utr NA chr3 187649182 - intergenic > 7 0 379 29 0.000 0.660 146 1 0.720 0.010 380 397 29 0 CTCCAGTACTATTTTAATTTGTATTGAAGAAGTTCAGAAATTTAAAAGCAGAGCATTTTTTATGATATCATTGTTGGTGTTAATTGAAAGTATAATTTGCTGGAACACAAAGACCAAAATGAAAGTTTTTTCCTCCCTGCTTAAAAATGTAGCAGCTTCTTAGTTACTTTGGAACACTACTCTTACATGTATAAAGTGATTGACTTGACTTTCTAGCTTCCCTTGTCCGGAGGATATTAAAATGCTAGGGTGAGGTTTAGCCATCTTACTTGGCTTTTTACTATTAACATGATGTACTAAAGTAGAGCCCTTTGAGAATACAAGATATTATGTATAAAATGTAACACTGATGATAGGTTAATAAAGATGATTGAATCCAAAAAAAAAAAAAAGGGAAATGGATGATGTGGCCATAGAAGATGAAGTATTGGAACAGTTATT ITX 1.00 LQ 1 other ,,, NM_001007565,NM_001195478,NM_001195479,NM_006070 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_transcripts ,,, ,,, MV4_11_RNAseq_1 CHMP3,RNF103-CHMP3,RNF103 chr2 86730971 - 3utr NA chr2 189552157 + intergenic > 4 0 141 32 0.000 0.940 134 1 0.100 0.010 148 151 323 0 CACTGTTACTACGCCTAGTCCCCAATGTTTACTTTTCTGGTCCTGTCCCTTTTCCCACCCTCCACCCTCAGGTAGGCCCCAGTATGTTATTCCTTTGTGTCCATGTTATTTCACTCCCACTTGTGAGAACATGGAATATTTGGTTTCCTGTCCCTTTTCCCACCCTCCACCCTCAGGTAGGCCC ITX 1.00 LQ 0 other ,,, NM_001005753,NM_001193517,NM_001198954,NM_016079 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_transcripts ,,, ,,, MV4_11_RNAseq_1 PPP1R12A chr12 80167606 - 3utr NA chr4 43986623 + intergenic > 3 0 133 32 0.000 0.860 34 1 0.130 0.010 134 138 146 0 GGACAGCTACTGTGCTATATTGATTTTATTGGTAGTATTAAGCAGACCTTGTTTCTGCATGAAACTAGTTGCAAAACCCACTATTTTGGAAATAAAAATGTATTTTGACATATACAAATAAAATGAATAAAACTAAAAAAAAATAAAAATAGTCAGGCATGGTGGTAGGCC CTX 1.00 LQ 0 other ,,,, NM_001143885,NM_001143886,NM_001244990,NM_001244992,NM_002480 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ;;;; geneB_no_transcripts ,,,, ,,,, MV4_11_RNAseq_1 NA chr8 55104143 - intergenic ZFHX4-AS1 chr8 77505936 - intergenic > 4 0 122 33 0.000 0.990 128 1 0.070 0.010 123 123 232 0 GCAGCCTTGTTTCCATGAGATCAAACAGTTTTTGGAGTGTGCCCAGAACCAGGGTGACACCAACAAGCTCTGTGGGGCTTTCAATGAGGTTCTCAAACAGTGCAGACTTGCAAACAGATAGGCAGTTCCACATGGCTGGGGAGGCCTCAGAATTAT INS 1.00 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr2 199289561 - intergenic DCUN1D4 chr4 52757926 + coding > 0 3 28 206 0.750 0.000 1 54 0.010 0.180 29 24 0 71 TCAGCCTCCTGAGTAGCTGGGACTACAGGTAGTTATGCTTGTCCTAGCTTGGAAATTGGATGCACAAAACATGGGTTATTTTACTCTACAGGAGTGGTTAAAAGGAATGACTTCTCTCCAATGTGATACAACAGAAAAACTCAGAAATACTTTGGATTACTTAAGATCATTCTTAAATGATTCTACAAACTTTAAACTTATTTACAGATATGCGTTTGACTTTGCACGGG CTX 1.00 LQ 0 NLoss 3,3,3,3 ,,, ,,, ,,, ,,, ,,, ,,, ,,, NM_001040402,NM_001287755,NM_001287757,NM_015115 139,183,79,139 ,,, tuple,tuple,tuple,tuple 415,547,235,415 879,1011,699,774 ,,, ,,, ,,, ;;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001040402,NM_001287755,NM_001287757,NM_015115 ,,, ,,, MV4_11_RNAseq_1 DYNC1I2 chr2 172546770 + coding LOC442028 chr2 95578503 + intron > 5 0 218 30 0.000 0.930 64 1 0.050 0.010 219 240 633 0 CCGCGGAGCTGGTGGTGGCTACAGTTGGTGTTGGGGGCTTAGGCGAGGGACGTTACCGGGAAGTTGCAGGCGGGAGGACTCTTCCCCATCCAGTCACCTGACAGGTCACAAACATGTCAGACAAAAGTGAATTAAAGGCTGAGTTGGAACGTAAGAAGCAGCGACTGGCCCAAATCAGAGAGGAAAAGAAGAGAAAAGAAGAAGAAAGGAAAAAAAAAAGAAACAGGAAAGCAACGAAAGGAACGCAAGAACAGAATGAAGAAAGTCAG INS 1.00 LQ 0 CLoss ,,,,,, NM_001271785,NM_001271786,NM_001271787,NM_001271788,NM_001271789,NM_001271790,NM_001378 ,,,,,, ,,,,,, ,,,,,, 105,105,105,105,105,105,105 ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ;;;;;; geneB_no_transcripts ,,,,,, ,,,,,, MV4_11_RNAseq_1 AKNA chr9 117100671 - intron PARD3B chr2 205884305 + intron > 3 0 122 33 0.000 0.990 86 1 0.170 0.130 123 120 41 0 GAGGATGCCAGCCCTGGGCTAGGCACTGGGTTTAACTGTTGGAGGAACTGTCAGACTGTTTTCCACAGTGGCTCCACCATTTACATTCCCACCAGCAGTGCTGAGGATTCCAGTTTCTCCACCATTTACATTCCCACCAGCAGTGCTGAGAG CTX 1.00 LQ 0 other ,, NM_030767,NM_030767,NM_030767 ,, ,, ,, 4068,4068,4068 ,, ,, NM_057177,NM_152526,NM_205863 ,, ,, ,, 395,395,395 3411,3432,3315 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_057177,NM_152526,NM_205863 ,, ,, MV4_11_RNAseq_1 AKAP6 chr14 32954225 + intron CELF2 chr10 11373177 + 3utr > 0 5 26 130 0.700 0.000 1 91 0.030 0.020 28 26 37 482 TGGGTGCTTAGCTGTTAACTAAGTGTTTGTGGTTTCATCATGAGTCTTAATGTTCTTTGTTGATAAGACAAGTTTAGAATTGGTTTACTTAATACAAAAAAAAAAAAAAGAATTTCAAAAAAAAAAGTTGTTTGCTTAAAAAAAATTTCATGTGAG CTX 1.00 LQ 0 other ,,, NM_004274,NM_004274,NM_004274,NM_004274 ,,, ,,, ,,, 325,325,325,325 ,,, ,,, NM_001025076,NM_001025077,NM_001083591,NM_006561 ,,, ,,, ,,, ,,, 1473,1527,1467,1566 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001025076,NM_001025077,NM_001083591,NM_006561;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 E2F7 chr12 77412530 + intergenic HDAC2 chr6 114262931 - coding > 0 5 86 293 0.980 0.000 1 230 0.010 0.000 95 98 0 2222 GTTTGCAGTGAGCCGAGATAGCGCCGCTGCAGTCCGGCCTGGGTGAAAGAGCGAGACTGTCTCAAAAAAAAAAAAAAAGAAACAGAGGACAAAAAAACAGACGTTAAGGAAGAAGATAAATCCAAGGACAACAGTGGTGAAAAAACAGATACCAAAGGAACCAAATCAGAACAGCTCAGCAACCCCTGAATTTGACAGTCTCACCAATTTCAGAAAATCATTAAAAAGAAAATATTGAAAGGAAAATGTTTTCTTTTTGAAGACTTCTGGCTTCATTTTATACTACTTTGGCATGGACTGTATTTATTTTCAAATGGCTTTTTCGTTTTTGTTTTTCTTGGCAAGTTTTATTGTGAGTTTTTCTAATTATGAAGCAAAATTTCTTTTCTCC CTX 1.00 LQ 0 NLoss 0 NM_001527 460 tuple 1379 1467 geneA_no_transcript_IDs_found geneB_transcripts=NM_001527 MV4_11_RNAseq_1 LYRM2 chr6 90346550 - 3utr OR4B1 chr11 48219233 + intron > 3 0 367 33 0.000 1.000 87 1 0.170 0.010 368 365 220 0 CAAAGCCCAGTCTTACTATTTATATGTACAGTATTTGGTGATAGAGAGCAAAGGAAAAACACATCAGAACAGTTGCCTTAACACTGAAAAACATACCCTGCATTTTGAAAATGTTTATGGATGTCTCAGCAGTTCTTAAAAGAAGAAAAAAACCACTAACAAATGGCCAGTAGATGCTGGACACAATCATTAGGGAAGTGTAAATCAAAACTACTATGAGGTCGGGTGTAGTGGCTCATGCTTGTAATCCCAGTACTTTAGGAGGCTGTGGTAGGTGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCTCATCTCTACTAAAAATACAAAAATTAGCTTGGTGTAGTGGCTCATGCTTGTAATCCCAGTACTTTAGGAG CTX 1.00 LQ 0 other NM_020466 geneB_no_transcripts MV4_11_RNAseq_1 BST1 chr4 15669664 + intron FAM200B chr4 15682903 + intron > 231 236 388 292 0.000 0.000 6435 7847 1.000 0.050 388 388 362 369 CTTTTTAATAGAAAAATGAGAAGCAATTAATGATGAAGATATGATAAATAAAACATGAGTTGGCCAGAATATTTTTACTGATGTCTTCTCATTTGACTTCCTGGTATAAGATGGTCAATTTATCACGCCTGTAATCCCAGCACTTTGGGATGCCAATGTGGGCGGATCACCTGAGGTCAGGAGTTCGAGACTAGCCTGACCAACATGTAGAAACCCCGTCTCTAATAAAAATACAAAATTAGCCAGGCGTGGTGGCGGGTGCCTGTAATCCCAGCTACTCGGGAGGTTGTGGGAGGAGAATCGCTTGAACTCGGGAGGTGGAGGTTGCGGTGAGTCAAGATTGCGCCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTATCTCTTGGAGTGTATGAACCAGCGTCCTGGCCCCGCCAGGTCGGGGCTGGGGCGGGCGCGGGCCGGGAGCGCTTACCCCGCGGCAGGAGCGATTCAGCGCCACTACCTGCTTCGCCTGGTTGTGGTGTGGCTGCTGCGCCAACCGAAAGGCCTCCTTAATCCGCAGCAGTCTCTTTTCGCTCCCATGGCTCTGGGACTCTGTCCGGACTAGCCCTGTCCGCGCTCGGCTACATCCGGCCCGCCCACCAGCTCAGAGGCAGAGTTCTCCGCGGTGTCTCCTAGGGTTTCTTGTCAGN read_through 1428.20 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 SNORD6 chr11 93464919 - intron SNORA25 chr11 93464383 - intron > 4 151 468 193 0.000 0.000 70 5270 0.000 0.340 468 468 955 1497 AGAGTTGTAGCTTAAAATGTAGTTAATGTAGCTTCCTTATTACAGTGACAATTAGGAAAAAAGCTCAAATTATTGTACTTGTTAAAGGAATTTGAGAGGTTTGTGAAAGCATTTCTCAGCAATATTGCAAATTTGGGAATACGAGTTGTACAGTTCAGTCATAATTGCACTGCATGGTATCTGCACTCAGCAGTTTACACCTGCTAGGGTGTTCAAAGGTCAGTGCTATAGAAATTCAGTATCTGGCATCGTTGGTTTTCTTGGCTTTGTGCTTGTTAAACCTGGTATTTCTACTGATACAGTATTTGTGTAGGTTTCTCAGAGTGTTCAGTTTGATATACTCTAAAATAGTAAGCAATGCTTTTTTTTCCAGGGTGTCAAATTGAGAACCAGGTAGATCCCCACCACCTACAGTAAAAAGGACCCTAAAGTAAATTGGTTGAAGAAATTAGATCCCAAAGATTCTTGGTGAATTTTGAAGTCTTCATCAGTATATCCATATTAAAACGAGATGACAGAAGCCAAAGTAATTATGGGCAAACTTGAAGATAAATCTTTTGACTCCAGCTCTTTAGAGGATCTAAAGTGACCTTGATGGACAGTGGAAGAAATCACAACATGGAATTCCTCGAATAACAATTTATTGACTTTAAATAATTT read_through 527.00 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr1 66882743 + intergenic NA chr1 66905123 + intergenic ? 152 152 172 213 0.000 0.000 5571 4664 0.750 0.770 172 172 201 196 CTCTTCTCCCCACCTCCTCACCCAGCCTCTGGTAGCCATCATTCTACTCTCTACTTCTTTTTTTGAGGAACTTCCATTCAGTTTCCCATAATGGCTGTGAGTCTGGAGTTTGTTCCTGCCGGTGGGTTCGTGGTCTCGCTGACTTCAAGAATGAAGCTGCAGACGTTCGTGAGGAGAAAGCTGAAGCACCAGATGGTTAAAAGGACTGTTCAAGACAGCCTTGCAATTTTGACCAAGGAAGAAAGCTGAAGAGTGCTAGGGCAAGAGAGGAACTACGTCCAGAACAATTCATAATTCCAAATTCTCACTTCCATGATTTCAATGCTGAATGTGTACTTCTCTAGCTAAAAATACAATTGCTTAAGTAAAATCATCATTATTTAC read_through 511.75 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr6 159516761 - intergenic TAGAP chr6 159485970 - intron > 69 71 132 265 0.000 0.000 2146 2402 0.800 1.000 132 132 85 80 CCTGCAGCTGGGCCTGCCCCTCAAGCACGCTGAGCCTGTCCTTCACAGCCCCATGGTGCTGACCCAGGGCCCTGAGACCACCAGGAGGCACCTCTTCCTCTTCAGGGACTGGCTGGTCATTGCCAAGCAGAGGTCTTCCAAGAGCTACAGAGTCGAACAGAAGCTGCATCTATCTGGCGTGCAGGCTGTCACCTGTGACAGAGAGGAAAGGCAGGATGGGGACAAAGACCAGGATCTCACTATCAGTTTAGGAAATTCTCTGGTCTTCATGCTGGCTTCTGACCCTTGTGTCGCCGAGTTTCCGTGAGTGCCAGCAGTTTCAATTACAGGTTTACAAAGCTAAGATCTTCAGGAAGCCTCTGGTCCTTTCACTAACTCATGACTGTTACAACAAAG read_through 454.80 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr19 28237006 - intergenic NA chr19 28223876 - intergenic ? 