This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by R configure 3.1.0, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure ## --------- ## ## Platform. ## ## --------- ## hostname = compute-0-5.local uname -m = x86_64 uname -r = 2.6.32-279.14.1.el6.x86_64 uname -s = Linux uname -v = #1 SMP Tue Nov 6 23:43:09 UTC 2012 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /opt/openmpi/bin PATH: /usr/lib64/qt-3.3/bin PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /sbin PATH: /bin PATH: /usr/sbin PATH: /usr/bin PATH: /opt/eclipse PATH: /usr/java/latest/bin PATH: /opt/rocks/bin PATH: /opt/rocks/sbin PATH: /opt/condor/bin PATH: /opt/condor/sbin PATH: /opt/gridengine/bin/linux-x64 PATH: /root/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:3671: checking build system type configure:3685: result: x86_64-unknown-linux-gnu configure:3705: checking host system type configure:3718: result: x86_64-unknown-linux-gnu configure:4436: checking for pwd configure:4454: found /bin/pwd configure:4467: result: /bin/pwd configure:4475: checking whether builddir is srcdir configure:4483: result: yes configure:4488: checking for working aclocal configure:4496: result: missing configure:4501: checking for working autoconf configure:4509: result: missing configure:4514: checking for working automake configure:4522: result: missing configure:4527: checking for working autoheader configure:4535: result: missing configure:4544: checking for gawk configure:4560: found /bin/gawk configure:4571: result: gawk configure:4582: checking whether ln -s works configure:4586: result: yes configure:4597: checking for bison configure:4613: found /usr/bin/bison configure:4624: result: bison -y configure:4640: checking for ar configure:4656: found /usr/bin/ar configure:4667: result: ar configure:4695: checking for a BSD-compatible install configure:4763: result: /usr/bin/install -c configure:4798: checking for sed configure:4817: found /bin/sed configure:4829: result: /bin/sed configure:4847: checking for which configure:4865: found /usr/bin/which configure:4877: result: /usr/bin/which configure:4897: checking for less configure:4915: found /usr/bin/less configure:4927: result: /usr/bin/less configure:4950: checking for gtar configure:4968: found /bin/gtar configure:4980: result: /bin/gtar configure:5002: checking for tex configure:5035: result: no configure:5047: checking for pdftex configure:5080: result: no configure:5090: WARNING: you cannot build PDF versions of the R manuals configure:5097: checking for pdflatex configure:5130: result: no configure:5140: WARNING: you cannot build PDF versions of vignettes and help pages configure:5147: checking for makeindex configure:5180: result: no configure:5192: checking for makeinfo configure:5225: result: no configure:5314: WARNING: you cannot build info or HTML versions of the R manuals configure:5325: checking for texi2dvi configure:5358: result: no configure:5375: checking for kpsewhich configure:5408: result: no configure:5417: checking for latex inconsolata package configure:5451: checking for unzip configure:5469: found /usr/bin/unzip configure:5481: result: /usr/bin/unzip configure:5497: checking for zip configure:5515: found /usr/bin/zip configure:5527: result: /usr/bin/zip configure:5543: checking for gzip configure:5561: found /bin/gzip configure:5573: result: /bin/gzip configure:5589: checking for bzip2 configure:5607: found /usr/bin/bzip2 configure:5619: result: /usr/bin/bzip2 configure:5637: checking for firefox configure:5670: result: no configure:5637: checking for mozilla configure:5670: result: no configure:5637: checking for galeon configure:5670: result: no configure:5637: checking for opera configure:5670: result: no configure:5637: checking for xdg-open configure:5655: found /usr/bin/xdg-open configure:5667: result: /usr/bin/xdg-open configure:5684: result: using default browser ... /usr/bin/xdg-open configure:5694: checking for acroread configure:5727: result: no configure:5694: checking for acroread4 configure:5727: result: no configure:5694: checking for xdg-open configure:5712: found /usr/bin/xdg-open configure:5724: result: /usr/bin/xdg-open configure:5745: checking for notangle configure:5776: result: false configure:5787: checking for realpath configure:5818: result: false configure:5831: checking for pkg-config configure:5850: found /usr/bin/pkg-config configure:5862: result: /usr/bin/pkg-config configure:5919: checking for gcc configure:5935: found /usr/bin/gcc configure:5946: result: gcc configure:6175: checking for C compiler version configure:6184: gcc --version >&5 gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:6195: $? = 0 configure:6184: gcc -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.6 20120305 (Red Hat 4.4.6-4) (GCC) configure:6195: $? = 0 configure:6184: gcc -V >&5 gcc: '-V' option must have argument configure:6195: $? = 1 configure:6184: gcc -qversion >&5 gcc: unrecognized option '-qversion' gcc: no input files configure:6195: $? = 1 configure:6215: checking whether the C compiler works configure:6237: gcc -I/usr/local/include -L/usr/local/lib64 conftest.c >&5 configure:6241: $? = 0 configure:6289: result: yes configure:6292: checking for C compiler default output file name configure:6294: result: a.out configure:6300: checking for suffix of executables configure:6307: gcc -o conftest -I/usr/local/include -L/usr/local/lib64 conftest.c >&5 configure:6311: $? = 0 configure:6333: result: configure:6355: checking whether we are cross compiling configure:6363: gcc -o conftest -I/usr/local/include -L/usr/local/lib64 conftest.c >&5 configure:6367: $? = 0 configure:6374: ./conftest configure:6378: $? = 0 configure:6393: result: no configure:6398: checking for suffix of object files configure:6420: gcc -c -I/usr/local/include conftest.c >&5 configure:6424: $? = 0 configure:6445: result: o configure:6449: checking whether we are using the GNU C compiler configure:6468: gcc -c -I/usr/local/include conftest.c >&5 configure:6468: $? = 0 configure:6477: result: yes configure:6486: checking whether gcc accepts -g configure:6506: gcc -c -g -I/usr/local/include conftest.c >&5 configure:6506: $? = 0 configure:6547: result: yes configure:6564: checking for gcc option to accept ISO C89 configure:6627: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:6627: $? = 0 configure:6640: result: none needed configure:6667: checking how to run the C preprocessor configure:6698: gcc -E -I/usr/local/include conftest.c configure:6698: $? = 0 configure:6712: gcc -E -I/usr/local/include conftest.c conftest.c:17:28: error: ac_nonexistent.h: No such file or directory configure:6712: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.0" | #define PACKAGE_STRING "R 3.1.0" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #include configure:6737: result: gcc -E configure:6757: gcc -E -I/usr/local/include conftest.c configure:6757: $? = 0 configure:6771: gcc -E -I/usr/local/include conftest.c conftest.c:17:28: error: ac_nonexistent.h: No such file or directory configure:6771: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.0" | #define PACKAGE_STRING "R 3.1.0" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #include configure:6800: checking for grep that handles long lines and -e configure:6858: result: /bin/grep configure:6863: checking for egrep configure:6925: result: /bin/grep -E configure:6931: checking whether gcc needs -traditional configure:6965: result: no configure:6977: checking how to run the C preprocessor configure:7047: result: gcc -E configure:7067: gcc -E -I/usr/local/include conftest.c configure:7067: $? = 0 configure:7081: gcc -E -I/usr/local/include conftest.c conftest.c:17:28: error: ac_nonexistent.h: No such file or directory configure:7081: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.0" | #define PACKAGE_STRING "R 3.1.0" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #include configure:7177: checking for gfortran configure:7193: found /usr/bin/gfortran configure:7204: result: gfortran configure:7325: checking for Fortran 77 compiler version configure:7334: gfortran --version >&5 GNU Fortran (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4) Copyright (C) 2010 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:7345: $? = 0 configure:7334: gfortran -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.6 20120305 (Red Hat 4.4.6-4) (GCC) configure:7345: $? = 0 configure:7334: gfortran -V >&5 gfortran: '-V' option must have argument configure:7345: $? = 1 configure:7334: gfortran -qversion >&5 gfortran: unrecognized option '-qversion' gfortran: no input files configure:7345: $? = 1 configure:7354: checking whether we are using the GNU Fortran 77 compiler configure:7367: gfortran -c conftest.F >&5 configure:7367: $? = 0 configure:7376: result: yes configure:7382: checking whether gfortran accepts -g configure:7393: gfortran -c -g conftest.f >&5 configure:7393: $? = 0 configure:7401: result: yes configure:7492: checking for g++ configure:7522: result: no configure:7492: checking for c++ configure:7522: result: no configure:7492: checking for gpp configure:7522: result: no configure:7492: checking for aCC configure:7522: result: no configure:7492: checking for CC configure:7522: result: no configure:7492: checking for cxx configure:7522: result: no configure:7492: checking for cc++ configure:7522: result: no configure:7492: checking for cl.exe configure:7522: result: no configure:7492: checking for FCC configure:7522: result: no configure:7492: checking for KCC configure:7522: result: no configure:7492: checking for RCC configure:7522: result: no configure:7492: checking for xlC_r configure:7522: result: no configure:7492: checking for xlC configure:7522: result: no configure:7546: checking for C++ compiler version configure:7555: g++ --version >&5 ./configure: line 7557: g++: command not found configure:7566: $? = 127 configure:7555: g++ -v >&5 ./configure: line 7557: g++: command not found configure:7566: $? = 127 configure:7555: g++ -V >&5 ./configure: line 7557: g++: command not found configure:7566: $? = 127 configure:7555: g++ -qversion >&5 ./configure: line 7557: g++: command not found configure:7566: $? = 127 configure:7570: checking whether we are using the GNU C++ compiler configure:7589: g++ -c -I/usr/local/include conftest.cpp >&5 ./configure: line 2242: g++: command not found configure:7589: $? = 127 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.0" | #define PACKAGE_STRING "R 3.1.0" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | | int | main () | { | #ifndef __GNUC__ | choke me | #endif | | ; | return 0; | } configure:7598: result: no configure:7607: checking whether g++ accepts -g configure:7627: g++ -c -g -I/usr/local/include conftest.cpp >&5 ./configure: line 2242: g++: command not found configure:7627: $? = 127 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.0" | #define PACKAGE_STRING "R 3.1.0" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:7642: g++ -c -I/usr/local/include conftest.cpp >&5 ./configure: line 2242: g++: command not found configure:7642: $? = 127 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.0" | #define PACKAGE_STRING "R 3.1.0" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:7658: g++ -c -g -I/usr/local/include conftest.cpp >&5 ./configure: line 2242: g++: command not found configure:7658: $? = 127 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.0" | #define PACKAGE_STRING "R 3.1.0" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:7668: result: no configure:7696: checking how to run the C++ preprocessor configure:7723: g++ -E -I/usr/local/include conftest.cpp ./configure: line 2279: g++: command not found configure:7723: $? = 127 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.0" | #define PACKAGE_STRING "R 3.1.0" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:7723: g++ -E -I/usr/local/include conftest.cpp ./configure: line 2279: g++: command not found configure:7723: $? = 127 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.0" | #define PACKAGE_STRING "R 3.1.0" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:7723: /lib/cpp -I/usr/local/include conftest.cpp cpp: error trying to exec 'cc1plus': execvp: No such file or directory configure:7723: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.0" | #define PACKAGE_STRING "R 3.1.0" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:7723: /lib/cpp -I/usr/local/include conftest.cpp cpp: error trying to exec 'cc1plus': execvp: No such file or directory configure:7723: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.0" | #define PACKAGE_STRING "R 3.1.0" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:7762: result: /lib/cpp configure:7782: /lib/cpp -I/usr/local/include conftest.cpp cpp: error trying to exec 'cc1plus': execvp: No such file or directory configure:7782: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.0" | #define PACKAGE_STRING "R 3.1.0" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:7782: /lib/cpp -I/usr/local/include conftest.cpp cpp: error trying to exec 'cc1plus': execvp: No such file or directory configure:7782: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.0" | #define PACKAGE_STRING "R 3.1.0" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:7812: error: in `/home/xwang4/software/R-3.1.0': configure:7814: error: C++ preprocessor "/lib/cpp" fails sanity check See `config.log' for more details ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=no ac_cv_env_BLAS_LIBS_set= ac_cv_env_BLAS_LIBS_value= ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPICFLAGS_set= ac_cv_env_CPICFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXX1XFLAGS_set= ac_cv_env_CXX1XFLAGS_value= ac_cv_env_CXX1XPICFLAGS_set= ac_cv_env_CXX1XPICFLAGS_value= ac_cv_env_CXX1XSTD_set= ac_cv_env_CXX1XSTD_value= ac_cv_env_CXX1X_set= ac_cv_env_CXX1X_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXXPICFLAGS_set= ac_cv_env_CXXPICFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_DEFS_set= ac_cv_env_DEFS_value= ac_cv_env_DYLIB_LDFLAGS_set= ac_cv_env_DYLIB_LDFLAGS_value= ac_cv_env_DYLIB_LD_set= ac_cv_env_DYLIB_LD_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FCPICFLAGS_set= ac_cv_env_FCPICFLAGS_value= ac_cv_env_FC_set= ac_cv_env_FC_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_FPICFLAGS_set= ac_cv_env_FPICFLAGS_value= ac_cv_env_JAVA_HOME_set=set ac_cv_env_JAVA_HOME_value=/usr/java/latest ac_cv_env_LAPACK_LIBS_set= ac_cv_env_LAPACK_LIBS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LIBnn_set= ac_cv_env_LIBnn_value= ac_cv_env_MAIN_CFLAGS_set= ac_cv_env_MAIN_CFLAGS_value= ac_cv_env_MAIN_FFLAGS_set= ac_cv_env_MAIN_FFLAGS_value= ac_cv_env_MAIN_LDFLAGS_set= ac_cv_env_MAIN_LDFLAGS_value= ac_cv_env_MAIN_LD_set= ac_cv_env_MAIN_LD_value= ac_cv_env_MAKE_set= ac_cv_env_MAKE_value= ac_cv_env_OBJCFLAGS_set= ac_cv_env_OBJCFLAGS_value= ac_cv_env_OBJC_set= ac_cv_env_OBJC_value= ac_cv_env_R_BATCHSAVE_set= ac_cv_env_R_BATCHSAVE_value= ac_cv_env_R_BROWSER_set= ac_cv_env_R_BROWSER_value= ac_cv_env_R_PAPERSIZE_set= ac_cv_env_R_PAPERSIZE_value= ac_cv_env_R_PDFVIEWER_set= ac_cv_env_R_PDFVIEWER_value= ac_cv_env_R_PRINTCMD_set= ac_cv_env_R_PRINTCMD_value= ac_cv_env_R_SHELL_set= ac_cv_env_R_SHELL_value= ac_cv_env_SAFE_FFLAGS_set= ac_cv_env_SAFE_FFLAGS_value= ac_cv_env_SHLIB_CFLAGS_set= ac_cv_env_SHLIB_CFLAGS_value= ac_cv_env_SHLIB_CXX1XLDFLAGS_set= ac_cv_env_SHLIB_CXX1XLDFLAGS_value= ac_cv_env_SHLIB_CXX1XLD_set= ac_cv_env_SHLIB_CXX1XLD_value= ac_cv_env_SHLIB_CXXLDFLAGS_set= ac_cv_env_SHLIB_CXXLDFLAGS_value= ac_cv_env_SHLIB_CXXLD_set= ac_cv_env_SHLIB_CXXLD_value= ac_cv_env_SHLIB_FCLDFLAGS_set= ac_cv_env_SHLIB_FCLDFLAGS_value= ac_cv_env_SHLIB_FCLD_set= ac_cv_env_SHLIB_FCLD_value= ac_cv_env_SHLIB_FFLAGS_set= ac_cv_env_SHLIB_FFLAGS_value= ac_cv_env_SHLIB_LDFLAGS_set= ac_cv_env_SHLIB_LDFLAGS_value= ac_cv_env_SHLIB_LD_set= ac_cv_env_SHLIB_LD_value= ac_cv_env_TAR_set= ac_cv_env_TAR_value= ac_cv_env_TCLTK_CPPFLAGS_set= ac_cv_env_TCLTK_CPPFLAGS_value= ac_cv_env_TCLTK_LIBS_set= ac_cv_env_TCLTK_LIBS_value= ac_cv_env_XMKMF_set= ac_cv_env_XMKMF_value= ac_cv_env_YACC_set= ac_cv_env_YACC_value= ac_cv_env_YFLAGS_set= ac_cv_env_YFLAGS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_r_arch_set= ac_cv_env_r_arch_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GETWD=/bin/pwd ac_cv_path_GREP=/bin/grep ac_cv_path_NOTANGLE=false ac_cv_path_PAGER=/usr/bin/less ac_cv_path_PKGCONF=/usr/bin/pkg-config ac_cv_path_REALPATH=false ac_cv_path_R_BROWSER=/usr/bin/xdg-open ac_cv_path_R_BZIPCMD=/usr/bin/bzip2 ac_cv_path_R_GZIPCMD=/bin/gzip ac_cv_path_R_PDFVIEWER=/usr/bin/xdg-open ac_cv_path_R_UNZIPCMD=/usr/bin/unzip ac_cv_path_R_ZIPCMD=/usr/bin/zip ac_cv_path_SED=/bin/sed ac_cv_path_TAR=/bin/gtar ac_cv_path_WHICH=/usr/bin/which ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AR=ar ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP=/lib/cpp ac_cv_prog_F77=gfortran ac_cv_prog_YACC='bison -y' ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=no ac_cv_prog_f77_g=yes ac_cv_prog_gcc_traditional=no ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='$(SHELL) $(top_srcdir)/tools/missing aclocal' ALLOCA='' AR='ar' ARFLAGS='rc' AUTOCONF='$(SHELL) $(top_srcdir)/tools/missing