95 99 375 422 0.000 0.000 3497 3399 0.650 0.590 375 375 146 166 CTGAAACTGGTGTAGGAACAACCTCAGTTCTGTGAAAGGCGGACGCAGCAGGACAGAATCTCCGTGGACATCTGTCTGGAGGAGCAATTTTACTGCGACATTTTAAAGAAACAAATTTAATTGATTTCCAAGGGTGTCCATCGCGCTTCCTTCACTGCCTTGATCATGTCGGGGTCACCACCTGCGGGGGTTTGTCCTGCAGACCCTGACTCAACGACGGATGAATAATGTACACTGACACAGATCTTATGCTTGTCAGTCCTGCTGAGCATCCAGGCCACTTACAGACTCCAAGAAGAGTCCTGTCAGCCACGGCTCTGACTTGTTGGCCCTCCCGGCATTTATTTAGCACACATTTAATGACAGAAGTCTCAGGCTGGAAACACTCTTTTTGTAGAACATACAAATGGACATTTCTAAGCACATTGAGGCCTATAATGAAAAATCAAATATCCCACAATGAAAACTAGAGGGAAGCTATCTGTGATAATGCTTTGTGGTGTATGGATTCATCTCACTGACTGAAACCTGAGTTTTGATTCACCAGGTTGGAAACTCTTTCTGCAGAATCTGCAAAGAAATATTTCTGAGCCCATTGAGGCCTACAGTGGAAAACTGAATATTCTGTGATAAAACTAGAAACACCCTATCTGTGAAAATGCTTTGTGATGTGTGGATTTTTCTCATCGAATGGAACCTCTGTTTTGACTCACAAGGGTGAAACACTATTTTAGTAGAATCTAGGAAGAAACATATCTGAGCCCATTTATGCCTACAGTGAGAAACTGAATACCCT read_through 344.80 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr5 49912674 + intergenic PARP8 chr5 49935089 + intron > 72 5 82 211 0.000 0.000 2842 12 0.210 0.110 82 82 188 240 CTAGCATTGTAAGGATGTTTATTGTCTTCTAATGTGTTTTCATACGTTTTCTCTCTGGGATCTTGAGTGAAACATGTGGATCTGGTTTTAAGGAATGAATGGCCATGTCAACTATTGGAAGCATCTTTGAATTGGAGCCTCTATGTTCAGGTTTCACCAGGTTTATGTTTTTAATTAATATCCTATTCAGCTTTCTGTAATTTCCACTGAGGTTTTAGTTCTGCAGGCTGCACAAGAAGCATGGCCCAAGCATCTGCTTCTGGTGAAAGCCTCACGTGCTGCTGCATTCATG read_through 285.40 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 C15orf27 chr15 76344408 - intron NRG4 chr15 76303627 - 5utr > 15 13 141 280 0.000 0.000 472 919 1.000 0.260 141 141 67 60 ATTCTCTCTCATACCAAGATACCTTTTGAGTGGCCACAAATTCTATTAAAGCAGAAGAAATAGTGGTGAACCATAAAAGAGAACCAGTTTCCTCTCTATTCTGCAATTTAGAGGAAAAATTTTCATCCAAGGACAGATCAGGTACTGTTTTTCAACCCTACTCTCTTGACCAAGAATGAAACTATTTACAAATTAAGATGCCAACAGATCACGAAGAGCCCTGTGGTCCCAGTCACAAGTCGTTTTGCCTGAATGGGGGGCTTTGTTATGTGATACCTACTATTCCCAGCCCATTTTGTAGGAAGTGAACTGATGCTGGCTTCTCTTTGTCTTATTCCAAGTTGGGCATGAGATTTTCCCTGCATTAGAAGGTTGTTGAGACCTGAAGCCTGGGAAGGTGCGTTGAAAACTATACAGGAG read_through 278.20 RT 0 upTSS 2 NM_138573 -18 tuple 348 geneA_no_transcript_IDs_found geneB_transcripts=NM_138573;geneb_utr_codons=13 MV4_11_RNAseq_1 FLJ46284 chr8 93694166 - intergenic NA chr8 93681195 - intergenic > 23 23 138 138 0.000 0.000 1427 1157 0.660 0.640 138 138 34 35 GGCAAGAAAAAGAATGAGAAAAAAGAAGCTCCCGTGGAAAGGGAATGGTGCTGAGAGTTCTCCTCCTGTCCAAAGGCAGATAGCTCTGCACGGAAAACACGATCATTCAATTCCAGGCGCAGCTATGTTCTACAGGACATGAAAGACCACATGATGGCTCCTTCCTGATCCCCAAGGCCTCTGGGTGTTTGACAGCCTTTTTGAGGGTTCACCAAGCCCTTTGCTGCTTATGGCAAGGTTATGTCTGATCTCAGATCCAAATTGGTGGTGCACAG read_through 258.40 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 MEIS3P1 chr17 15652046 + intron CDRT15P2 chr17 15668422 + 5utr > 33 33 80 103 0.000 0.000 1254 913 1.000 0.870 80 80 42 48 GCCCAGGCTGGAGGGCAGTGGTGCGATCTCAGCTCACTGCAGCCTCTGCCCTCGCTCGCTGCATCCCTCCCTTCTGCAGCTCCTGGTCCATACGCAGACATAGCAGCACTTGCGGCACCGGCTGTCGAGCCAAAGCCAGCATGGGAAGAGCCCCCTCCAGAGAGAGCGCTGGAGGTGGAGGG read_through 216.70 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr4 181146986 - intergenic NA chr4 181070087 - intergenic ? 37 40 283 164 0.000 0.000 1648 2627 0.230 0.030 283 283 157 142 TTCACTGTTTATTAACAATTATAATATTTAGTCTTAGTCCTCTTCACACATTGCAGAAAGAATTTTGGAGTTTTCAAATTTAGCAATGTCAGTGGCAAAACCTCTCAGACTATGTGCTCTTGTCTTTGAGAATTCTGAGAGCTTTTCTTCACAGCTGCAGGCTCTTTTATTATCTCAATGTTCCCTCATTTTTCTACCGGCAAAATAACTTCAGAGTAAAGAAAATAAAAGCATCTTTGCTTCATTTTTTTTTTGCCTCCAGTTTCACCACCTTTCATTTTCAAGTGACACACGGCTATTAGCTGTCCTAATGCTTCATCCAGAATAAAGATCACATGAGAGGAATATCCAGAGGTTATTTTTAATCTCCTTTCTCTAGTTTACATGATCACTTCATTCAAGTCTTGCTGCGGTGCCAGGCGCGGAGGCTGAGGAGAGAGTCGGTG read_through 213.75 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 CLEC12A chr12 10134728 + coding CLEC1B chr12 10147620 + intron > 20 23 259 140 0.000 0.000 1284 767 0.170 1.000 259 259 159 37 CAAATGTAAGCCTTGTCCAAGGAGATGGATTTGGCATAAGGACAGCTGTTATTTCCTAAGTGATGATGTTCAAACATGGCAGGAGAGTAAAATGGCCTGTGCTGCTCAGAATGCCAGCCTGTTGAAGATAAACAACAAAAATGCATTGGAATTTATAAAATCCCAGAGTAGATCATATGACTATTGGCTGGGATTATCTCCTGAAGAAGATTCCACTCGTGGTATGAGAGTGGATAATATAATCAACTCCTCTGCCTGGTAAGTGACCCAGCTGCTGCTTCTATAACCCATAGTAGTGACTTGGACTGAGAGAAGAGGGAATCTCAAGAATAAGAGTTTCCAGTACTCCCTCCTATTCTAAGTGTCCAGTGACTTACATATTTTCTGAGATAACCGAG read_through 205.10 RT 0 CLoss ,,,,,,, NM_001207010,NM_001207010,NM_001300730,NM_001300730,NM_138337,NM_138337,NM_201623,NM_201623 ,,,,,,, ,,,,,,, ,,,,,,, 671,671,641,641,641,641,542,542 ,,,,,,, ,,,,,,, NM_001099431,NM_016509,NM_001099431,NM_016509,NM_001099431,NM_016509,NM_001099431,NM_016509 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001099431,NM_016509;geneB_transcript_strand_disagree=NM_001099431;geneB_transcript_strand_disagree=NM_016509 ,,,,,,, ,,,,,,, MV4_11_RNAseq_1 MAPK6 chr15 52349452 + intron BCL2L10 chr15 52392663 + intergenic > 27 27 118 96 0.000 0.000 809 1056 0.120 0.930 118 118 199 28 CTCTTACTATCCCTCCCCCAGTCCAGTCAGCCATTATGTCTCTCCTGTTAGAAGGACCTTCTCTTTCCTGCTTCAGTATTTGCTGTCTTTAGTTACCACATCGCAGCCAGGGTGGTCACATCCCAGAGAGGTCCGGCGAGCAGAGGGAGCCCGAGGGGGAGTTCAGGGGCCACGGGAAGCCAGAGAGGAGAGGGAGGGCCTGGAGCTTTGTCC read_through 186.50 RT 0 other 0 NM_002748 701 NM_020396 geneB_no_transcripts MV4_11_RNAseq_1 ZNF818P chr19 53708333 + intron VN1R2 chr19 53722150 + intron > 24 24 131 133 0.000 0.000 960 648 1.000 0.400 131 131 73 59 GGAATCTCTCTTTCTGAAATGAGTATTACCTCCATGTTGGGGCAAGGGAAAGAGCCCTGGACTGTGGAGAGTGAAGTGAAAATAACAAAAACATCAAGTGGTTGGGAATGCATCAAAGGTGTGAACACAGGAATAGTTTCTACTCCAGAGGAATCTCCTTTTTCAGATGTGAGCACTCACAGAGACCCAGCATACTCCTGTTTCCCTTACATACAGACTCTGCCTCACATTCTAAAATAGAAAATACTCATCTGATTTCTTCT read_through 160.80 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr4 180980435 + intergenic NA chr4 181069968 + intergenic ? 56 0 142 206 0.000 0.000 2948 0 0.590 0.000 142 142 94 96 GGCGGCCGCTCGGCCCTGCGCCCGGCCGCGGCGGCGGCGGCTCCGCTCGCCCCGGGAGGGAGCCCGCGGCCAGGGCTGGACTCTCGCCCCGCCACCTCCACCGACTCTCTCCTCAGCCTCCGCGCCTGGCACCGCAGCAAGACTTGAATGAAGTGATCATGTAAACTAGAGAAAGGAGATTAAAAATAACCTCTGGATATTCCTCTCATGTGATCTTTATTCTGGATGAAGCATTAGGACAGCTAATAGCCGTGTGTCACTTGAAAATGAAAGGTGGTGAAACTGGAGGCAAAAAAAAAAATGAAGCAAAGATGCTTTTATTTTCTTTACTCTGAAGTTATTTTGCC read_through 147.40 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 LINC00910 chr17 41428826 - intergenic LINC00854 chr17 41401194 - intron > 1 27 101 413 0.000 0.000 49 1424 0.200 0.960 102 102 4 79 CACAGAGTTAGGAGCTGAAGGGCCACAGTGAGAGGTGACCAGAAGACGAGAGTGTGAGCCCTCATTCACGCCCAGAGAAGGGCCGCTGGAGGGCTCCTTGGCCTAGCGGTAATGCCAGTGCCTGGGAAGGCCCTGGTTACTTAGCAGGCCTTGGTCTAGCGGTGGCCCCAGTGCCTGGGAAGGCACCCGTTACTTAGCAGACCCGGAAAGGGAATCTCCCTCTCTCCAGGGGAGACAGAGAACGCTCCGCTCCACCACCTCTTGTGGGAGGTCTGACATTAGCCAGGCCGGCCCGCAGTCATCCGGAGGCTCCAACGTCTGTCTCCCTGTGATGCTGTGCTTCAGTGGTCACGCTCCTTGTTCACTTTCATGTTCAGCCTGTACACCTGGCTCCTCCTTTTAAGTTCTTAGAAGACAGCAGTAGCAGAACTAGTAGGAGTACCACAGTCTTCGATCTTTCTGATAAGTGCATAGAAGAAACGCTGACGTTTGCTGTCCTCCCTCTCCACCTCGG read_through 147.30 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 LIG3 chr17 33307918 - intron CCT6B chr17 33281618 - coding > 14 14 98 119 0.000 0.000 843 506 0.200 0.380 98 98 61 27 TCCACCGGGTCCGGGACGCAGGCGGGAAGTGATCAAGGCTCCCTGAGTCCCACCCGAGCGCTCCCGGTTCAGCGCAGGAGGACGCACGCCGGGCCAGGGGCCTGCACCCTAGAATAATAGCTGAAGGATTTGAAGCTGCAAAGATAAAAGCACTTGAAGTTTTGGAGGAAGTTAAAGTGACAAAGGAGATGAAAAGAAAAATCCTCTTAGATGTAG read_through 134.90 RT 0 NLoss 0,0,0,0,0,0,0,0,0 NM_002311,NM_013975,NM_002311,NM_013975,NM_002311,NM_013975,,, ,,,,,,,, 1,1,1,1,1,1,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, NM_001193529,NM_001193529,NM_001193530,NM_001193530,NM_006584,NM_006584,NM_001193529,NM_001193530,NM_006584 113,113,68,68,113,113,113,68,113 4,4,3,3,4,4,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 337,337,202,202,337,337,337,202,337 1482,1482,1458,1458,1593,1593,1482,1458,1593 32,32,32,32,32,32,,, ,,,,,,,, HRVRDAGGK*SRLPESHPSAPGSAQEDARRARGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDV,HRVRDAGGK*SRLPESHPSAPGSAQEDARRARGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDV,HRVRDAGGK*SRLPESHPSAPGSAQEDARRARGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDV,HRVRDAGGK*SRLPESHPSAPGSAQEDARRARGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDV,HRVRDAGGK*SRLPESHPSAPGSAQEDARRARGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDV,HRVRDAGGK*SRLPESHPSAPGSAQEDARRARGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDV,,, LIG3:NM_002311[1,1]-CCT6B:NM_001193529[4,13];LIG3:NM_013975[1,1]-CCT6B:NM_001193529[4,13];LIG3:NM_002311[1,1]-CCT6B:NM_001193530[3,13];LIG3:NM_013975[1,1]-CCT6B:NM_001193530[3,13];LIG3:NM_002311[1,1]-CCT6B:NM_006584[4,14];LIG3:NM_013975[1,1]-CCT6B:NM_006584[4,14];;; geneB_transcripts=NM_001193529,NM_001193530,NM_006584 ,,,,,,,, 2,2,2,2,2,2,,, MV4_11_RNAseq_1 NA chr4 181070087 + intergenic NA chr4 181157062 + intergenic ? 31 75 164 93 0.000 0.000 12 2655 0.030 0.730 164 164 142 102 CACCGACTCTCTCCTCAGCCTCCGCGCCTGGCACCGCAGCAAGACTTGAATGAAGTGATCATGTAAACTAGAGAAAGGAGATTAAAAATAACCTCTGGATATTCCTCTCATGTGATCTTTATTCTGGATGAAGCATTAGGACAGCTAATAGCCGTGTGTCACTTAAAAATCCAACTTGAGAACTGTCACCAAAGATGTCTAGGAACTTTGAAGAAACATGAAGAGAACCAACTTTGCACCCACAAGAGAGAAAAAG read_through 133.35 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr11 60007626 + intergenic MS4A4A chr11 60059698 + coding > 18 0 148 95 0.000 0.000 622 0 0.160 0.000 148 148 111 130 ATGCAGTGGCTGAACACCATGAAGGAACTGGCACTTGGAGTCCGGACATCTAAAACTTGATAAAGGAAGGTGGCACAAGGAATATTATGTGGAGATTACTTCAGAACACTACAAGCAGTCCCTAATCAAGAGAGGCAAGAGCTAAAGCACCTTTTCTGCTGCCATGACAACCATGCAAGGAATGGAACAGGCCATGCCAGGGGCTGGCCCTGGTGTGCCCCAGCTGGGAAACATGGCTGTCAN read_through 124.40 RT 0 upTSS 3,2,3 ,, ,, ,, ,, ,, ,, ,, NM_001243266,NM_024021,NM_148975 14,-5,14 ,, tuple,tuple,tuple 42,,42 561,663,720 ,, ,, ,, ;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001243266,NM_024021,NM_148975;geneb_utr_codons=6 ,, ,, MV4_11_RNAseq_1 C21orf2 chr21 45761961 + intron TRPM2 chr21 45773662 + coding > 18 18 121 120 0.000 0.000 618 582 0.260 0.170 121 121 26 372 TAATCCCAACTACTTTGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGACTGTGCCATTGCACTCCAGTCTGCGCAACAAGAGCGAGACTCCGTCTGGGGATGGTCTCCAATCTCCGGCGCAGCAACAGCAGCCTCTTCAAGAGCTGGAGGCTACAGTGCCCCTTCGGCAACAATGACAAGGTAGGCTTTCTGCTGGTCAGCCTGCAGTTGGCA read_through 120.00 RT 0 NLoss 3 NM_003307 27 tuple geneB_CDS_mapping_exception=NM_003307:-2;geneA_no_transcript_IDs_found geneB_transcripts=NM_003307 MV4_11_RNAseq_1 TRIP6,MIR6875 chr7 100435201 + intron SLC12A9 chr7 100449598 + intron > 17 17 129 114 0.000 0.000 484 716 0.040 0.210 129 129 35 34 CGTTGGTTGCCCTCTCTCTGAAGCCATCATAGTCGCCGCCATCTTTCCTTCCCGGCCGTCAGTCACGTGGGCAGCACGCCCCAGGCCTCCGACTGCTGGCGTGCAGTGGGGCGGATTCCGGAGGATTCAGCCTTAGGAGGGAGGTTCGAGTTTATGCCCATTTTACATATGAGGACGCGTTGGCAGGTGGTACTGCTGTTCATGGGATCTGTAAAGAGTGAAGAAGGAGTCTCAGCTCTCAG read_through 120.00 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 GSDMC chr8 130735223 - intergenic NA chr8 130719428 - intergenic > 16 16 97 136 0.000 0.000 784 416 0.310 0.310 97 97 51 51 ACAAAAAAACTGCTAGATGCTGAGCCCGGATGGCCACCTAGCAGTGCAGAGGTGGTGCTTACACTGAAATGGGAATGGCACAGAAAAATAGAATGTGGCTGAGAATATGGCAGAGCTTGTTTTGGTTCTTTCCATCTGATCACTTCATCCTTCCAGGCACTGGGCATCCAGAGTTAAATAGATGCAACCCCTGCTGTGGAGAAGCTTACAGTGCCGTGAGAGGAAGTGACAG read_through 120.00 RT 0 other 0 NM_031415 geneB_no_transcripts MV4_11_RNAseq_1 GSDMC chr8 130735436 - intergenic NA chr8 130719428 - intergenic > 26 0 145 100 0.000 0.000 1166 0 0.510 0.000 145 145 50 51 CGGGAGGCAGAGGTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCTTGGGCGACAGAGAGAGACTCCATCTCAAAAAACAAAAACAGAAACAAAAAAACTGCTAGATGCTGAGCCCGGATGGCCACCTAGCAGTGCAGAGGGCTGAGAATATGGCAGAGCTTGTTTTGGTTCTTTCCATCTGATCACTTCATCCTTCCAGGCACTGGGCATCCAGAGTTAAATAGATGCAACCCCTGCTG read_through 116.60 RT 0 other 0 NM_031415 geneB_no_transcripts MV4_11_RNAseq_1 NA chr5 49911816 + intergenic PARP8 chr5 49949858 + intron > 19 11 338 89 0.000 0.000 651 495 0.410 0.710 339 339 179 137 GTAGCCTTGTAGTATAGTTTGAAGTCAGGTAACATGATGCCTCCAGCTTTGTTCTTTTTGCTTAGGATTGACTTGGCAGTGCAGGCTCTTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCTAATTCTGTGAAGAAAGTCATTGGTAGCTTCATGGGGATGGCATTGAATCTATAAATTACCTTGGGCAGTATGGCCATTTTCATGATATTGATTCTTCCTATCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCTCTTTCATTTCCTTGAGCAGTGGTTTGTATTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCAGTTCTGCAGGCTGCACAAGAAGCATGGCCCAAGCATCTGCTTCTGGTGAAAGCCTCACGTGCTGCTGCATTCATGGTGGAAGGTGAAG read_through 114.60 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 MBD1 chr18 47836571 - intron CXXC1 chr18 47823513 - intron > 21 22 59 142 0.000 0.000 1071 517 0.180 0.140 59 59 34 29 GTAAGAAATGCCTTTTGCCTCCCACCATGATTCTGAGGCCCCCCAAGCTGTGTGGAAATGGTCTTGCTCTTGCCTGGGGCTGGAGTGCAGGGTGAAGTCACACCTCATTGCAGCCTCAACCTCCCAGACTCAAGCAATCCTCCCACCTCAGCAGGCATATATAAATGGAATCATCGAAATTTAAAATTTGCACTTCAAAG read_through 107.12 RT 1 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr6 159542282 - intergenic NA chr6 159526336 - intergenic ? 14 18 200 363 0.000 0.000 652 1475 0.170 0.240 200 200 81 74 GTCTTCTGCTTGGAATAGCCCTTCTCAGGGCACCTCTGTCTGGAATGGCCCACGTGTGTTCTGCCTGCTCCGGTCCACTGTGATCCTGAGACTCTAAGCTCAGCTCCTGGCCCTCTTGGAGTGGCACCACCATGCCTGGTCCCCAGCCTCCCAGAGCACCCAAGGGGGAAAGCTGTGGTGTCCCTGCTACAAAGCACAGGCTCAGGAACCTGGCTCAGAGCTGCTCCTCAGTGCCAGCTGCTGGACTGGACAAGATTTTAGGCAAGGCACGGCCACACACCAGGAAGAGCCTGGCATCCGCAGTGACCCTCGAGCAGCTGTCCCTGCAGCTGGGCCTGCCCCTCAAGCACGCTGAGCCTGTCCTTCACAGCCCCATGGTGCTGACCCAGGGCCCTGAGACCACCAGGAGGCACCTCTTCCTCTTCAGGGACTGGCTGGTCATTGCCAAGCAGAGGTCTTCCAAGAGCTACAGAGTCGAACAGAAGCTGCATCTATCTGGCGTGCAGGCTGTCACCTGTGACAGAGAGGAAAGGCAGGATGGGGACAAAGACCAGGATCTCAC read_through 106.35 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 CD300C chr17 72539210 - intron CD300LB chr17 72528780 - intron > 9 9 122 112 0.000 0.000 484 566 0.120 1.000 122 122 154 73 CCTGGCTCTGCAGTACCTAGGGATGGGACAAGGAGAGGCCCAGGACCCTGGTCAGGCCTGGGTGTGGCCGTGGGGCATGATGGATGCAGGGCATCTGTCCAGCACATCATTGGTGACCTTGTCACTCCGATGAGTGTCGTACCTTGGATTCCCGGCCAATGCAACAAAATGGTATGGCTCTGATGACTGGAGGAACACTAGGGTCCTTGGTCTCCCACTGGTTTGAATAAAAC read_through 105.00 RT 0 other NM_006678 401 geneB_no_transcripts MV4_11_RNAseq_1 NA chr7 30283589 + intergenic ZNRF2 chr7 30293728 + intron > 8 8 200 117 0.000 0.000 510 540 0.060 0.070 200 200 70 48 CTTATCCTTTAATAAAGATTGTGTTCTTTATTAAAGTAAAGTACTGGAGAACTCTGAGTTATATAGTCAGCCCCTCATGCCTACAGACTCCATTTGTAACAGTTTTGAACTGGGGCTGGCTTCAATTTGTATCTCCAACTTGAGCAGTCCTTCACATTCCTGCATGCAAACAGCAGACTCAGCAACACAGATTTAGTGGCTTTGGCAGAACAAAGACCAGAATCCAATTTTTGTCAATCAAGTCACTTTTCCCCTCTGGGCCTCAGTTTCCTCCTCTGTAGTTGAATGTACCTCTTCCTCCACTTCACTCTTCCCA read_through 105.00 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr8 130365226 + intergenic NA chr8 130400291 + intergenic ? 17 18 314 201 0.000 0.000 834 1123 0.100 0.140 314 314 178 128 CTCTCTTCTCTCCTCTTGTTTTAACATATTGTCTATCATTTCCAGTGAACCTGCATTTTGGTTCTCTTTGTGTGTAATATTTTGCATGTTTAGTTTTTCACGCAATGCCTCCTCCTCCTTCATTTTCACCACTAACCTTTGATACTTATTTATTGGAACATTTTGTGTTCTCTGCCTGGCATGAACACAAAACATGAGCCTGCGGGAGAGCAGCCTGAAAAATGGAGCCTCCTTTTCTTCTCTGTCTCTGCTCGATCTTTCCCAGTGTGGCAGGTAGACCGCTGTGGGCAACAGGCCAGGCTGCAGGCACAATCTCTGAGGAGACATGGAAGACAACAGGAATGGGATGTAGGACATACAGTCACATTTATTTCATTTATTAAAGATCTTCCGAAGCTCCCCTTCAGTCCTGGACTGAGTTCAATGCACACATCTTGCACAGAATAGATGTTCATATATTCTTGGTTTAAGTGCCTATCAACCTTCATATAATTCCACTGGGTCTACGTGATAG read_through 97.85 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 PTPLA chr10 17595801 - intergenic NA chr10 17585788 - intergenic > 13 13 126 78 0.000 0.000 358 542 0.720 0.720 126 126 17 17 CTGGGATTGGCCAAGACTCAGCTGTTGTTACAGAGCTACAGTCTTGTCATGTTGCCCAGGCTGGTCTTGAACTCCTGACTTTGTGCAGTCCTCCCACCTCAGTCTCTTCAAGTGCTGGGATTACAGGAGCACAAGTATGATGGCAAGCCACATGGATTAGAGGAACAACCTAGAAATGGATAAGTGACATGACTGAAGGAGCC read_through 90.00 RT 0 other 0 NM_014241 geneB_no_transcripts MV4_11_RNAseq_1 NKAPP1 chrX 119374080 - 3utr RHOXF2,RHOXF2B chrX 119314087 - intergenic > 10 10 110 127 0.000 0.000 593 307 0.040 0.670 110 110 411 14 TTCAAGTGAAAGGTCCAAGAAAGGAAGAAAGAAAAATTTATCAAAAAGAAAACACAAGAAGTATTCTGAAGATAGCGACAGTGACTCTGATTCTGAAACAGACTCCAGTGGGGAAAGAATGGTGAGAAGGAGCAGAGTGAGATGAATGAAATTTGATCTCTGTCGTTGGCTGTGGTTGCTACTCTTGGACAGTAACTCGATGACCATGAAGAAGACTTCCTCATTTCATCACATCC read_through 90.00 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NEUROG3 chr10 71332823 + intron C10orf35 chr10 71391236 + 5utr > 6 6 90 127 0.000 0.000 517 377 0.130 0.350 90 90 379 12 GGGAAGGACCGCTCCGTCTCACGGGTCACTTGGACAGTGGGCGCACCCGAGGGTTGAGGCGTCATCCTACGGCGGGGTCAGAGGGAAGGACACAGCATCTACTCAGCGTGGGTCACCTCTGTGAACATCACTGACTGCAAGCCTCCCTCAATTTCTGGTGCAGCCCATCAGGGACCCACAGCGCCTGGGAGGATGGTGCGGATCTTGGCCAATGGG read_through 89.40 RT 0 other 0,0 NM_020999, , 1, , , , , NM_145306,NM_145306 -34,-34 2, tuple,tuple , 366,366 32, , GKDRSVSRVTWTVGAPEG*GVILRRGQREGHSIYSAWVTSVNITDCKPPSISGAAHQGPTAPGRMVRILANG, NEUROG3:NM_020999[1,1]-C10orf35:NM_145306[2,4]; geneB_transcripts=NM_145306;geneb_utr_codons=13 , 0, MV4_11_RNAseq_1 UBA2 chr19 34957919 + coding WTIP chr19 34981281 + coding > 11 11 119 58 0.000 0.000 176 424 0.010 1.000 119 119 2721 12 GTTGAATTTGAAGTTGTTGGTGATGCCCCGGAAAAAGTGGGGCCCAAACAAGCTGAAGATGCTGCCAAAAGCATAACCAATGGCAGTGATGATGGAGCTCAGCCCTCCACCTCCACAGGCATTTGCATCAAGTGTGGGCTTGGCATCTACGGAGCCCAGCAGGCGTGCCAGGCAAT read_through 84.81 RT 0 Fusion 1 NM_005499 581 16 perfect 1741 38 116 NM_001080436 223 2 tuple 668 1293 39 117 VEFEVVGDAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTGICIKCGLGIYGAQQACQA UBA2:NM_005499[1,16]-WTIP:NM_001080436[2,8] geneB_transcripts=NM_001080436 0 MV4_11_RNAseq_1 SLC7A5P1 chr16 29624424 - 3utr SMG1P2 chr16 29580650 - intron > 8 7 178 133 0.000 0.000 398 438 0.020 0.030 178 178 395 398 CTGGACGTCTACGGCTCGCTGCCCGCCTTCCTCAAGCTCTGGATCGAGCTGCTCGTCATCCGGCCTTCATCGCAGTACATCGTGGCCCTGGTCTTCGCCACCTACCTGCTCAAGCCGCTCTTCCCCAGCTGCCCGGTGCCCGAGGAGGCAGCCAAGCTCATGGCCTGCCACTGCGTGCATTGACTTGATGCAAAACATCACAAAGGCTCGATGTTATACAGTATGCGATTTTTGAGAACTGATAGTGCATCAGCTGACCCAGGTAATTTAAAATATTCTTCATCCAGAGATAGAGGTGGTTCTTCCTCTT read_through 83.60 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr4 115380535 + intergenic NA chr4 115412008 + intergenic ? 