autoconf' AUTOHEADER='$(SHELL) $(top_srcdir)/tools/missing autoheader' AUTOMAKE='$(SHELL) $(top_srcdir)/tools/missing automake' AWK='gawk' BITMAP_LIBS='' BLAS_LIBS0='' BLAS_LIBS='' BLAS_SHLIB_FALSE='' BLAS_SHLIB_TRUE='' BUILDDIR_IS_SRCDIR='yes' BUILD_AQUA_FALSE='' BUILD_AQUA_TRUE='' BUILD_BZLIB_FALSE='' BUILD_BZLIB_TRUE='' BUILD_CC='' BUILD_CYGWIN_FALSE='' BUILD_CYGWIN_TRUE='' BUILD_DEVCAIRO_FALSE='' BUILD_DEVCAIRO_TRUE='' BUILD_HTML_FALSE='' BUILD_HTML_TRUE='#' BUILD_INCLUDED_LIBINTL='' BUILD_LIBINTL_FALSE='' BUILD_LIBINTL_TRUE='' BUILD_LTO_FALSE='' BUILD_LTO_TRUE='#' BUILD_PCRE_FALSE='' BUILD_PCRE_TRUE='' BUILD_R='' BUILD_TRE_FALSE='' BUILD_TRE_TRUE='' BUILD_TZONE_FALSE='' BUILD_TZONE_TRUE='' BUILD_X11_FALSE='' BUILD_X11_TRUE='' BUILD_XDR_FALSE='' BUILD_XDR_TRUE='' BUILD_XZ_FALSE='' BUILD_XZ_TRUE='' BUILD_ZLIB_FALSE='' BUILD_ZLIB_TRUE='' BYTE_COMPILE_PACKAGES_FALSE='#' BYTE_COMPILE_PACKAGES_TRUE='' CAIROX11_CPPFLAGS='' CAIROX11_LIBS='' CAIRO_CPPFLAGS='' CAIRO_LIBS='' CATOBJEXT='' CC='gcc' CFLAGS='-g -O2' CFLAG_VISIBILITY='' COMPILE_FORTRAN_DOUBLE_COMPLEX_FALSE='' COMPILE_FORTRAN_DOUBLE_COMPLEX_TRUE='' CPICFLAGS='' CPP='gcc -E' CPPFLAGS='-I/usr/local/include' CROSS_COMPILING_FALSE='' CROSS_COMPILING_TRUE='' CXX1X='' CXX1XFLAGS='' CXX1XPICFLAGS='' CXX1XSTD='' CXX='g++' CXXCPP0='' CXXCPP='/lib/cpp' CXXFLAGS='' CXXPICFLAGS='' C_VISIBILITY='' DATADIRNAME='' DEFS='' DSYMUTIL='' DUMPBIN='' DYLIB_EXT='' DYLIB_LD='' DYLIB_LDFLAGS='' DYLIB_UNDEFINED_ALLOWED_FALSE='' DYLIB_UNDEFINED_ALLOWED_TRUE='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' F77='gfortran' F77_VISIBILITY='' FC='' FCFLAGS='' FCFLAGS_f90='' FCFLAGS_f95='' FCLIBS='' FCPICFLAGS='' FFLAGS='-g -O2' FGREP='' FLIBS='' FLIBS_IN_SO='' FOUNDATION_CPPFLAGS='' FOUNDATION_LIBS='' FPICFLAGS='' FW_VERSION='' GENCAT='' GETWD='/bin/pwd' GLIBC21='' GLIBC2='' GREP='/bin/grep' HAVE_ASPRINTF='' HAVE_CXX11='' HAVE_FORTRAN_DOUBLE_COMPLEX='' HAVE_POSIX_PRINTF='' HAVE_SNPRINTF='' HAVE_VISIBILITY='' HAVE_WPRINTF='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_INFO='' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTOBJEXT='' INTLBISON='' INTLLIBS='' INTLOBJS='' INTL_LIBTOOL_SUFFIX_PREFIX='' INTL_MACOSX_LIBS='' JAR='' JAVA='' JAVAC='' JAVAH='' JAVA_CPPFLAGS0='' JAVA_HOME='/usr/java/latest' JAVA_LD_LIBRARY_PATH='' JAVA_LIBS0='' KPSEWHICH='' LAPACK_LDFLAGS='' LAPACK_LIBS='' LD='' LDFLAGS='-L/usr/local/lib64' LIBICONV='' LIBINTL='' LIBM='' LIBMULTITHREAD='' LIBOBJS='' LIBPTH='' LIBR='' LIBR_LDFLAGS='' LIBS='' LIBTHREAD='' LIBTOOL='' LIBTOOL_DEPS='' LIBnn='lib64' LIPO='' LN_S='ln -s' LTLIBICONV='' LTLIBINTL='' LTLIBMULTITHREAD='' LTLIBOBJS='' LTLIBPTH='' LTLIBTHREAD='' LTO='' LTOALL='' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAIN_CFLAGS='' MAIN_FFLAGS='' MAIN_LD='' MAIN_LDFLAGS='' MAJ_MIN_VERSION='3.1' MAKE='make' MAKEINDEX='' MAKEINFO='' MKDIR_P='' NM='' NMEDIT='' NOTANGLE='false' OBJC='' OBJCFLAGS='' OBJCXX='' OBJCXXFLAGS='' OBJC_LIBS='' OBJDUMP='' OBJEXT='o' OPENMP_CFLAGS='' OPENMP_CXXFLAGS='' OPENMP_FCFLAGS='' OPENMP_FFLAGS='' OSF_SH_BUG='' OTOOL64='' OTOOL='' PACKAGE='R' PACKAGE_BUGREPORT='http://bugs.r-project.org' PACKAGE_NAME='R' PACKAGE_STRING='R 