22 23 123 144 0.000 0.000 434 1073 0.920 0.720 123 123 23 31 CTCTACCATCCCCACCACATCTACCTGTCTACCTGTGTGTGTTCCTAAACTCCAGCTTCTCTCATGAAAGAACTCTCCATGCATCTGGCTTAAGGTCATCCCATCCCTGATCTCCACTTAAGGTTCATGGCTGGAGGGAGCTTGCCTTGAGACTCAAATGAAATTTTGAACTTTAAACGATCGAGTTGTTGCTGAAACAGGTAAGACTTTGCAGCTATAGGGTGATTGTATTTCGTACTTGAAAAAGACATGAGTTTGAGGGGCCA read_through 75.35 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr10 109449404 + intergenic NA chr10 109460121 + intergenic ? 11 11 99 120 0.000 0.000 936 564 0.920 0.920 99 99 11 11 CAACTTTGCCTTTTCAGAAACTTCTAGCTGCCTTCTTGTGCCTCTCTCCCACTCTCCTGGAGTTCTCCCAGAACAATATGCTGAGAACATTGATAAGGTTGGAATTGCCCAAAGGCCTTGCACCAGGAGCAAATACTTTGCTCCTAAAGCAGACATTCAGATCTGGAAAATCTGAAAGAGAACATGGGCATGATTTCCTTCATTTTAAAAATCATCTT read_through 75.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr5 142987873 + intergenic MIR5197 chr5 143020872 + intron > 5 5 113 84 0.000 0.000 310 440 0.220 0.230 113 113 22 21 GGAGTTTCCCTGCACGAGCGCTCTCATTTTGCCTACTGCCATCCGTGTAAGACGTGACTTGCTTCTTTTGCTTTCTGCCATGACTGTGAGGCTTCCCTAGCCACGTGGAACTGACTAGCCCCAGTGCCTTATTCAAAAAAAAGAAAAATGAATGCATAAGAAGAAAAAAGAAAAACTCATTTATTGAAGAGAGACA read_through 75.00 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr4 180974098 + intergenic NA chr4 181069968 + intergenic ? 22 22 98 103 0.000 0.000 759 709 0.790 0.230 98 98 27 96 AGGACGCAGTAAAAAGGCGCTGTCTAGGAGGAACAGGCCCTCCCTGGACACTGAATCTGCTGCTGTATTGATCTTGGACTTCTTAGCCTCTAGAATGACTTGAATGAAGTGATCATGTAAACTAGAGAAAGGAGATTAAAAATAACCTCTGGATATTCCTCTCATGTGATCTTTATTCTGGATGAAGCATTAGGACAGCT read_through 73.40 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chrX 36982438 + intergenic FAM47C chrX 37003596 + intron > 0 19 115 124 0.000 0.000 0 708 0.000 0.730 115 115 32 25 GTTATTTTCAAAAGCTTGTCTTGCTTCTTTGAATGTGCAGACGACTTCTGTGTACTCGCCCTCAATCTTGGCTAGCATTTTAATACTGAATTGGCTTTTTTCCTGTGAAGAAAACTCCTGGACGAGTTTCTGCTTGAGCACCAGCGCGGCACACAGGTAACCCGCGCGGCCCACAGACAGCTCGTCGGAGCCGCACTCCAGGAAGGAGACCGGCGCGCAGACGGCACACAGAGCCCGG read_through 70.80 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 C20orf197 chr20 58631063 + 5utr MIR646HG chr20 58696084 + intron > 6 6 109 81 0.000 0.000 326 354 0.040 0.120 109 109 455 33 GCAGGAAACAGTGGTTTCCTGTTCATATCCTGCCTGAGCCTGGGCCGGGTGGAGGTGTCCTGCATGGAGTCTTGTGAAATCGCGTGGACTGCAACACCCAGCAGCGCGGGAGAAGTGAAATTCTACCTCACTTTTTTAAAAGAAGAGCCTGGAATTGGCCTATCCGTCTTTTTCCCCGTTGGATCACAG read_through 68.00 RT 0 other NM_173644 geneB_no_transcripts MV4_11_RNAseq_1 NA chr5 49910003 + intergenic PARP8 chr5 49935089 + intron > 9 1 119 211 0.000 0.000 658 16 0.130 0.110 154 154 135 240 TGGATCCATTCCTATTCAGCCAAGCAAGACTCCATCTGTAGTCCCAGCCACTGGGAGACTTGAGTCCAGGAGTTCAAGACTGTAGTATGCAATGATCAAGCCTGTGAATAGCCACTGCACTCCAGAGTGGACAACATAGCAAGATTCCCATCTCTGGTTTTAAGGAATGAATGGCCATGTCAACTATTGGAAGCATCTTTGAATTGGAGCCTCTATGTTCAGGTTTCACCAGGTTTATGTTTTTAATTAATATCCTATTCAGCTTTCTGTAATTTCCACTGAGGTTTTAGTTCTGCAGGCTGCACAAGAAGCATGGCCCAAGCATCTGCTTCTGGTGAAAGCCTCACGTGCTGCTGCATTCATG read_through 67.40 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr6 14460640 - intergenic NA chr6 14448859 - intergenic ? 17 17 114 276 0.000 0.000 572 776 0.490 0.460 125 125 34 36 CTGGAAGTGGTGGCTGCACAGGGAGCATGGCTGGGAGGCCTCAGGAAACTGACAATCATCAGTAGAAGATGAAGAGGAAGGAGGCGCATCTTACATGGCCAGAGAAGGAGGAAGAATAAGAAGGGATTCTCCAGCTGGAGCCCTATAAATTGGACTGACAAAAGACAGATTAGCAAGAGAAATGCAAGCAGCAGTTTATTAACATGTGCATCATGATTACACATGGAAGTACCCAGAGCAGGTCATAAGACCTCATGTGACAAGTGCCCTCCTTACTCCCAGAGAAAAGGAAGGAAGACACAGAAACACCACGAAGAATATGGACAAACAGACCTTGCTAAGTTCCCCCCCATTTATTACCATGACATCATACTCCCTTTGTCCAATCACACTTTCATCATACTCCC read_through 67.40 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 LINC00662 chr19 28283908 - 3utr NA chr19 28223875 - intergenic > 1 11 95 265 0.000 0.000 8 642 0.070 0.070 95 95 224 166 GGCGGACGCAGCAGGACAGAATCTCCGTGGACATCTGTCTGGAGGAGCAATTTTACTGCGACATTTTAAAGAAACAAATTTAATTGATTTCCAAGGCTGGAAACACTCTTTTTGTAGAACATACAAATGGACATTTCTAAGCACATTGAGGCCTATAATGAAAAATCAAATATCCCACAATGAAAACTAGAGGGAAGCTATCTGTGATAATGCTTTGTGGTGTATGGATTCATCTCACTGACTGAAACCTGAGTTTTGATTCACCAGGTTGGAAACTCTTTCTGCAGAATCTGCAAAGAAATATTTCTGAGCCCATTGAGGCCTACAGTGGAAAACTGAATATTCTGTGATAAAACTAG read_through 65.00 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr8 58405427 - intergenic NA chr8 58375636 - intergenic ? 27 27 108 113 0.000 0.000 676 612 0.930 0.770 114 114 28 34 CTTTCTCTGTGAATGAAGCTGAGCTATCAGACCAGCAATGTGTAAAACATTGAACCTCTCATCCTCCTGTTCCTTTTCTCAGGAATCTACCAGGGCATATGCTCTCTCACTGACCAAGTTTCAGATGTCCGGACTCCAAATACCAGTTCCTTCCCGGTGTTCAGCCACCGTGTTGAGACTCCATGGGGGCCTTCCACACACTGCTCTGGTGAGGCATCCCACTGGG read_through 64.40 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr5 164556820 - intergenic NA chr5 164499076 - intergenic ? 12 12 296 124 0.000 0.000 602 647 0.350 0.710 296 296 33 16 CCGGGAAAGGCAAAAACCACAATAGTTTTAGGTGCATGAAAGCAGACAGAAATTGTGCTATACTTTGTGGTCATAAAAAACAGCAGAAAGATTTACAGTGGTGACCAGTAGCGGCTTGGTATGGCAACAGTAGAAATGGACGGTATTAAAGCATGTCCAGACAAAGCTTCCAAGAGGATTCCTGTGCCTCCAGCAGGGTATACTTGGGCATTCAGAAGTTCCCCGGCTTCCCTAAGAGGAGCTTGGCAGCCGCTGAGGAAGAGCCTGTAGTCCTGGAGAGGCTCCACGATCAGTAATCTAAAATTGATCACGTAGTAGGAAGTAAAATGCTCCTCAGCAAATGCAAAAAAACTGAAATCATAAAAAATCATCTCTCAGATCACAGCACAATCAAATTAGAACTCAAGAATAAGAAACTG read_through 62.45 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 TIFAB chr5 134787899 - 5utr C5orf20 chr5 134780202 - 3utr > 12 7 234 274 0.000 0.000 156 465 0.050 0.060 234 234 467 708 CCACGCTGGGGTTTCTCAAACTCTCAGCAGTGGAATTGCACTTCTGCAATGAAAAATTACACTTCTATTTTCTTTCCTAAAGGGAAAAAGGAAGAATGCAACAAAACTGAAGTATGTTCTGCCACGTTCCTGAACTGCAGCCATAGGAGCCCTCCCAGCCCTACCCAAACCAGCCTACTCCCTCTCAAGAGCTCACAGCTGCAGGACTAGAGCCAGATGTGCCCCGGCAATAAGCATCCACCCCGTGACACGTAGTGGTGGCTGATGTCGCCACAGTACCATGAGGTTAACAGGTCCTCCCTCCAGCTTCCCTCATGGTGGCAGCCTAACCTGCATTGCAGCCGTTCACCGGACACCGCACCAGACCCTCAAAACCCATCCAAGACTGTGGGAGGAGTAAACAACCCAGCCCAGTTAAGAGGAGATGCCGAATTTAATGAACCCTATTTGAATTGCAGGGCTGTGATTCCTCTTACCTTTAACGTGAACTCACAGGCGGATTAAAGTAAACAACCCAGCCCAGTTAAGAGGAGATGCCGAATTTAAT read_through 62.10 RT 0 other NM_001099221 NM_130848 735 geneB_no_inframe_contig_found geneB_transcripts=NM_130848;geneb_utr_codons=13 MV4_11_RNAseq_1 EFCAB14 chr1 47144141 - coding ATPAF1 chr1 47131036 - coding > 6 5 143 86 0.000 0.000 177 130 0.100 0.020 143 143 68 287 TGGCCAGGACGTGGATGGGAAGCTGACCTACCAGGAAATCTGGACCTCCCTAGGTTCTGCTATGCCAGAACCAGAGAGCTTGAGAGCATTTGATTCCGATGGAGATGGAAGATACTCATTCCTGGAGCTAAGGGTAGCTTTAGGTCAGACCCAGCTGCTTTTGAGTCCCGCCTGGAGAAACGCAGTGAATTTCGGAAGCAGCCAGTGGGGCATTCCAGGCAAGGTGAT read_through 61.40 RT 0 Fusion 0,0,1,0 NM_014774,NM_014774,NM_014774,NM_014774 ,,495, 11,11,11,11 ,,tuple, 1480,1480,1480,1480 ,,47, ,,144, NM_001042546,NM_001243728,NM_001256418,NM_022745 112,1,-92,112 2,2,2,2 tuple,blat,tuple,tuple 336,3,,336 852,723,534,1056 47,48,50,47 ,,151, WPGRGWEADLPGNLDLPRFCYARTRELESI*FRWRWKILIPGAKGSFRSDPAAFESRLEKRSEFRKQPVGHSRQGD,WPGRGWEADLPGNLDLPRFCYARTRELESI*FRWRWKILIPGAKGSFRSDPAAFESRLEKRSEFRKQPVGHSRQGD,GQDVDGKLTYQEIWTSLGSAMPEPESLRAFDSDGDGRYSFLELRVALGQTQLLLSPAWRNAVNFGSSQWGIPGKV,WPGRGWEADLPGNLDLPRFCYARTRELESI*FRWRWKILIPGAKGSFRSDPAAFESRLEKRSEFRKQPVGHSRQGD EFCAB14:NM_014774[1,11]-ATPAF1:NM_001042546[2,7];EFCAB14:NM_014774[1,11]-ATPAF1:NM_001243728[2,9];EFCAB14:NM_014774[1,11]-ATPAF1:NM_001256418[2,10];EFCAB14:NM_014774[1,11]-ATPAF1:NM_022745[2,9] geneB_transcripts=NM_001042546,NM_001243728,NM_001256418,NM_022745;geneb_utr_codons=13 ,,QT, 0,0,1,0 MV4_11_RNAseq_1 NA chr9 32282503 + intergenic ACO1 chr9 32351830 + intron > 12 12 61 122 0.000 0.000 612 288 0.920 0.230 61 61 12 23 TGGCCAGCCAGATTTGACTTTATCTTTTCTTTGGGAGTGCCACTTCATCAGATGGGTCTCCTTGAACTCTCAGTCCTTCTCATATGGAATGTCTGGCCTGAAGAAACAATTGAAGAGGACTTGAAAGCAGGGAGGTTCACAAATAGCAAGAAATAATAAGGATCTTGATGAAGACTATGAAG read_through 61.23 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr10 31394868 - intergenic ZNF438 chr10 31322339 - intron > 5 5 83 123 0.000 0.000 382 218 0.830 0.030 83 83 5 5 AGTCCTCCAAACCCGGACCCCTCAAAGCACCTCATGATCAATAGTGGTGGGGTCGGGGGTGGGCGGTGAGAAATCAACTGCTCAACTGGAGCTGCCTTGCAAAATCCCTGCCCTGGCCATCTGCCGTGGTTCCAAATAAGTTTGTAAAAGTGAATCTTGCCATTTTCAATACTTCCTCCTTTGGGTCTATTTATTCCGAAGTCTG read_through 60.00 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 BUB3 chr10 124922344 + coding NA chr10 124988633 + intergenic > 9 10 195 129 0.000 0.000 422 178 0.010 0.670 195 195 2914 14 ATTTGGGATCCATTTAACAAAAAGCGACTGTGCCAATTCCATCGGTACCCCACGAGCATCGCATCACTTGCCTTCAGTAATGATGGGACTACGCTTGCAATAGCGTCATCATATATGTATGAAATGGATGACACAGAACATCCTGAAGATGGTATCTTCATTCGCCAAGTGACAGATGCAGAAACAAAACCCAATTCCCCTGGGAATCTGTCTGTGACTACGGAGACCTCACACCATGAGAAGGGACTATACCCCCTTGGCCCATGCACCTGTTAGGCTCCCTCACCTGACCATTAGAGAGCACCTTGACAGAGAGCTGTTAG read_through 60.00 RT 0 CLoss , NM_001007793,NM_004725 , , , 971,971 , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 PPP2R2D chr10 133761295 + coding BNIP3 chr10 133809746 + intron > 5 5 99 120 0.000 0.000 340 260 0.090 0.050 99 99 234 6 CACCAGGTCCACGAGTACCTGCGCAGCAAGCTCTGCTCTCTCTATGAGAACGACTGCATCTTTGACAAGTTTGAGTGTTGCTGGAACGGTTCGGATAGAGACAGGGTCCCACCATTTTGCCCAGGCTGGTCTCAAACTCCTGAGCCAAGTGATCCACCTGCCTCAGCCTCCCAAAGCACTGGGATGACAGGCGTGAGCCACCATACCCGGCCCCAGCA read_through 60.00 RT 0 CLoss , NM_001291310,NM_018461 , , , 587, , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 RNF144A chr2 7170346 + coding LOC101929452 chr2 7215725 + intron > 8 8 90 125 0.000 0.000 372 228 0.250 0.540 90 90 20 8 ATGATTTCCTTCTGATACACTACGATAAGGGACCCTGCCGGAACAAGCTGGGCCACTCCCGGGCATCTGTGATCTGGCATCGGACACAGTGATTTGATGCCTCCTGCCGTGTCATGACAAAGCAGAAAGGTTCTCACCAGATGCAGCCACCTGATCTTGGACTTTTCAGCCTCCAGAACTGTGAGTAAAATTACCTCTATTTTTTATAAATTAC read_through 60.00 RT 0 CLoss NM_014746 747 geneB_no_transcripts MV4_11_RNAseq_1 NDUFA10 chr2 240929491 - coding MIR4786 chr2 240890435 - intron > 10 10 146 99 0.000 0.000 301 299 0.060 0.910 147 147 963 10 NAGCAGGACAATCGCACTTTATACCACCTGCGATTACTGGTTCAGGATAAGTTTGAGGTGCTGAATTACACAAGCATTCCTATCTTTCTCCCGGAAGTCACCATTGGAGCTCATCAGACTGACCGTGTCTTACATCAGTTCAGAGAGGCTCAGCAACTACCTGACAAAGGAACGAGGGGCTGAAGCGGAACGTACTGGAAGCCCTGGCCAGCAGGTGGCCAGTGGGACGCTGACTTGAAGCCTCT read_through 60.00 RT 0 CLoss NM_004544 999 geneB_no_transcripts MV4_11_RNAseq_1 KIT chr4 55619579 + intergenic NA chr4 55697968 + intergenic > 9 9 120 125 0.000 0.000 312 288 0.820 0.120 120 120 10 77 GGTCCCTTGAAACCAGGCATTTCTGTTGCTCCTGTACCAGCTGGGGAGCCAGGTCTTTGGTGCCAGATATACATTGATAAATGAGGCATAGACAGCATCCTTAAGAAGCAGATGGGCTCCTGGTCCAGGAGTCAGTGACACTGAAGGAAGATCCAGGAGAAAAGGGGAATAATTGAGGCCCAGCTCTGCTTTATTCCAAGGTGAGTTTGCAGATCAGCAACGAAGTGTGTGAGCTACAAAATGG read_through 60.00 RT 0 other 0,0 NM_001093772,NM_000222 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 NA chr8 115031770 - intergenic NA chr8 115010285 - intergenic ? 9 9 147 200 0.000 0.000 354 846 0.560 0.600 147 147 15 14 AAAGGCACTAGAGGATTTACGTCTGTGAGAGGAAGGAAATAAAGAATTCCCCTGCACACGTTCTCTTGCCTGACACCATGTAAGACATTCACTGCTTCTCCTTTGCCTTCCATCATGATTGTGAGACCTCCCCAGACATGTGGAACTAAACTCTCAATCTGGGATGTACTAATTCCTCACATTTGCTTCAAGAGCTTCTCCACTTATGTGCTGTGGATATCCCTGGGCAAGTCACGTACATCTTCTATGCTCCTGTTTGCTCATTTTAAGGATAGAAATAATAACAGTACCATATAAGGTTGCTGCATCATTAAATGAAATTTTTTTATAAACACATGTGTTTAAA read_through 60.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 CSF2RA chrX 1424420 + coding IL3RA chrX 1441358 + intron > 13 13 43 120 0.000 0.000 578 180 0.160 0.060 43 43 168 20 ATCAAAGACAAACTGAATGATAACCATGAGGTGGAAGACGAGGTAGCTCTCCAGAGAAAGACCCTGTAAGTATCTTTTTCTTTCTCAATGACATCCTGTGATTGGGCCATGAGTCACCTCCAAGTTCAGTGCTCATTTCATGGAACTGTTTAGCTGTGGGGC read_through 57.80 RT 0 CLoss ,,,,,,,, NM_001161529,NM_001161530,NM_001161531,NM_001161532,NM_006140,NM_172245,NM_172246,NM_172247,NM_172249 ,,,,,,,, ,,,,,,,, ,,,,,,,, 1125,1227,1125,726,1125,1125,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ;;;;;;;; geneB_no_transcripts ,,,,,,,, ,,,,,,,, MV4_11_RNAseq_1 TAF1D chr11 93469307 - 3utr SNORA18 chr11 93467827 - intron > 3 18 251 379 0.000 0.000 137 426 0.010 0.060 251 251 983 799 GGATCCATTTCTCCTATTGAGGAGTCAACAGCAGAGGATGAGGATGCAACACATCTTGAAGATAACGAATGTGATATCAAATTGGCAGGGGATAGTTTCATAGTAAGTTCTGAATTCCCTGTAAGACTGAGTGTATACTTAGAAGAAGAGGATATTACTGAAGAAGCTGCTTTGTCTAAAAAGAGAGCTACAAAAGCCAAAAATACTGGACAGAGAGGCCTGAAAATGTGACAGGATCATGAATGTCAAAGGCTTTTATCTTGAGAACATGGTGTCTGGAGTTAAAGGTATTGGCATACTCCACACATCTGTACCATTCTTGAGTGATCGCTTAGGAATGAATGTGATTTGAACTCATTCATGTTGAGAGGGTGTCAAATTGAGAACCAGGTAGATCCCCACCACCTACAGTAAAAAGGACCCTAAAGTAAATTGGTTGAAGAAATTAGATCCCAAAGATTCTTGGTGAATTTTGAAGTCTTCATCAGTATATCCATATTAAAACGAGATGACAGAAGCCAAAGTAATTATGGGCTGACAGGACAACTGGATCAGTTTCATTAAAAAGGGCGAACTTGAAGATAAATCTTTTGACTCCAGCTCTTTAGAGGATCTAAAGTGACCTTGAT read_through 56.30 RT 1 other NM_024116 geneB_no_transcripts MV4_11_RNAseq_1 NA chr4 55697968 - intergenic NA chr4 55684876 - intergenic ? 0 26 138 124 0.000 0.000 0 1048 0.000 0.350 138 138 77 73 AAGAAAGCAAAAGCCATTTTGTAGCTCACACACTTCGTTGCTGATCTGCAAACTCACCTTGGAATAAAGCAGAGCTGGGCCTCAATTATTCCCCTTTTCTCCTGGATCTTCCTTCAGTGTCACTGACTCCTGGACCAGATTTGCTGCTCAGTCATAATAGGATGTCAGCGGCCTTCAGTGCCTACATCTTCCCGCATCCCATGAACTCACGTGGGAAATACCTGGAGCCCAGATCTTCCTGAGAGAGCTGCGGAAAAACCT read_through 52.40 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 TSG101 chr11 18502071 - 3utr LDHAL6A chr11 18490766 - intron > 3 4 265 146 0.000 0.000 195 293 0.010 0.200 265 265 911 23 AAACAATGATATCGATGAAGTTATCATTCCCACAGCTCCCTTATACAAACAGATCCTGAATCTGTATGCAGAAGAAAACGCTATTGAAGACACTATCTTTTACTTGGGAGAAGCCTTGAGAAGGGGCGTGATAGACCTGGATGTCTTCCTGAAGCATGTACGTCTTCTGTCCCGTAAACAGTTCCAGCTGAGGGCACTAATGCAAAAAGCAAGAAAGACTGCCGGTCTCAGTGACCTCTACTGACTTCTCTGATACCAGCTGGAGACTTCAGTGCCCTGAACGGTTAGAGAAATTAATGAAGGAGCTCCACCAGGTGCCTTCACAACTCTGAGTCATATCAGAATCTCTCCACAGCTCTCCTTTCAAAAATGACACCGTGACATTTCAGGATGTGAAAAAACTTACTGGA read_through 48.80 RT 0 other , NM_006292,NM_006292 , , , , , , NM_001144071,NM_144972 , , , , , , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001144071,NM_144972;geneB_transcript_strand_disagree=NM_001144071;geneB_transcript_strand_disagree=NM_144972 , , MV4_11_RNAseq_1 MS4A4A chr11 60073674 + coding MS4A6E chr11 60085338 + intron > 7 7 43 129 0.000 0.000 470 130 0.070 1.000 43 43 383 24 TCTGCCTTTGGATGTAAAGTGCTCTGTTGTACCCCTGGTGGGGGGAAAATAAAACATTATGCCAGCATTCAAGTTTTCATTTCAAGAGAAAGAAAGAAAGAAAGAAGAAAAGAAAGAAAGGAGAAAGAAAGAAAGAGAAAGAAAGAGAAGAGAAGAGAAGGAAAGAAAGAA read_through 47.00 RT 0 CLoss ,, NM_001243266,NM_024021,NM_148975 ,, ,, ,, 489,591,648 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 NA chr2 140169141 + intergenic NA chr2 140201097 + intergenic ? 8 9 247 141 0.000 0.000 434 476 0.240 0.330 247 247 32 26 CTTGAAGTCAGTGAGACCAAGAACCCACCAATTCCGGACACATAACCACTATGCTAGACCAGATACAGGAAATCTTCATAACCTCAGGAAGTTCTCCTGTGCCTCTTTGCAGTCACTTCCTCTCCGTGTCTTCCTCCCACCCCCGCCATCTGAGGCAACCACAACTGGAATTTCTATCATATTGTGTTAAATTACTACTTCTAGAAATTCATGTAAATGAAATCAACCAGAATGTGATGTTTTCAGACATGCAATGATTAAGAATTATATCATGGAAAATTGGGTAATCATCCCCTGAAACAAGAGAGAAGATCCTGAAGTTTAGAGAAAAAAGAATAAAAAGAAACGAACAAAGCCTCCAAGAAATATGGGGCTATGTGAAAAGAC read_through 45.50 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr9 84849460 + intergenic NA chr9 84888322 + intergenic ? 7 8 118 141 0.000 0.000 507 403 0.880 0.890 118 118 7 8 TGAAAGCTGAGGATTCCAAGAAACGACAAGAAAGACAGGAAAAGAACAACAGGGGAACCAAGAGATTATATTGCTGCTTGAAAATTGTGAAGATCTACATTATAGGCAACATTCCAGATATGGAAACTGAGCCCTCACACATGGACTGAATTCTGACAAGCAGAGGATAAAGGCAGAACAACATGACTGAAGGGAAGATGCTTTTGTGATATATCCCAGCATGCTGATGACCCCAAGGAGGACCACTGGATACCTAGC read_through 45.50 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr18 68198932 - intergenic NA chr18 68157493 - intergenic ? 13 13 93 139 0.000 0.000 588 318 0.480 0.250 121 122 26 28 CGGGGGTGGGAGGGCGAAATAAAGAGCCAGTTCAGCATGGGTAGGGAGGCCTCAGGAAACTTTCAATCATGGTGAAAGAGGAAGCAAACACATCCTTCACATGGCAGCAGCAAGAAGTGCCTCTTTCTCAATCTTACCGCCCCTCCTCCATGTCCCACAGCCTCTCCGTGCTTTCACTTCCCAGTTCTGCTGCAATCTTTCAGCTTGTATCTTCTCATTGGAACTGTGAGCTCATCCAGCAGAGATATGTGTCACTCCT read_through 45.30 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr1 105000528 + intergenic NA chr1 105010556 + intergenic ? 10 10 105 126 0.000 0.000 537 363 0.770 0.530 105 105 12 18 CTCCATGATTGTGAAGCCTCCTCAGCCATGTGGAACTGTAAGTCCATTAAACCTCTTTTTCTTCCCAGTCTCAGGTATGTCTTTATCAGCAGCATGAAAATGGACGTGTTCCAGATGTCCAGACTCTAAGCACCAATTCTTCCCAGTGTTCAGCTGCTGTGTTAATCCTCTGCGGGGGTCTGCCGCACACTCCTCTGGCAAGGCATTCCAGGGAGGCAATTGCCTATGCT read_through 45.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 SWSAP1 chr19 11478850 - intron TMEM205 chr19 11453796 - coding > 6 6 82 215 0.000 0.000 265 185 0.110 0.020 82 82 52 883 GCATCATCACGGCTCGCGACAGTCTCGACTTCCTGGGCTCAAGGGACTCCCATCTCAGCCTCCTGCATAGCCGGGACTACAGCTTTACCTGCTGTTCCTGAGCCTTACGCTGGCCACTGTCAACGCCCGCTGGCTGGAACCCCGCACCACAGCTGCCATGTGGGCCCTGCAAACCGTGGAGAAGGAGCGAGGCCTGGGTGGGGAGGTACCAGGCAGCCACCAGGGTCCCGATCCCTACCGCCAGCTGCGAGAGAAGGACCCCAAGTACAGTGCTCTCCGCCAGAATTTCTTCCGCT read_through 45.00 RT 0 NLoss 3,3,3 ,, ,, ,, ,, ,, ,, ,, NM_001145416,NM_033408,NM_198536 89,89,89 ,, tuple,tuple,tuple 265,265,265 570,570,570 ,, ,, ,, ;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001145416,NM_033408,NM_198536 ,, ,, MV4_11_RNAseq_1 FAM180B chr11 47573985 + intron PTPMT1 chr11 47587458 + coding > 9 9 119 46 0.000 0.000 152 448 1.000 0.050 119 119 28 538 CAACCACGACACCACTGGCTTTAAAATCAAAGCCTGGTCCCTAGCGAAGAAAGCGCTTTAATGTGCTCCTCCCGCTCCCGGGTGCGAGATTCCTGCCCAGCTACTAGGCCACGACTGGCTGGTACAGGACGAGAACGTGCGCGGGGTGATCACCATGAACGAGG read_through 44.80 RT 0 NLoss 0,0,3,0 NM_006560,NM_006560,, ,,, 1,1,, ,,, ,,, ,,, ,,, NM_001143984,NM_175732,NM_001143984,NM_175732 95,59,95,59 1,2,, tuple,tuple,tuple,tuple 284,175,284,175 456,606,456,606 39,39,, ,,, QPRHHWL*NQSLVPSEESALMCSSRSRVRDSCPATRPRLAGTGRERARGDHHER,NHDTTGFKIKAWSLAKKAL*CAPPAPGCEIPAQLLGHDWLVQDENVRGVITMNE,, CELF1:NM_006560[1,1]-PTPMT1:NM_001143984[1,2];CELF1:NM_006560[1,1]-PTPMT1:NM_175732[2,4];; geneB_transcripts=NM_001143984,NM_175732 ,,, 0,1,, MV4_11_RNAseq_1 NA chr5 49912675 + intergenic PARP8 chr5 49949858 + intron > 5 10 147 85 0.000 0.000 186 226 0.210 0.710 147 147 188 137 GTGATGACATCTTTTTAAGTGCTTAACACAATTCCTCACACATAGAAAGCAATAATAAACATTGGCTAGCATTGTAAGGATGTTTATTGTCTTCTAATGTGTTTTCATACGTTTTCTCTCTGGGATCTTGAGTGAAACATGTGGATAGTTCTGCAGGCTGCACAAGAAGCATGGCCCAAGCATCTGCTTCTGGTGAAAGCCTCACGTGCTGCTGCATTCATGGTGGAAGGT read_through 41.20 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 BACH1-IT2 chr21 30783944 + intergenic NA chr21 30816574 + intergenic > 5 5 105 56 0.000 0.000 194 406 0.560 0.560 108 108 8 8 GCTGGCCACGATGAAAAGACTCCTGGAAAACCATGAGGTGGCCCTCCCAAACCCTAAGATTGGAATGTGGTTTTCCTAGGGAAAGAAGACTCATGAGCTGTCTGGAGGAAAAGAAGTCATTATACAAAAAAGATACTTGCACACACATGTTTATAGCAGCACA read_through 40.60 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr5 49909886 - intergenic NA chr5 49876350 - intergenic ? 