3.1.0' PACKAGE_TARNAME='R' PACKAGE_URL='http://www.r-project.org' PACKAGE_VERSION='3.1.0' PAGER='/usr/bin/less' PAPERCONF='' PATH_SEPARATOR=':' PDFLATEX='' PDFTEX='' PKGCONF='/usr/bin/pkg-config' POSUB='' PRI_MACROS_BROKEN='' RANLIB='' RBLAS_LDFLAGS='' READLINE_LIBS='' REALPATH='false' RLAPACK_LDFLAGS='' RMATH_HAVE_EXPM1='' RMATH_HAVE_HYPOT='' RMATH_HAVE_LOG1P='' RMATH_HAVE_WORKING_LOG1P='' R_ARCH='' R_BATCHSAVE='' R_BROWSER='/usr/bin/xdg-open' R_BZIPCMD='/usr/bin/bzip2' R_CONFIG_ARGS=' '\''JAVA_HOME=/usr/java/latest'\''' R_DEFS='' R_GZIPCMD='/bin/gzip' R_JAVA_LD_LIBRARY_PATH='' R_LD_LIBRARY_PATH='' R_OPENMP_CFLAGS='' R_OPENMP_FFLAGS='' R_OS='linux-gnu' R_OSTYPE='unix' R_PAPERSIZE='' R_PDFVIEWER='/usr/bin/xdg-open' R_PLATFORM='x86_64-unknown-linux-gnu' R_PRINTCMD='' R_PROFILING='' R_RD4PDF='times,inconsolata,hyper' R_SHELL='' R_SYSTEM_ABI='' R_UNZIPCMD='/usr/bin/unzip' R_XTRA_CFLAGS='' R_XTRA_CPPFLAGS2='-I$(R_INCLUDE_DIR)' R_XTRA_CPPFLAGS='' R_XTRA_CXXFLAGS='' R_XTRA_FFLAGS='' R_XTRA_LIBS='' R_ZIPCMD='/usr/bin/zip' Rshlibpath_var='' SAFE_FFLAGS='' SED='/bin/sed' SHELL='/bin/sh' SHLIB_CFLAGS='' SHLIB_CXX1XLD='' SHLIB_CXX1XLDFLAGS='' SHLIB_CXXFLAGS='' SHLIB_CXXLD='' SHLIB_CXXLDFLAGS='' SHLIB_EXT='' SHLIB_FCLD='' SHLIB_FCLDFLAGS='' SHLIB_FFLAGS='' SHLIB_LD='' SHLIB_LDFLAGS='' SHLIB_LIBADD='' SHLIB_OPENMP_CFLAGS='' SHLIB_OPENMP_CXXFLAGS='' SHLIB_OPENMP_FCFLAGS='' SHLIB_OPENMP_FFLAGS='' STATICR1='' STATICR2='' STRIP='' TAR='/bin/gtar' TCLTK_CPPFLAGS='' TCLTK_LIBS='' TCL_CONFIG='' TEX='' TEXI2DVI='' TEXI2DVICMD='texi2dvi' TIRPC_CPPFLAGS='' TK_CONFIG='' USE_EXPORTFILES_FALSE='' USE_EXPORTFILES_TRUE='' USE_EXTERNAL_BLAS_FALSE='' USE_EXTERNAL_BLAS_TRUE='' USE_EXTERNAL_LAPACK_FALSE='' USE_EXTERNAL_LAPACK_TRUE='' USE_ICU='' USE_ICU_APPLE='' USE_INCLUDED_LIBINTL='' USE_MMAP_ZLIB_FALSE='' USE_MMAP_ZLIB_TRUE='' USE_NLS='' USE_NLS_FALSE='' USE_NLS_TRUE='' USE_RECOMMENDED_PACKAGES_FALSE='' USE_RECOMMENDED_PACKAGES_TRUE='' USE_VECLIB_G95FIX_FALSE='' USE_VECLIB_G95FIX_TRUE='' VERSION='3.1.0' WANT_R_FRAMEWORK_FALSE='' WANT_R_FRAMEWORK_TRUE='#' WANT_R_SHLIB_FALSE='' WANT_R_SHLIB_TRUE='#' WANT_R_STATIC_FALSE='' WANT_R_STATIC_TRUE='#' WHICH='/usr/bin/which' WOE32DLL='' XMKMF='' XTRA_INTL_CPPFLAGS='' X_CFLAGS='' X_EXTRA_LIBS='' X_LIBS='' X_PRE_LIBS='' YACC='bison -y' YFLAGS='' ac_ct_CC='gcc' ac_ct_CXX='' ac_ct_DUMPBIN='' ac_ct_F77='' ac_ct_FC='' ac_ct_OBJC='' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' config_opts=' '\''JAVA_HOME=/usr/java/latest'\''' custom_JAVA_CPPFLAGS='' custom_JAVA_HOME='' custom_JAVA_LD_LIBRARY_PATH='' custom_JAVA_LIBS='' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' libdir='${exec_prefix}/${LIBnn}' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' lt_ECHO='echo' mandir='${datarootdir}/man' mkdir_p='' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='NONE' program_transform_name='s,x,x,' psdir='${docdir}' r_arch='' rdocdir='${rhome}/doc' rincludedir='${rhome}/include' rsharedir='${rhome}/share' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' shlibpath_var='' striplib='' stripstaticlib='' sysconfdir='${prefix}/etc' target_alias='' use_tcltk='' ## ------------------- ## ## File substitutions. ## ## ------------------- ## r_cc_lo_rules_frag='' r_cc_rules_frag='' r_cxx_rules_frag='' r_objc_rules_frag='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "R" #define PACKAGE_TARNAME "R" #define PACKAGE_VERSION "3.1.0" #define PACKAGE_STRING "R 3.1.0" #define PACKAGE_BUGREPORT "http://bugs.r-project.org" #define PACKAGE_URL "http://www.r-project.org" #define PACKAGE "R" #define VERSION "3.1.0" #define R_PLATFORM "x86_64-unknown-linux-gnu" #define R_CPU "x86_64" #define R_VENDOR "unknown" #define R_OS "linux-gnu" #define Unix 1 #define R_ARCH "" configure: exit 1