0 20 101 143 0.000 0.000 0 810 0.000 0.300 101 101 160 66 TGTTGTCCACTCTGGAGTGCAGTGGCTATTCACAGGCTTGATCATTGCATACTACAGTCTTGAACTCCTGGACTCAAGTCTCCCAGTGGCTGGGACTACAGGAGCTAGTTTGAGGCACTAAGAAGAATAAAATATCAGATTAAAAACAGTCCCTATTTGACTATATCCAGAATCTACAAGGAACTCAAACAAATCATCAAGAAAAAAACAAACAATCCCATCAAAAAGTGGGCTAAGAACATGG read_through 40.50 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 RAB18 chr10 27798859 + coding NA chr10 27872796 + intergenic > 6 3 60 111 0.000 0.000 390 78 0.030 0.430 67 67 448 6 GCAAGTCCAGCCTGCTCTTGAGGTTCACAGATGATACGTTTGATCCAGAACTTGCAGCAACAATAGAGCCTTTGATGGGAATTCAGCCCAGCTGACACCTTGATGTCCACCTTGTGATACCTTGGGAAGAATCCCTGCCCCACCATGCTGAACTTTTGATCTACAAAACTGTGAGCT read_through 39.00 RT 0 CLoss ,,,, NM_001256410,NM_001256411,NM_001256412,NM_001256415,NM_021252 ,,,, ,,,, ,,,, 124,124,124,114,124 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ;;;; geneB_no_transcripts ,,,, ,,,, MV4_11_RNAseq_1 SDHAF2 chr11 61205585 + coding CPSF7 chr11 61236108 + intron > 9 9 309 53 0.000 0.000 210 390 0.020 0.080 309 309 945 86 ATTGTCTCCTTTGCTCAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGATTCCCAAAAGGACATGATTGAAATCCCTTTGCCTCCATGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCCTGCTCTATGAGAGCAGAAAGAGGGGAATGTTGGAAAACTGCATTCTTCTTAGTCTTTTTGCTAAAGAACATCTGCAGCACATGACAGAAAAGCAGCTGAACCTCTATGACCGCCTGATTAACGAGCCTAGTAATGACTGGGATATTTACTACTGGGCCACAGGGCCTGTCCTGTGTGCTTCTTGAATCAGGGAGAAGGTTTTATACAAGAAAATG read_through 39.00 RT 0 CLoss NM_017841 370 geneB_no_transcripts MV4_11_RNAseq_1 NA chr13 105457969 + intergenic NA chr13 105476014 + intergenic ? 6 5 132 207 0.000 0.000 388 381 0.860 0.830 132 132 6 5 AGTTGGGTTCAGTAAGGGTCTGGCCAATCGGGTCACTCACAGTCTCTCAATCATCACAGAATTAGTTGGTTAGGATGGCTGCTGTGAAACCCGGCTTCCTGTTATCTCCTAGGCAGTGCTGCTCACTGATGTGTAACATTTGGTGAGAAGGAGGTAAAATGATCCTTGATAGGATAAGAGATCATTCTCATTGATTTCTCTGGGAAGCAGATGCTGAGACGGAAGCCAGCACTAAAAGTTCACTGTGGTGTAACACCTTATGAGTGCTGAAACAAGAAGACAGACTGCCCCAGTTCAGTCTCTGTGGGAAATGTTTATGCCTGGCGACCGAAATTTTT read_through 38.45 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 PDE3B chr11 14882912 + coding CYP2R1 chr11 14907352 + coding ? 7 7 131 106 0.000 0.000 406 344 0.030 0.150 131 131 278 9 GAGTAATGAAAATGATCGCCTCTTGGTATGCCAGGTGTGCATCAAACTGGCAGATATAAATGGCCCAGCAAAAGTTCGAGACTTGCATTTGAAATGGACAGAAGGCATTGTCAATGAATTTTATGAGCAGGAAGGCATGGTCTGTCTGCAAAAATTTCGCTTTGATGAACAAGGCATTCCTTTACTACATCATAGCCATTTAGAACCACAGTTGATATGCCTCCAAGATCTAAACT read_through 37.50 RT 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 NA chr14 99542331 - intergenic NA chr14 99522796 - intergenic ? 5 5 101 86 0.000 0.000 322 428 0.420 0.420 101 101 11 11 GAGAGATAAGAGCAGCCTCCATGAAGATGTGATGCTTGATCTGAGACTTGCAGGGTCGGCAGCTCCTTGGCCAACAGAAGGGAGAGTGGGAAAAGGGAGAGTTCATCTGTAAATTGATGAATGAATGCTTGGCATAGACTGATGAGAAAAAAAATACACCAGGACTTGGTTCAAGCCTTCCTGGGA read_through 37.50 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chrX 102272635 - intergenic NA chrX 102251992 - intergenic ? 8 8 94 81 0.000 0.000 368 382 0.420 0.360 94 94 18 21 ACAACCCCTCCACCTTTCTGCTCAGCGATGTTTAAACTGCAGTTCAGGCTTCTGTCACAAGGCGACATCAACGTACCAGTATTATCAAACTTCTCTTCTCAAAGCAGTGAATCCCAGGAGGTACCATAATGAAGTTTCAGAGCACTTTCTACCGTTCTAGAGGCAGTGACTTCT read_through 37.50 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chrX 36982438 + intergenic FAM47C chrX 37003172 + intron > 9 9 97 70 0.000 0.000 248 352 0.270 0.270 97 97 32 32 TCTTGCTTCTTTGAATGTGCAGACGACTTCTGTGTACTCGCCCTCAATCTTGGCTAGCATTTTAATACTGAATTGGCTTTTTTCCTGTGAAGAAAACTCCACATCGGCCCCGAAAAGTTCCATTACTTTCTAGCACTCTTAACATTCGAGGGTGCCTCAGCTTTTG read_through 37.24 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 LPPR3 chr19 834620 + intron PRTN3 chr19 843461 + coding > 2 33 281 487 0.000 0.000 82 370 0.000 0.070 281 281 653 3772 CGTCCTCTTCCTGTCTCTGTGGATGGGCTTGTCCTGGACATTTCATAGCAATGGGATCACACACTGTGTGGTCTTTCGTGTCCGGCGTCTCTCACGGAGCGTGACGTCCTCACGGTGCCTCCGCGCCGTGGTCGGGTCACAGCTGGGTCCGTTTCACGGCTGCGTCCTGTTGCCACGCCTGGAGGCCTCACTGTGCTGCTCGAGGCCCCTGTGGATGGACGTCTGAGCCTCTCCACTTCCGGCCACTGTGACCCTCACTGCTGTGGACACTCATGTGCAGGTGCTGCCCGAGCTGCGGAGATCGTGGGCGGGCACGAGGCGCAGCCACACTCCCGGCCCTACATGGCCTCCCTGCAGATGCGGGGGAACCCGGGCAGCCACTTCTGCGGAGGCACCTTGATCCACCCCAGCTTCGTGCTGACGGCCGCGCACTGCCTGCGGGACATACCCCAGCGCCTGGTGAACGTGGTGCTCGGAGCCCACAACGTGCGGACGCAGGAGCCCACCCAGCAGCACTTCTCGGTGGCTCAGGTGTTTCTGAACAACTACGACGCGGAGAACAAACTGAACGACGTTCTCCTCATCCAGCTGAGCAGCCCAGCCAACCTCAGTGCCTCCGTCGCCACAGTCCAGCTGCCACAGCAGGACCAGCCAGTGCCCCACGGCACCCAGTGCCTGGCCATGGGCTGGGGCCGCGTGGGTGCCCACGACCCCCCAGCCCAGGTCCTGCAGGAGCTCAATGTCACCGTGGTCACCTTCTTCTGCCG read_through 37.00 RT 0 NLoss 3 NM_002777 21 tuple 62 771 geneA_no_transcript_IDs_found geneB_transcripts=NM_002777 MV4_11_RNAseq_1 NA chr21 25801218 + intergenic NA chr21 25814109 + intergenic ? 8 7 143 77 0.000 0.000 324 401 0.360 0.640 143 143 21 10 TGGAAAATGAACTTGCCAGTTCACAGCTATGTCCTTCCCAATTTAGGAGGTTAAGGGCAGGAAAAACATGAGAAACTCTTTTGAGAAGCTGCACAAGCTGACATGGAGGATCAAGGATTTCAAAAGCTTTGAATATAAAGAGACTCTAGACAGCTTATACGTATTTGGACAAGGCAACGTGATGAAGAAATAATATAATTGTAGGATCACCTCTGTCCA read_through 36.25 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr5 49876350 + intergenic PARP8 chr5 49935089 + intron > 0 4 103 71 0.000 0.000 0 361 0.000 0.110 103 103 66 240 TTCTTGATGATTTGTTTGAGTTCCTTGTAGATTCTGGATATAGTCAAATAGGGACTGTTTTTAATCTGATATTTTATTCTTCTTAGTGCCTCAAACTAGCTCCTGGTTTTAAGGAATGAATGGCCATGTCAACTATTGGAAGCATCTTTGAATTGGAGCCTCTATGTTCAGGT read_through 36.10 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr16 85887635 + intergenic IRF8,MIR6774 chr16 85912506 + intron > 9 9 87 104 0.000 0.000 336 264 0.690 0.000 87 87 12 11 GCCCTAATGGCAGCTATAATTTGGAAGTCAAATGCAGCAGGGAGCTCTTAGAGCTGATGCATGATTCCTGCATACAGGCAGCCAAGCACATCTCAACTAATGACAGCCATGTCCCTGACTCTCCCCGGACACATATGACCAGTGGTTGCCATGCCAGGTGGACAGGAGGAGGCAGTGCCTGCCTGAAGGA read_through 33.60 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 SPN chr16 29674637 + 5utr QPRT chr16 29705985 + coding > 10 10 57 120 0.000 0.000 331 119 0.040 0.130 57 57 691 404 CTCGGGAGGTGGTGGAGTGACCTGGCCCCAGTGCTGCGTCCTTATCAGCCGAGCCGGCCTGGCGCTGCTGCTGCCGCCCGTCACCCTGGCAGCCCTGGTGGACAGCTGGCTCCGAGAGGACTGCCCAGGGCTCAACTACGCAGCCTTGGTCAGCGGGGCAGGCCCCTCGCAGGCGG read_through 33.10 RT 0 NLoss 0,0,0 NM_001030288,NM_003123, ,, 1,1, ,, ,, ,, ,, NM_014298,NM_014298,NM_014298 5,5,5 2,2, tuple,tuple,tuple ,, ,, 18,18, ,, SGGGGVTWPQCCVLISRAGLALLLPPVTLAALVDSWLREDCPGLNYAALVSGAGPSQA,SGGGGVTWPQCCVLISRAGLALLLPPVTLAALVDSWLREDCPGLNYAALVSGAGPSQA, SPN:NM_001030288[1,1]-QPRT:NM_014298[2,4];SPN:NM_003123[1,1]-QPRT:NM_014298[2,4]; geneB_CDS_mapping_exception=NM_014298:-2 geneB_transcripts=NM_014298 ,, 1,1, MV4_11_RNAseq_1 ZC3H12B chrX 64719039 + coding LAS1L chrX 64737867 + coding ? 8 8 119 144 0.000 0.000 262 373 1.000 0.030 119 119 11 523 CTTCACACCATCCCGAAGAGTCCAAGGCAGGAGGGTTGTCTGCTATGATGACCGGTTCATAGTCAAACTGGCTTTTGATTCTGATGGCATCATTGTGTCCAATGATAACTACCGAGACCTGAGCTAACCTGCCATGCAGAGCCCTGCAAAGCTCCTCTTTTCTGGGCCAGAAGCCTAGCATTCTCGGCAGTGGGGGACTCTTGCCCTGTAGAGAAAGGCCCCACCTCCATTCTGTCTTCCTCTTCATCATCTTCATCATCTT read_through 31.75 RT 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 NA chr17 29372299 + intergenic NF1 chr17 29385459 + intron > 3 3 58 118 0.000 0.000 310 140 0.230 0.020 77 77 12 12 AACTAGTTTCTGTGTCACTCTGTATGCTTTCCATACATTTCCATCAATGTATGAAATATAGTTTCCTTGGAAATTTCAGCCGGGCGCCGTGGCTCACGCCTGTGATCCCAACACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCAAGAGATGGAGACCATCCTGGCCAACATGGTGAAACCTCTTCTCTAC read_through 31.00 RT 2 other geneB_no_transcripts MV4_11_RNAseq_1 LOC339622 chr21 26453344 + intergenic NA chr21 26509213 + intergenic > 6 0 103 94 0.000 0.000 310 0 0.160 0.000 103 103 37 32 TTGGGGTTTCACCATGTAGTCAGTCATGTAGTCATGATTGGCTGAGTCATTGGCCATGTCATTGAACTTGATCTCCTGTCCCTTGTCATCTCCTCAGAAGATAGTTCCGCAGGCTGTACAGGAAGCATGACTGGGGAGGCCTCAGGAAACTTACAATCATAGCAGAAGGCCAAGGGGAAGCAGGCTCTTACATGCTAGTTTTTCCTCCT read_through 31.00 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr3 18568818 + intergenic NA chr3 18633127 + intergenic ? 6 8 147 131 0.000 0.000 324 288 0.050 0.300 147 147 128 26 AAGCCTGAACTTTCTCATCCAACACCCGTTCAAGTCGGAGGATGCTGATTAATTCATGATGGAAAGGTATCAATTTCACAGCCCAGACCTCTACATTCTTGAAATGCTCTTCTCATGGGAGACATTAAATAAGCTTTGAATTAACTGGACTTATCTTCCTCAGTTCTCTGTGATGAACTTTTGTAGAGCCATACGAAAGGAGGTTTTTAGCTCTCACCTGTGGTCTTTCTTCATCATGCACCTCCTAGATTCAAAAGTTCAGCAGGGACATGTCAAG read_through 30.60 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 METTL13 chr1 171759756 + coding DNM3 chr1 171783015 + intron > 6 6 54 104 0.000 0.000 305 145 0.050 1.000 54 54 294 17 CAAAGCCATGATCGCTGGCCTTGCCCTGCTGAGAAACCCAGAGCTACTCCTAGGGTCACCAGATCCTCCTCCTCCTGCAGGCTCACCATGGCTTCAAAAGAATTCAGTGTTCTGCAAGACTCTTCAGTCCTACTACTGCTCTCTATTGAGATTGGAT read_through 30.50 RT 0 CLoss ,, NM_001007239,NM_014955,NM_015935 ,, ,, ,, 1006,1216,1474 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 NA chr1 192926434 - intergenic NA chr1 192905033 - intergenic ? 8 8 111 84 0.000 0.000 244 356 0.570 0.450 111 111 13 17 CTAAATATCCTACAGTGCACAGAACGGCCACCAACGACCAAGAATTATCCAGTCCAAAATGTCAGTAAAGCTGAGGTTAAGAAATCCTGTTCCAGAATATCACATTTTTTGGATGCTGTGGTACCTGGAGTGATGCCAGACTGCAGAGGCCACCTGGTGACATGAGGAGAGATTCAACTTAACATGGTGAGGAT read_through 30.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr11 27945942 - intergenic NA chr11 27879463 - intergenic ? 5 5 109 99 0.000 0.000 278 322 0.630 0.830 109 109 7 5 GTGAAGTGCTGGCTTCCCTTTGCCTTCCACCATGATTGTAAGTTTCCTGAGACATCCCCAGATGCCAAGCAGATGCCACCATCACATTTCCTGTACAGCCTGTGGAACTATGTTGATGACCAGAATAACACCTGCTCCACCGAAGTCTCAGAGCAGCAGTGGGAATCACGTGACACAGTCATTCACTCAGCAAGTGTGTGTGGAGTG read_through 30.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 CERS5 chr12 50523310 - 3utr COX14 chr12 50506084 - 5utr ? 6 6 110 241 0.000 0.000 342 258 0.080 0.020 110 110 18 2007 TTTATGTTTTTTAAGAAAAAGAAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGCGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGACCGAGACTCTGTCTGGATGCTGCAGCTCCTTCGCATCCAACCGAGGCCTCCTCAGGCAGGCAGGGTCTCGAGGCCACTGTCTACGCAACTTCCCAGCACAGCCGAACGCAGCACTCGGAACCAGACACGTGAGGGTAGCGTCCCTGGACAACCCTGAACGCCTCAGCTATTGGTGCAGAAAGCAACTTTCTCCCTCCCACCTGCCGGGTTAGCCTCTAGGATTCGGCTTGCCGCGCTATAAAGGGAACTGCG read_through 30.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 GTF2A1 chr14 81631537 - intergenic TSHR chr14 81620475 - intergenic ? 8 8 174 137 0.000 0.000 234 366 0.730 0.620 174 174 10 12 CCTGGAATAACGTTGCTTTGGATTTAACAACAGTTGGGCAAAGGAGGTCGGTATACAGATACAGGACAAGAAGAGTGGTGTCAAAGGGAGGCTAAATCATTGGTTCTGGCTTCATCTAAGGAATTCTTATGAGAAATCGAGGGAGAGACTGTCCTGGGAAGTCTGATGAAACATAAATGGGGTTTTGCCATGTCGCCTAGGCTGGTTTCAAACTCCTGGACTCAAGCGATCTGCCCGCCGCAGCCTTCTAAAGTGCTGGGATTACAGGTTTGGCCTGCAGATGATGAAAACAGGTATGAGGTCAGGCATCN read_through 30.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 EMC3 chr3 10011403 - coding PRRT3 chr3 9990597 - coding > 6 6 148 83 0.000 0.000 164 136 0.010 1.000 148 148 1020 12 CTGGTACTTCCTCAATGTATTTGGGCTTCGGAGCATTTACTCTCTGATTCTGGGCCAAGATAATGCCGCTGACCAATCACGAATGATGCAGGAGCAGATGACGGGAGCAGCCATGGCCATGCCCGCAGACACAAACAAAGCTTTCAAGAGAGAGCAGCAATGAATGGAGCAGACCCCATCTCCCCCCAGCGGGTGAGAGGAGCTGTGGAGGCCCCAGGCACCCCCAAGTC read_through 30.00 RT 0 Fusion 0,3 NM_018447, , 7, , 657, , , NM_207351,NM_207351 339,339 3, tuple,tuple 1016,1016 2946,2946 49, , LVLPQCIWASEHLLSDSGPR*CR*PITNDAGADDGSSHGHARRHKQSFQERAAMNGADPISPQRVRGAVEAPGTPK, EMC3:NM_018447[1,7]-PRRT3:NM_207351[3,4]; geneB_transcripts=NM_207351 , 0, MV4_11_RNAseq_1 PIGZ chr3 196678692 - coding NCBP2 chr3 196666303 - coding > 6 6 93 145 0.000 0.000 114 186 0.610 0.020 93 93 14 392 GTCTCAGCCTGCTCCGAGTGCTGTGGTGTCTCCTTCCGCAGACGGGCTATGTGCACCCAGATGAGTTCTTCCAGTCCCCTGAGGTGATGGCAGGGTGACAATGAAGAACAAGAAAAATTACTGAAGAAAAGCTGTACGTTATATGTTGGAAATCTTTCTTTTTACACAACTGAAGAACAAATCTATGAACTCTTCAGCAAAAGTGGTGACATAAAGAAAATCATTATGGGTCTGGAT read_through 30.00 RT 0 Fusion 0,0,0,0 NM_025163,NM_025163,, ,,, 2,2,, ,,, 211,211,, ,,, ,,, NM_001042540,NM_007362,NM_001042540,NM_007362 27,27,27,27 2,2,, tuple,tuple,tuple,tuple 79,79,79,79 312,471,312,471 31,31,, ,,, VSACSECCGVSFRRRAMCTQMSSSSPLR*WQGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD,VSACSECCGVSFRRRAMCTQMSSSSPLR*WQGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD,, PIGZ:NM_025163[1,2]-NCBP2:NM_001042540[2,4];PIGZ:NM_025163[1,2]-NCBP2:NM_007362[2,4];; geneB_transcripts=NM_001042540,NM_007362 ,,, 0,0,, MV4_11_RNAseq_1 NA chr4 55668528 - intergenic NA chr4 55656002 - intergenic ? 5 5 105 265 0.000 0.000 270 330 0.090 0.120 105 105 53 41 GTTCTTTTATGATTTTTTAATTAAGGAAAAAAGTGTTTTGCTTAGAATATATACATCTACATATTTGAAAGAAAATACACCAAAATGTCAAGTGTTCATTTTGAGGCAAAGGATCTAAATAGAAAACATTAAAGAAGTCTCACTCCGATGAATGAGGCCGAGCCTGCAGCTCAAGGAAACCCTGGAGACTGCATAGGGTGTTGGAAGAAAGAATCTCAGAAGAAAGAAATCTTCCCATGAAGAGAGAACATCAATTTCCAAGCCAGCAAGGGCGAGCTGGGGCCTCAGGAAGGAGGGGTGGGGTGGAGAGTGAACAGATCCACACACTGGTAAGGTAGATGAATAAGAGAGAAACACCTAAAGCTTGCC read_through 30.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 SCLT1 chr4 129809834 - coding JADE1 chr4 129795621 - 3utr > 11 11 93 143 0.000 0.000 114 186 0.090 0.230 93 93 113 103 GAAAAGCTAATTCTAGAGCATCAAGAAAAAGCCAACAGACTTCAAAGGCGTCTAAGTCAGGCAGAAGAGAGAGCTGCTTCAGCTTCCCAGCAGCATAACTTGGAACATTTGAAAGCTTTTCAACCTAAATGTGGGGAAAAAACAGGGCTAACTCCATGCAGAACTCATCAGGTGGCTGATGGCTGCCTCTGCTCCCTCTACCTGGTTACAGAGCAGCACCTGCGCCGCGCTCCTC read_through 30.00 RT 0 CLoss ,,,,, NM_144643,NM_144643,NM_144643,NM_144643,NM_144643,NM_144643 ,,,,, ,,,,, ,,,,, 2004,2004,2004,2004,2004,2004 ,,,,, ,,,,, NM_001287437,NM_001287439,NM_001287440,NM_001287442,NM_001287443,NM_199320 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001287437,NM_001287439,NM_001287440,NM_001287442,NM_001287443,NM_199320;geneB_transcript_strand_disagree=NM_001287437;geneb_utr_codons=13;geneB_transcript_strand_disagree=NM_001287439;geneB_transcript_strand_disagree=NM_001287440;geneB_transcript_strand_disagree=NM_001287442;geneB_transcript_strand_disagree=NM_001287443;geneB_transcript_strand_disagree=NM_199320 ,,,,, ,,,,, MV4_11_RNAseq_1 SLC36A1 chr5 150859050 + coding FAT2,MIR6499 chr5 150891849 + coding ? 9 9 89 98 0.000 0.000 316 284 0.630 1.000 89 89 20 9 ATCATCCCCTTCTTTGTGTCCCGAGCGCCCGAGCACTGTGAGTTAGTGGTGGACCTGTTTGTGCGCACAGTGCTGGTCTGCCTGACATGGGCCAGCAGATCTAGAGCCTCTTCGTTGACCACGACAGCATCCAGGCAGCCTTCAAAGCCCTGGGAGACATTCGAGGAAGAATGCAACAGAATGAGG read_through 30.00 RT 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 NA chr8 130411930 + intergenic NA chr8 130492889 + intergenic ? 13 13 31 235 0.000 0.000 567 106 0.070 0.070 31 31 195 192 TTGATCTCTAAGACATGATTTCCAAGTTTGCAGTTAATGATGTTGGCCCCTCAAACAGCCCATGGTCCTTTAAAAGGCCTTCCTCCTGTCCCCTTCAGTCCTGGACTGAGTTCAATGCACACATCTTGCACAGAATAGATGTTCATATATTCTTGGTTTAAGTGCCTATCAACCTTCATATAATTCCACTGGGTCTACTGAAAGATGGCAGAAGACGGACAGTCATAGTGTTTACTATGGGCCAAATCCTTCTCCCATATTTGCT read_through 28.35 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr4 55697968 - intergenic NA chr4 55668808 - intergenic ? 0 11 132 95 0.000 0.000 0 556 0.000 0.220 132 132 77 49 GCAAAAGCCATTTTGTAGCTCACACACTTCGTTGCTGATCTGCAAACTCACCTTGGAATAAAGCAGAGCTGGGCCTCAATTATTCCCCTTTTCTCCTGGATCTTCCTTCAGTGTCACTGACTCCTGGACCAGGTGATGCTGATGCACAGTTGAGGGGTGTGAAAAATCAAGCAAAACTCTCCGTGAATGCTGAATGACAACCACAAGCTCTGTTTGTTGAGGATCT read_through 27.80 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 EVI5 chr1 92981753 - intron GFI1 chr1 92948603 - intron > 5 5 147 69 0.000 0.000 136 245 0.360 0.010 147 147 16 379 GTTTTAATTGCAATAAATTTTGTTAGAGCAAAGGAAAGCTGCAGCTTTCCAAACAGTTGGGAAGTTGTGGTTCTTCTGCCATACTCCTCCTTTATAACAGCCAGGAAGAAGGAAGACACATGTTCCATATGATTTCTTCAAAAAGGTCTCCTCTTTGCAGACAGCACTTCAAATGCAGGCGGGGCGAAGGCGGAGCCCCGGGACCGTTTGTCCCC read_through 25.18 RT 0 other 0,0,0,0,0,0 NM_005665,NM_005665,NM_005665,,, ,,,,, 17,17,17,,, ,,,,, 2119,2119,2119,,, ,,,,, ,,,,, NM_001127215,NM_001127216,NM_005263,NM_001127215,NM_001127216,NM_005263 39,39,39,39,39,39 3,3,3,,, tuple,tuple,tuple,tuple,tuple,tuple 116,116,116,116,116,116 1269,1269,1269,1269,1269,1269 53,53,53,,, ,,,,, VLIAINFVRAKESCSFPNSWEVVVLLPYSSFITARKKEDTCSI*FLQKGLLFADSTSNAGGAKAEPRDRLS,VLIAINFVRAKESCSFPNSWEVVVLLPYSSFITARKKEDTCSI*FLQKGLLFADSTSNAGGAKAEPRDRLS,VLIAINFVRAKESCSFPNSWEVVVLLPYSSFITARKKEDTCSI*FLQKGLLFADSTSNAGGAKAEPRDRLS,,, EVI5:NM_005665[1,17]-GFI1:NM_001127215[3,7];EVI5:NM_005665[1,17]-GFI1:NM_001127216[3,7];EVI5:NM_005665[1,17]-GFI1:NM_005263[3,7];;; geneB_transcripts=NM_001127215,NM_001127216,NM_005263 ,,,,, 0,0,0,,, MV4_11_RNAseq_1 PTRH1 chr9 130476658 - coding C9orf117 chr9 130457420 - intron > 5 5 146 25 0.000 0.000 50 250 0.050 0.400 146 146 253 18 CGGAGCTGTTTGGGCTGACTGCCGAGGAAGTCTACCTGGTGCATGATGAGCTGGACAAGCCCCTGGGGAGACTGGCTCTGAAGCTGGGGGGCAGTGCCAGGGGCCACAATGGAGTCCGTTCCTGCATTAGCTGCCTCAACTCCAATGCTTGGCTTGGACTCATCGTCAAC read_through 25.00 RT 0 CLoss NM_001002913 462 geneB_no_transcripts MV4_11_RNAseq_1 NA chr1 103721789 + intergenic NA chr1 103742242 + intergenic ? 6 7 29 180 0.000 0.000 486 114 0.860 0.880 29 29 6 7 CATTTTTACTTTGAGATTCTTCATGAATCTTTCTTCATTGAGTTTTTTGTAGGGCATGAGAAAGACGATATTCCACACCTTAGTTCTCCACTAATTGTGCATGACATAGCAGCAATCCAGAATTCCTCATGAGTCCCACTGCCACACAAGCAAAACCCAAGGTAAGGCCAAGTTTACTGCTAAGTGTTTCTTCTTCACAGAACATAAT read_through 24.30 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 ANKRD18DP chr3 197790589 - 3utr LMLN chr3 197757927 - intron > 9 9 142 74 0.000 0.000 146 154 0.220 0.430 142 142 78 70 ATAAAGATTATAGTCTTTATCTAAGTGTTCTAAGTCATTCATTTTAACTAAACATATGGATTTGTCAAAAGAACACGACTTAAAAGTGGCTTCAGAGGAAAAGCAAGAAACGCTTGAAAGAAGTGAAAATAAACAGCCAGAGGCCTAGCTGAGGACCCTGAGGGCAGAGGTGAGGTCCCGCCTTCCCACGCTGTCAGCAGGCGTCACGGTGGAAA read_through 24.26 RT 0 other , , , , , , , , NM_001136049,NM_033029 , , , , , , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001136049,NM_033029;geneB_transcript_strand_disagree=NM_001136049;geneB_transcript_strand_disagree=NM_033029 , , MV4_11_RNAseq_1 NA chr6 159542282 - intergenic NA chr6 159527666 - intergenic ? 0 22 121 137 0.000 0.000 0 468 0.000 0.270 121 121 81 81 GTGATCCTGAGACTCTAAGCTCAGCTCCTGGCCCTCTTGGAGTGGCACCACCATGCCTGGTCCCCAGCCTCCCAGAGCACCCAAGGGGGAAAGCTGTGGTGTCCCTGCTACAAAGCACAGGTTCAATCATCCAGCTTTGTCCTGGACCTGGTCTGGGCGCACCGTGCTGGAGAGAGACCTGGCCCAGCCCACCAGCACGGCTTCTTCAGAGGACCTTTCTGGTCTACCTGATTCACCACAGCTTGATCATTTGCAGC read_through 23.40 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 DCLRE1C chr10 14996303 + 5utr MEIG1 chr10 15008439 + 5utr ? 6 6 54 128 0.000 0.000 446 154 0.110 0.590 54 54 33 24 GCCCTGCCCAGTGCAAGGCTCATTCCCGCCCAACAAACACAGGTGTTGCTCTGATATTATTGATAATAAGGCCTCTGTAACCATGGCTAGTTCTGACGTAAAACCAACATCAGTAAGTCATGCCAAAAAATGGTCAGAAGAGATAGAAAATCTATACAGAGTTCAACAAGCAGGATATCGG read_through 22.30 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr2 140169138 + intergenic NA chr2 140184221 + intergenic ? 12 12 72 109 0.000 0.000 382 218 0.330 0.390 72 72 35 30 ATCATATTGTGTTAAATTACTACTTCTAGAAATTCATGTAAATGAAATCAACCAGAATGTGATGTTTTCAGAATACCTGAAACTAAGCAATGGATAAAGAAGAAAAACGTATTTCATGTAATTCTGGAGGCTTGGGAAATCAAGGTCAAGAGGGAACATCTGGTGAGAGCCTTCTTGCTGATATA read_through 21.53 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 ACTR5 chr20 37396239 + coding PPP1R16B chr20 37408349 + intron > 5 5 171 47 0.000 0.000 94 206 0.050 1.000 171 171 216 6 CTGGGATTGCAGAGACTCTTCAGTACATTCTGGACAGGTACCCAAAGGACATTCAGGAAATGCTGGTTCAGAACGTTTTCCTCACTGGCGGCAACACGATGTATCCTGGCATGAAAGCCAGAATGGAGAAGGAACTGTTGGAGATGAGACCCTTCCGGTCTTCTTTTCAGCCTGCTCTTCTGGCTCCCTGCTGTCTAATGGAATTCCAGAGCTTGAC read_through 20.60 RT 0 CLoss NM_024855 1566 geneB_no_transcripts MV4_11_RNAseq_1 MED31 chr17 6553676 - coding KIAA0753 chr17 6532061 - coding > 6 6 145 54 0.000 0.000 106 194 0.040 0.220 145 145 523 19 CTCTGTCAGGCTGGTGGCGTTTTGGTGTCTTCGTTTGTTATGGCCGCTGCTGTCGCTATGGAGACAGATGATGCTGGAAATCGACTTCGGTTTCAGTTGGAGTTGGAATTTGTGCAATGTTTAGCCAACCCAAATTACCTTAATTAACCAGCTGCAGTTTAATAGGAATGTTCCTACACATTCAAGCAACTTGGCGAT read_through 19.40 RT 0 Fusion 0,0 NM_016060, , 2, , 106, , , NM_014804,NM_014804 32,32 3, tuple,tuple 94,94 2904,2904 48, , SVRLVAFWCLRLLWPLLSLWRQMMLEIDFGFSWSWNLCNV*PTQITLINQLQFNRNVPTHSSNLA, MED31:NM_016060[1,2]-KIAA0753:NM_014804[3,19]; geneB_transcripts=NM_014804 , 1, MV4_11_RNAseq_1 NA chr4 181157121 + intergenic NA chr4 181168288 + intergenic ? 4 4 28 132 0.000 0.000 384 66 0.040 0.040 28 28 111 102 GTCTAGGAACTTTGAAGAAACATGAAGAGAACCAACTTTGCACCCACAAGAGAGAAAAAGGCAAATAAATAATATTATATTTTGGAAGAGTCTTACAAAATGATTCATAATTAATTTGCAGTATACTATTCTAAAATTCTTTTGTAAGAGATTAAAGAA read_through 19.20 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr4 181157062 - intergenic NA chr4 181070934 - intergenic ? 0 10 95 57 0.000 0.000 0 378 0.000 0.070 95 95 102 144 GCCTTTTTCTCTCTTGTGGGTGCAAAGTTGGTTCTCTTCATGTTTCTTCAAAGTTCCTAGACATCTTTGGTGACAGTTCTCAAGTTGGATTTTTACTTCTCTGTCTGAATTTCCCCCTGAGGTTGTATGTTTCCTTGCCATTCACAGGATC read_through 18.90 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr2 140152259 + intergenic NA chr2 140168646 + intergenic ? 4 1 33 177 0.000 0.000 371 11 0.250 0.030 33 32 15 30 GCCGGCATCAGATTCCAATACATTATCAGCACCGGGAAGGCCTGCAGCTTCACTCCTGAGCCAGCGAGACCACGAGCCCACCAGGAGGAACGAACAACTCCAGAGGCGCCGCCTTAAGAGCTGTAACCCGGCAAAGGTCTGCAGCTTCACTCCTGAGCCAGGGAGACCACGAACCCACCAGAAGGAAGAAACTCCAAACACATCCGAAC read_through 18.55 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr16 72539430 + intergenic NA chr16 72556452 + intergenic ? 12 12 93 71 0.000 0.000 288 310 0.670 0.570 93 93 17 20 CTGTAATCTCAGCACTTTGGGGCACCAAGTGGGTAGATGGCTTGAGGCCAGGAGTTCAAGACCAGCCTAGGCAACATGGCAAGACCCCATCTCTCCTGCTACCGGTTCCTAACAGGTCACAGACTGGTATTGATCCATGGCCCAGGGGTAGGAGACCCTTGACGTGGTAGTCCAATGTTC read_through 17.45 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 SLC25A11 chr17 4843526 + intron RNF167 chr17 4843782 + 5utr > 3 0 137 340 0.000 0.000 166 0 0.120 0.000 137 145 59 159 GCGGAGCTGAAGGAGGAGCTTGATGGAAGCGTGCGAGAAGGGGCGTAACTGATTTGGAAACCAGAGGAAAGGCGCTGTTTTCACCGAATTAGAATCGCGGGAAAATAGAGAAGAGTTTGTTTGAAGGTCTCGCGAGGTGGGGATCGGAAGTCCTCCATCTCAAGCATCCAATGCTGAAAGCGGCCTGATTTTCTCTACCGGAAGCCCTTTTCCAGAGGCTGGGAACACGGCCCACCTAGCAGGAAGTCCCACCTCCTTGAGCTCCGCCACCCTTCCCGAAGTTTTTCTGTCACCTGTGTTAGGCTCCGTCCCCTTTCCGCGTTTTATCCCCGTACCAGAAAAGGATACATTTAGTGCCTCCCACCCAGCTCCACTAAACGGGTTGGATATCTCATTCTTTGAGTTGGTGTTCCTTCCCCGGCGCCCCCATGTAGCTGGGAAGTGGGACCTGGGGGTGGTTGGACCCCTGGGATCCTAAAGGAGG read_through 16.60 RT 0 other NM_015528 1053 geneB_no_inframe_contig_found geneB_transcripts=NM_015528;geneb_utr_codons=13 MV4_11_RNAseq_1 NA chr8 130680445 - intergenic NA chr8 130641491 - intergenic ? 5 11 85 141 0.000 0.000 130 190 0.110 0.240 85 85 44 45 CTGAGTTGCAATTTCCTTCTATATTCTGAATACAAATTCATCATCAGATATATGTGTTGTGAAGTTTTCTTCGAGGATTTTCCAGGGGATTCTGAACATCTCTGAAGCTATCGGTGCCCCTCAATGGATCTCTGTAACTTTTTAGCTGTGTGGCCATGTGCAAATCACTTGACCATTTTGAGACTCAGTTTCCTCCACTGTAAAATGAAGAGACTAGAACAGCAC read_through 16.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 LINC00662 chr19 28283908 - 3utr NA chr19 28220960 - intergenic > 0 6 143 72 0.000 0.000 0 158 0.070 0.100 143 143 224 59 CCTACACGCTTCTGAAACTGGTGTAGGAACAACCTCAGTTCTGTGAAAGGCGGACGCAGCAGGACAGAATCTCCGTGGACATCTGTCTGGAGGAGCAATTTTACTGCGACATTTTAAAGAAACAAATTTAATTGATTTCCAAGGTTAAAAACGCTCTTTTTGTAGAACCTACAAAAAGACATTTCTGAGCCCATTGAGGCCTACAGTGAAAAAC read_through 15.80 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr2 140151975 + intergenic NA chr2 140168646 + intergenic ? 5 5 127 139 0.000 0.000 108 192 0.310 0.160 127 127 15 30 CAGCTTCTGAGGACAAAACTTGTGATAGAATCTTTAATGTTCTGGAAGAAACTGTCATAGCAGACAGTAGAAATCATGCGCGCATGGTCTCATGATGCTGGGCCCTCCTATTTTGTCTTTAGAATCCGGGAAGGCCTGCAGCTTCACTCCTGAGCCAGCGAGACCACGAGCCCACCAGGAGGAACGAACAACTCCAGAGGCGCCGCCTTAAGAGCTGTAACCCGGCAAAGGTCTGCAGCTTCACTCCTGAGCCAGGGAGACCACG read_through 15.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr11 35071672 + intergenic NA chr11 35108175 + intergenic ? 5 5 60 102 0.000 0.000 292 158 0.330 0.310 60 60 14 15 GTAAGAAGTGCCTTTCACCTTCCGCCACGATTCTCAGGCCTCCCCAGCCATGTGGAACTTTTTCTAGGGCTGCCATAGAAAGTACGGCAAACAGGGCACCTGTAGTCCCAGCGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCACT read_through 14.60 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr4 55668528 - intergenic NA chr4 55656045 - intergenic ? 5 0 105 91 0.000 0.000 270 0 0.090 0.000 105 105 53 50 GTTCTTTTATGATTTTTTAATTAAGGAAAAAAGTGTTTTGCTTAGAATATATACATCTACATATTTGAAAGAAAATACACCAAAATGTCAAGTGTTCATTTTGAGGCAAAGGATCTAAATAGAAAACATTAAAGAAGTCTCACTCCGATGAATGAGGCCGAGCCTGCAGCTCAAGGAAACCCTGGAGACTGCATA read_through 13.50 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr1 161426920 - intergenic NA chr1 161403685 - intergenic ? 5 0 63 91 0.000 0.000 267 0 0.160 0.000 63 63 31 57 CTCGCCTGCCAGGCTGTGTGCAGGGTTCCCGCTGCCTCTGGCCGGCAGGCGTCCGGGCTGCAGTGGACAACTGGAGCACTACAGCCCCCCTTTCTAGGACACCCCTGAAGGACAGCAGTGAAGAGGAATCTTCCCAGTAAGCAGAACTTTGAG read_through 13.35 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 SATB1 chr3 18351731 - intergenic LOC339862 chr3 18327402 - intergenic ? 0 6 112 106 0.000 0.000 0 256 0.000 0.020 112 112 253 268 AGTTCTGTTTATGTTCTGTGAAGGCAGATAGTTTCTGGGGGAGAGAAAGAAGTGTGAAAAAGTCTGCCATCTATGCTCCTGAAGCCACCAGTCTCTGATGTGTCATGACAGACATCAACATGGTAGAGCATCAACTCAAGTTTGTAGAATGAGCTGGTCTTTTTCCTCAAATCCTGGCTCCACTTGATCATAGTCCTTCTATTCAAAGAGTTCACAC read_through 12.80 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr8 130678849 + intergenic NA chr8 130692174 + intergenic ? 7 7 30 143 0.000 0.000 240 60 0.160 0.170 30 30 43 41 GCCAACGTCTAAGCCACAGAGATGCAACCCATTCTTGAAGTTGAAATGCAGTCTTCGGCATTCTCCCAGAAATGATTCTCAGGAGTTGGGTTTGCAGCCAGCTGTTATGGATCTTCATAAACACCAGAAACTTTGAGAAGCTGAGGCAACACCGACAGCGGAGAACTGTCAC read_through 12.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr2 62658133 - intergenic NA chr2 62642564 - intergenic ? 11 12 56 144 0.000 0.000 148 159 0.550 0.600 76 76 19 19 CTCCTCTCTGCCAGCTGAGTCTATGAGAACAGTCTATGTTTATTGTGAGTTTGAGGAGTCCTTGTAGGTGGTTTTTCTGCACACAGGCCCAGGTACAGGCTCAGCCAGAAGAGGAATCTCCCAGGAGGGCCTCTCCCCAGGCCCAGGCAGGGAAGCACTGCCATGGATAGCATCTGCCAGGACAAGCTGACAGTTGCACATGGCTGGGGAGGCCTCACA read_through 7.40 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr4 115380370 - intergenic NA chr4 115299703 - intergenic ? 0 6 146 82 0.000 0.000 0 138 0.000 0.260 146 146 20 22 GGGATGACCTTAAGCCAGATGCATGGAGAGTTCTTTCATGAGAGAAGCTGGAGTTTAGGAACACACACAGGTAGACAGGTAGATGTGGTGGGGATGGTAGAGGCTTTTCTGATAGCTTCCATTTTCTTCTTGATGTTGTTATTCACCTCAATGATAGGATTGTAAAAGCTTCCCTGTTGCATTTCACTTGGTGGAGCTCTCAGATCACTTCTGGTTTGGAGCCGCCC read_through 6.90 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr2 140169141 + intergenic NA chr2 140227345 + intergenic ? 0 9 72 131 0.000 0.000 0 268 0.000 0.500 72 72 32 17 ATCATATTGTGTTAAATTACTACTTCTAGAAATTCATGTAAATGAAATCAACCAGAATGTGATGTTTTCAGATATATGATCTCTGGTTGTTTTGTGATCCCAGGATCTACTGAGATGTATAGCATAAGAAGTTATACACATCCTGGATTTTGTAAAGAACAGCTTCATTACTGGGTACAAAAAAAAGCAAGATAAAGATCAA read_through 2.99 RT 0 other unhandled orientation ?